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Properties
| Property Name | Value |
|---|
| TranscriptId | 4610 |
| Track | FilteredModels2 |
| ProteinId | 4524 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:372222..374764 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1356 ID=mRNA_1356|Name=jgi.p|Nanoce1779_2|4524|organism=Nannochloropsis oceanica|type=mRNA|length=2358bp
ACGCCAGCAGTTGCACACCAATCCTCCCGTCGTACCAAGGACGGAAAAGG
TCAAAATGCTCGCCTTGCACTGTTTTGAAGGGCCGCTCCTTAAAAGCAAA
CTTGTGTTTACGCCCCAAAATGTCTGACTTCCCGAGAGAAGGCATCATAC
TTAGTGATTTAGGGCTGAAATGTTGCAAACATAGATAGCTGAAGCCCGCA
AATATGATCAGATAAATAAAAGGAGTTGACAGTCGATGCCTCCAGTGAAC
TGGATGCACGGACTTCGAAGAATGATGAAACATGACCGCGCCCGGTTGTG
CTGTACTACGAGAAAGGTACAAAGATGGACGAGCATCCAGAACAGGCATG
GGTCGCGAATGGTCGTGGTTGCTGGCTGCTTGGGTTTTTTTATTCTTAGT
CAATGCAGGGGCTGCCTACATGTCATCACCCAATGAGCACCTGCCGAAGG
AGAACGTCCGGGCCCATCTTCTAAAAGACACCACCGCACGCCTCTACCAC
CACTCTGCAGGCCGGCTCGCGGTCATCCTCAACAACACCCAGTCTGCGGC
ATGCGCGGAGGAAGTGACTTTGGCGTATGAGGCCTTTCTTACCGCGCACA
TGACCGAGACGCTCCTACCCTTCGAATCGCCCTTTGTCCAGAATCAATGC
CCCATGCCTGGCAGGAGCTCGACCGCATCTCCAGGCGATGGTGCCGAAAA
TAACACCCTGGCCATCCCGGAGATTTTCAAGACAGCCGAGGACCTCCGCT
TGCTCTATGTCATCACGGCGCACCGTGACTTGGAGCAGGTGGTGCGACTC
ATCGAAGCCCTTCAAGACGACCCAGAGGACAGGAGCATCTGCCCGCCCTC
AACAACAGGGACAATTAATTCCTGTGTGAGGAGCCACTTTGTCGTGCATG
TCGACGGCAAGCTAGGACCGCTCCCCGATGATTTGCCCTTGTTGACCTAC
GCGTCCAAGACCCCCAACGTGTACGTGATGCGCGAAGGCCGAGTGAACGT
GAGCTGGGGCGGGTTCTCCGTCGTCCAAGCCACGCTCAACGCCATTTCCT
ACGGCTTCTATCTCAATTTGCCTTTCGACCGTGTCATTAATCTTAGTGGT
GCTACCTACCCGATGGCAACCCCTCGGCAGATTCGCTCGACGCTAGCCCA
ACATCCAGTAAACGTTCAACTCATGTTCATTGACCCGATGGCAAATGTAC
CTAACCCCCGAGTTTGGCATTACTTCGTCGAATGCGACAACCAAATGCAT
CGCATCGCTCGCTTTGGCATTCCGCGTGGTGTGCCCTTGCGAACGGGCTC
CCAGTGGTTTGTGATCTCGAGGGATTTCGCGCATTATTTATTAACGGACG
AGAAGTTCGTGGGGCCTTACACTGCATACGCCCAACATATCCTCATTCCC
GACGAGAATTTCTTTGCGACGGTTCTTAAGTCTTCCCCATATTGCCACCA
TCATTATAACACGAATTATTTACATTTGACTTTTGATGTATGGGAGGACG
AGAAGGGCACGGCGGCTGATCAAAGCAAGTGCCTGCAGCCGGACCCGAGA
ATTTGTGGAAGGTCTCCTCTGTTGGTCGGTATGGAGAAGATAGAGCATTT
