jgi.p|Nanoce1779_2|571857, mRNA_1358 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571857
Unique NamemRNA_1358
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length494
Alignment locationscaffold_1:377428..378344 -

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Properties
Property NameValue
TranscriptId571943
TrackFilteredModels2
ProteinId571857
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:377428..378344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571857gene_1358Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571857mRNA_1358-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1358CDS_1358Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1358 ID=mRNA_1358|Name=jgi.p|Nanoce1779_2|571857|organism=Nannochloropsis oceanica|type=mRNA|length=494bp
ACAGACAACCACCCCAATCACACCACACTCGCACTATCATGCAAAACGAA
GCTGGTCAAAACGTGGATCTCTACATCCCCCGCAAATGCTCCTGGACCAA
CCGCGTTGTCCACTCTAAGGACCACGCCGCCGTACAGATCAACGTTGCCA
ATGTGGATGCTAACGGTGTGTACACGCAGGGGGACTTCAAGACCCTTGCC
TTGGCTGGCTACATCCGTGCCAAGGGAGAGGCGGACTCTGCGTTTACGGA
GCTGGCAAAGAAGGCTGACAGCGAGATGTAAGCGGAGGGAGACGAGAATG
GGTGCATAGAACGGCATAATATCGAAACTGGAAGAGCGGAAGGAAATGCA
AGCTCGGACAATACAAAAACATGTCCGTGAAGAAAAGAGAAGGGGTTGCG
TGAGCGACAGTATTTTGACCTCATTTATTTCTTTTCTCTTCTTGACGGTG
AGACCTAAAAAAACACAAAGAAAGAAATATACGATAGAAACAAA
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protein sequence of jgi.p|Nanoce1779_2|571857

>mRNA_1358-protein ID=mRNA_1358-protein|Name=jgi.p|Nanoce1779_2|571857|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MQNEAGQNVDLYIPRKCSWTNRVVHSKDHAAVQINVANVDANGVYTQGDF
KTLALAGYIRAKGEADSAFTELAKKADSEM*
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mRNA from alignment at scaffold_1:377428..378344-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1358 ID=mRNA_1358|Name=jgi.p|Nanoce1779_2|571857|organism=Nannochloropsis oceanica|type=mRNA|length=917bp|location=Sequence derived from alignment at scaffold_1:377428..378344- (Nannochloropsis oceanica)
ACAGACAACCACCCCAATCACACCACACTCGCACTATCATGCAAAACGAA
GCTGGTCAAAACGTGGATCTCTACATCCCCCGCAAATGGTGAGTACTCTT
ACTGAAGAGAGAGAGCACGATAGGGGGATAGGCGCAGCGCGTAGAGGAAA
GGGAGGATTCCACGTGTGGTGGCAAGGCGTTCTGACTTAATGTGCCTGCA
CTACCATGAGACGTAAAGAGCTAAAGAGCTGTATAGTGTGGGTTGTGCAT
AATGAAGGTCTAATTGTTTCACATGGTGCCCTTTTCCCGATTTCTCCCTA
CCCCATCATCACAGCTCCTGGACCAACCGCGTTGTCCACTCTAAGGACCA
CGCCGCCGTACAGGTAATTACACGGAGCAGTAGAGTACAAGGGAATAGAC
GAGGATAAGGGAACTGGGTTTGATACGTGCTGGCAGGCGTTATTTTCGTT
CCTAAGTGATCGTAGTGGTGTACCCTGTACTTGTTATCGTGTTCGGCGTC
GAAAGGATCAGGAGCTCATCTCTCTCCTTTCCCTCTCTTTACACCACACC
TGACCTACAGATCAACGTTGCCAATGTGGATGCTAACGGTGTGTACACGC
AGGGGGACTTCAAGACCCTTGCCTTGGCTGGCTACATCCGTGCCAAGGGA
GAGGCGGACTCTGCGTTTACGGAGCTGGCAAAGAAGGCTGACAGCGAGAT
GTAAGCGGAGGGAGACGAGAATGGGTGCATAGAACGGCATAATATCGAAA
CTGGAAGAGCGGAAGGAAATGCAAGCTCGGACAATACAAAAACATGTCCG
TGAAGAAAAGAGAAGGGGTTGCGTGAGCGACAGTATTTTGACCTCATTTA
TTTCTTTTCTCTTCTTGACGGTGAGACCTAAAAAAACACAAAGAAAGAAA
TATACGATAGAAACAAA
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Coding sequence (CDS) from alignment at scaffold_1:377428..378344-

>mRNA_1358 ID=mRNA_1358|Name=jgi.p|Nanoce1779_2|571857|organism=Nannochloropsis oceanica|type=CDS|length=729bp|location=Sequence derived from alignment at scaffold_1:377428..378344- (Nannochloropsis oceanica)
ATCAACGTTGCCAATGTGGATGCTAACGGTGTGTACACGCAGGGGGACTT
CAAGACCCTTGCCTTGGCTGGCTACATCCGTGCCAAGGGAGAGGCGGACT
CTGCGTTTACGGAGCTGGCAAAGAAGGCTGACAGCGAGATGTAACTCCTG
GACCAACCGCGTTGTCCACTCTAAGGACCACGCCGCCGTACAGATGCAAA
ACGAAGCTGGTCAAAACGTGGATCTCTACATCCCCCGCAAATGATCAACG
TTGCCAATGTGGATGCTAACGGTGTGTACACGCAGGGGGACTTCAAGACC
CTTGCCTTGGCTGGCTACATCCGTGCCAAGGGAGAGGCGGACTCTGCGTT
TACGGAGCTGGCAAAGAAGGCTGACAGCGAGATGTAACTCCTGGACCAAC
CGCGTTGTCCACTCTAAGGACCACGCCGCCGTACAGATGCAAAACGAAGC
TGGTCAAAACGTGGATCTCTACATCCCCCGCAAATGATCAACGTTGCCAA
TGTGGATGCTAACGGTGTGTACACGCAGGGGGACTTCAAGACCCTTGCCT
TGGCTGGCTACATCCGTGCCAAGGGAGAGGCGGACTCTGCGTTTACGGAG
CTGGCAAAGAAGGCTGACAGCGAGATGTAACTCCTGGACCAACCGCGTTG
TCCACTCTAAGGACCACGCCGCCGTACAGATGCAAAACGAAGCTGGTCAA
AACGTGGATCTCTACATCCCCCGCAAATG
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Synonyms
Publications