AATCCCATCCTCTTCCCCTTCCTTGCCTGGTAATAGCAGGAACGAGACAT
TCCTTTTCGCCCGAAAATTTGATTCGCAGGCGAGTGCTGCGGTATTGGAA
GAGGTGGATAGGCGCTTGGCTTTGCAGCGGACATTGGAACGCGAGGAGGC
TGCAGTAGCTGCAGCAGCAGCACTAAAGGAGAAAGGGGGAGACACATGCA
GAAGTAAGGATAGCAGCAGCACCGCTTGCAGCAGCAGTAGTCTGTCGGAT
GGGATGGGGGTTGGGATAGGCATCACCAGCGTTTTGAGAGACCAAGGAAT
TGCCCTTGAATCGATTCAGTGGTGAGAAGGGACGCTGGATATTAAGTTGC
GCATGTATAGATGTAAGCCTAGGTATTCAAAAAGACCCGAAAAGTAAGTA
GGTGTCGACTGTGAGTCGCGGAGGATGCAGCCCCGAACCAAAGACAAGTA
GTAATTGACGAAAAATAATGTACGTTCATCCAGGTGGACTTTCAACATCG
AAAGTAATTTGTCGGGCTGCCTTCTTCTTGGAGGGAGGGTCCGGCTTGGT
TTCAGAAATAAAAATGCTTCCTCTTCGGGGAAAAGGAGCCCATGGCATCG
ATAAAGTAAAGTACTGTCAAATCAAAAAAGAGGGCGAAATTCCATACATT
CTTTGCATGTATAGTGTAGCCAAAGCTTTCTTCCACAGGCTTGACTTCTC
GATCCTCCTCCGAGTTACAAAAAATGTGACAGCAGGTGTCCAGGGGATAT
TTAATAGG back to topprotein sequence of jgi.p|Nanoce1779_2|4524 >mRNA_1356-protein ID=mRNA_1356-protein|Name=jgi.p|Nanoce1779_2|4524|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MTAPGCAVLRERYKDGRASRTGMGREWSWLLAAWVFLFLVNAGAAYMSSP
NEHLPKENVRAHLLKDTTARLYHHSAGRLAVILNNTQSAACAEEVTLAYE
AFLTAHMTETLLPFESPFVQNQCPMPGRSSTASPGDGAENNTLAIPEIFK
TAEDLRLLYVITAHRDLEQVVRLIEALQDDPEDRSICPPSTTGTINSCVR
SHFVVHVDGKLGPLPDDLPLLTYASKTPNVYVMREGRVNVSWGGFSVVQA
TLNAISYGFYLNLPFDRVINLSGATYPMATPRQIRSTLAQHPVNVQLMFI
DPMANVPNPRVWHYFVECDNQMHRIARFGIPRGVPLRTGSQWFVISRDFA
HYLLTDEKFVGPYTAYAQHILIPDENFFATVLKSSPYCHHHYNTNYLHLT
FDVWEDEKGTAADQSKCLQPDPRICGRSPLLVGMEKIEHLIPSSSPSLPG
NSRNETFLFARKFDSQASAAVLEEVDRRLALQRTLEREEAAVAAAAALKE
KGGDTCRSKDSSSTACSSSSLSDGMGVGIGITSVLRDQGIALESIQW* back to topmRNA from alignment at scaffold_1:372222..374764- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1356 ID=mRNA_1356|Name=jgi.p|Nanoce1779_2|4524|organism=Nannochloropsis oceanica|type=mRNA|length=2543bp|location=Sequence derived from alignment at scaffold_1:372222..374764- (Nannochloropsis oceanica)
ACGCCAGCAGTTGCACACCAATCCTCCCGTCGTACCAAGGACGGAAAAGG
TCAAAATGCTCGCCTTGCACTGTTTTGAAGGGCCGCTCCTTAAAAGCAAA
CTTGTGTTTACGCCCCAAAATGTCTGACTTCCCGAGAGAAGGCATCATAC
TTAGTGATTTAGGGCTGAAATGTTGCAAACATAGATAGCTGAAGCCCGCA
AATATGATCAGATAAATAAAAGGAGTTGACAGTCGATGCCTCCAGTGAAC
TGGATGCACGGACTTCGAAGAATGATGAAACATGACCGCGCCCGGTTGTG
CTGTACTACGAGAAAGGTACAAAGATGGACGAGGTGAGTAGATGCAGATG
TGATACCGGTGGCGGGCGAGGTGTGCAGCTCTGCACGCAGAGCGAGCTAC
CATATACCATAATAATAATTTAAAATTGAAGCATATGGGCGACACGCTCC
TCCCGCGGCGGAATCCCGCCCCACCCACACCAAAAATCGTGTTGGTGACT
CCACTCACCACACGCAAGCATCCAGAACAGGCATGGGTCGCGAATGGTCG
TGGTTGCTGGCTGCTTGGGTTTTTTTATTCTTAGTCAATGCAGGGGCTGC
CTACATGTCATCACCCAATGAGCACCTGCCGAAGGAGAACGTCCGGGCCC
ATCTTCTAAAAGACACCACCGCACGCCTCTACCACCACTCTGCAGGCCGG
CTCGCGGTCATCCTCAACAACACCCAGTCTGCGGCATGCGCGGAGGAAGT
GACTTTGGCGTATGAGGCCTTTCTTACCGCGCACATGACCGAGACGCTCC
TACCCTTCGAATCGCCCTTTGTCCAGAATCAATGCCCCATGCCTGGCAGG
AGCTCGACCGCATCTCCAGGCGATGGTGCCGAAAATAACACCCTGGCCAT
CCCGGAGATTTTCAAGACAGCCGAGGACCTCCGCTTGCTCTATGTCATCA
CGGCGCACCGTGACTTGGAGCAGGTGGTGCGACTCATCGAAGCCCTTCAA
GACGACCCAGAGGACAGGAGCATCTGCCCGCCCTCAACAACAGGGACAAT
TAATTCCTGTGTGAGGAGCCACTTTGTCGTGCATGTCGACGGCAAGCTAG
GACCGCTCCCCGATGATTTGCCCTTGTTGACCTACGCGTCCAAGACCCCC
AACGTGTACGTGATGCGCGAAGGCCGAGTGAACGTGAGCTGGGGCGGGTT
CTCCGTCGTCCAAGCCACGCTCAACGCCATTTCCTACGGCTTCTATCTCA
ATTTGCCTTTCGACCGTGTCATTAATCTTAGTGGTGCTACCTACCCGATG
GCAACCCCTCGGCAGATTCGCTCGACGCTAGCCCAACATCCAGTAAACGT
TCAACTCATGTTCATTGACCCGATGGCAAATGTACCTAACCCCCGAGTTT
GGCATTACTTCGTCGAATGCGACAACCAAATGCATCGCATCGCTCGCTTT
GGCATTCCGCGTGGTGTGCCCTTGCGAACGGGCTCCCAGTGGTTTGTGAT
CTCGAGGGATTTCGCGCATTATTTATTAACGGACGAGAAGTTCGTGGGGC
CTTACACTGCATACGCCCAACATATCCTCATTCCCGACGAGAATTTCTTT
GCGACGGTTCTTAAGTCTTCCCCATATTGCCACCATCATTATAACACGAA
TTATTTACATTTGACTTTTGATGTATGGGAGGACGAGAAGGGCACGGCGG
CTGATCAAAGCAAGTGCCTGCAGCCGGACCCGAGAATTTGTGGAAGGTCT
CCTCTGTTGGTCGGTATGGAGAAGATAGAGCATTTAATCCCATCCTCTTC
CCCTTCCTTGCCTGGTAATAGCAGGAACGAGACATTCCTTTTCGCCCGAA
AATTTGATTCGCAGGCGAGTGCTGCGGTATTGGAAGAGGTGGATAGGCGC
TTGGCTTTGCAGCGGACATTGGAACGCGAGGAGGCTGCAGTAGCTGCAGC
AGCAGCACTAAAGGAGAAAGGGGGAGACACATGCAGAAGTAAGGATAGCA
GCAGCACCGCTTGCAGCAGCAGTAGTCTGTCGGATGGGATGGGGGTTGGG
ATAGGCATCACCAGCGTTTTGAGAGACCAAGGAATTGCCCTTGAATCGAT
TCAGTGGTGAGAAGGGACGCTGGATATTAAGTTGCGCATGTATAGATGTA
AGCCTAGGTATTCAAAAAGACCCGAAAAGTAAGTAGGTGTCGACTGTGAG
TCGCGGAGGATGCAGCCCCGAACCAAAGACAAGTAGTAATTGACGAAAAA
TAATGTACGTTCATCCAGGTGGACTTTCAACATCGAAAGTAATTTGTCGG
GCTGCCTTCTTCTTGGAGGGAGGGTCCGGCTTGGTTTCAGAAATAAAAAT
GCTTCCTCTTCGGGGAAAAGGAGCCCATGGCATCGATAAAGTAAAGTACT
GTCAAATCAAAAAAGAGGGCGAAATTCCATACATTCTTTGCATGTATAGT
GTAGCCAAAGCTTTCTTCCACAGGCTTGACTTCTCGATCCTCCTCCGAGT
TACAAAAAATGTGACAGCAGGTGTCCAGGGGATATTTAATAGG back to topCoding sequence (CDS) from alignment at scaffold_1:372222..374764- >mRNA_1356 ID=mRNA_1356|Name=jgi.p|Nanoce1779_2|4524|organism=Nannochloropsis oceanica|type=CDS|length=3288bp|location=Sequence derived from alignment at scaffold_1:372222..374764- (Nannochloropsis oceanica)
CATCCAGAACAGGCATGGGTCGCGAATGGTCGTGGTTGCTGGCTGCTTGG
GTTTTTTTATTCTTAGTCAATGCAGGGGCTGCCTACATGTCATCACCCAA
TGAGCACCTGCCGAAGGAGAACGTCCGGGCCCATCTTCTAAAAGACACCA
CCGCACGCCTCTACCACCACTCTGCAGGCCGGCTCGCGGTCATCCTCAAC
AACACCCAGTCTGCGGCATGCGCGGAGGAAGTGACTTTGGCGTATGAGGC
CTTTCTTACCGCGCACATGACCGAGACGCTCCTACCCTTCGAATCGCCCT
TTGTCCAGAATCAATGCCCCATGCCTGGCAGGAGCTCGACCGCATCTCCA
GGCGATGGTGCCGAAAATAACACCCTGGCCATCCCGGAGATTTTCAAGAC
AGCCGAGGACCTCCGCTTGCTCTATGTCATCACGGCGCACCGTGACTTGG
AGCAGGTGGTGCGACTCATCGAAGCCCTTCAAGACGACCCAGAGGACAGG
AGCATCTGCCCGCCCTCAACAACAGGGACAATTAATTCCTGTGTGAGGAG
CCACTTTGTCGTGCATGTCGACGGCAAGCTAGGACCGCTCCCCGATGATT
TGCCCTTGTTGACCTACGCGTCCAAGACCCCCAACGTGTACGTGATGCGC
GAAGGCCGAGTGAACGTGAGCTGGGGCGGGTTCTCCGTCGTCCAAGCCAC
GCTCAACGCCATTTCCTACGGCTTCTATCTCAATTTGCCTTTCGACCGTG
TCATTAATCTTAGTGGTGCTACCTACCCGATGGCAACCCCTCGGCAGATT
CGCTCGACGCTAGCCCAACATCCAGTAAACGTTCAACTCATGTTCATTGA
CCCGATGGCAAATGTACCTAACCCCCGAGTTTGGCATTACTTCGTCGAAT
GCGACAACCAAATGCATCGCATCGCTCGCTTTGGCATTCCGCGTGGTGTG
CCCTTGCGAACGGGCTCCCAGTGGTTTGTGATCTCGAGGGATTTCGCGCA
TTATTTATTAACGGACGAGAAGTTCGTGGGGCCTTACACTGCATACGCCC
AACATATCCTCATTCCCGACGAGAATTTCTTTGCGACGGTTCTTAAGTCT
TCCCCATATTGCCACCATCATTATAACACGAATTATTTACATTTGACTTT
TGATGTATGGGAGGACGAGAAGGGCACGGCGGCTGATCAAAGCAAGTGCC
TGCAGCCGGACCCGAGAATTTGTGGAAGGTCTCCTCTGTTGGTCGGTATG
GAGAAGATAGAGCATTTAATCCCATCCTCTTCCCCTTCCTTGCCTGGTAA
TAGCAGGAACGAGACATTCCTTTTCGCCCGAAAATTTGATTCGCAGGCGA
GTGCTGCGGTATTGGAAGAGGTGGATAGGCGCTTGGCTTTGCAGCGGACA
TTGGAACGCGAGGAGGCTGCAGTAGCTGCAGCAGCAGCACTAAAGGAGAA
AGGGGGAGACACATGCAGAAGTAAGGATAGCAGCAGCACCGCTTGCAGCA
GCAGTAGTCTGTCGGATGGGATGGGGGTTGGGATAGGCATCACCAGCGTT
TTGAGAGACCAAGGAATTGCCCTTGAATCGATTCAGTGGTGAATGACCGC
GCCCGGTTGTGCTGTACTACGAGAAAGGTACAAAGATGGACGAGCATCCA
GAACAGGCATGGGTCGCGAATGGTCGTGGTTGCTGGCTGCTTGGGTTTTT
TTATTCTTAGTCAATGCAGGGGCTGCCTACATGTCATCACCCAATGAGCA
CCTGCCGAAGGAGAACGTCCGGGCCCATCTTCTAAAAGACACCACCGCAC
GCCTCTACCACCACTCTGCAGGCCGGCTCGCGGTCATCCTCAACAACACC
CAGTCTGCGGCATGCGCGGAGGAAGTGACTTTGGCGTATGAGGCCTTTCT
TACCGCGCACATGACCGAGACGCTCCTACCCTTCGAATCGCCCTTTGTCC
AGAATCAATGCCCCATGCCTGGCAGGAGCTCGACCGCATCTCCAGGCGAT
GGTGCCGAAAATAACACCCTGGCCATCCCGGAGATTTTCAAGACAGCCGA
GGACCTCCGCTTGCTCTATGTCATCACGGCGCACCGTGACTTGGAGCAGG
TGGTGCGACTCATCGAAGCCCTTCAAGACGACCCAGAGGACAGGAGCATC
TGCCCGCCCTCAACAACAGGGACAATTAATTCCTGTGTGAGGAGCCACTT
TGTCGTGCATGTCGACGGCAAGCTAGGACCGCTCCCCGATGATTTGCCCT
TGTTGACCTACGCGTCCAAGACCCCCAACGTGTACGTGATGCGCGAAGGC
CGAGTGAACGTGAGCTGGGGCGGGTTCTCCGTCGTCCAAGCCACGCTCAA
CGCCATTTCCTACGGCTTCTATCTCAATTTGCCTTTCGACCGTGTCATTA
ATCTTAGTGGTGCTACCTACCCGATGGCAACCCCTCGGCAGATTCGCTCG
ACGCTAGCCCAACATCCAGTAAACGTTCAACTCATGTTCATTGACCCGAT
GGCAAATGTACCTAACCCCCGAGTTTGGCATTACTTCGTCGAATGCGACA
ACCAAATGCATCGCATCGCTCGCTTTGGCATTCCGCGTGGTGTGCCCTTG
CGAACGGGCTCCCAGTGGTTTGTGATCTCGAGGGATTTCGCGCATTATTT
ATTAACGGACGAGAAGTTCGTGGGGCCTTACACTGCATACGCCCAACATA
TCCTCATTCCCGACGAGAATTTCTTTGCGACGGTTCTTAAGTCTTCCCCA
TATTGCCACCATCATTATAACACGAATTATTTACATTTGACTTTTGATGT
ATGGGAGGACGAGAAGGGCACGGCGGCTGATCAAAGCAAGTGCCTGCAGC
CGGACCCGAGAATTTGTGGAAGGTCTCCTCTGTTGGTCGGTATGGAGAAG
ATAGAGCATTTAATCCCATCCTCTTCCCCTTCCTTGCCTGGTAATAGCAG
GAACGAGACATTCCTTTTCGCCCGAAAATTTGATTCGCAGGCGAGTGCTG
CGGTATTGGAAGAGGTGGATAGGCGCTTGGCTTTGCAGCGGACATTGGAA
CGCGAGGAGGCTGCAGTAGCTGCAGCAGCAGCACTAAAGGAGAAAGGGGG
AGACACATGCAGAAGTAAGGATAGCAGCAGCACCGCTTGCAGCAGCAGTA
GTCTGTCGGATGGGATGGGGGTTGGGATAGGCATCACCAGCGTTTTGAGA
GACCAAGGAATTGCCCTTGAATCGATTCAGTGGTGAATGACCGCGCCCGG
TTGTGCTGTACTACGAGAAAGGTACAAAGATGGACGAG back to top
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