jgi.p|Nanoce1779_2|535345, mRNA_1354 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|535345
Unique Name	mRNA_1354
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1402
Alignment location	scaffold_1:367594..369118 +

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Properties


Property Name	Value
TranscriptId	535431
Track	FilteredModels2
ProteinId	535345

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:367594..369118 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|535345	gene_1354	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|535345	mRNA_1354-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1354	CDS_1354	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:367594..369118+
coding sequence from alignment at scaffold_1:367594..369118+

mRNA sequence

>mRNA_1354 ID=mRNA_1354|Name=jgi.p|Nanoce1779_2|535345|organism=Nannochloropsis oceanica|type=mRNA|length=1402bp
CACAGACGTGAAATTGTGCAGTTCCGACACTACCACCCCTTGGCGTACCT
CCCTTGAGAAGCGAGCGCGTGTCTCGCGTCGGGTGGTCGGGAGAAAGAGA
GAGACCGTGCTTGTGCCGGTGCAGTACACGTCTTTGAAGTAGACACTCTG
CTGTTGTAGGCGCTGGAACGTGATCGCTCATGGAGGAAATGGAAAGTCCC
GTAACGTTTGACTCCATTCCGACCACGGACGTCTCAAGCTTTTGCAAGAT
CAACGATCGCGGCATCGGTAACCTCGACCTCGTCGACCTCTCCAACACCA
TATACTTCAATTTATTCATCTTTGTCCTTCTTCTCTTCCTATTCGAGAAA
GTCCGGCACAAGAAGACCGTCTACTTTTGCCGGGAGCAATGGATGCGGCA
CCGCATGCCCCCTGAGCTCCCCTCAGGTTTTTTGGCATGGCTTCGTCCAT
TACTGGCCACGCCCCAAAGACGCATTTTGCAATTAGCAGGGCTGGATGCT
TACATGCTGCTGAGATACATACGTTTGTGTCTCAAGGTATGTCTTTGTTC
CGGTTTCTTTGGATTGGTGATGTTGGTGCCTTTGTACCTTCATGGGGATC
AAAACAAACCTGCTGATGGCCGATTCGGCACGGTGATGAAGGACCCCAAG
CTGATTTCCATGGGGAATGTGAAGAGACTGCATTGGCTATGGGTTCCTAT
CGCTTTCGCCTATTTGACCACCTTCCACACCCTCTATCTCCTCAAGCGGG
AATACAAACGCTTCTTGACCTTGCGTCTCACATTCCTCTCAGTCGGAGAT
CCCGACGTGGACATCCAGAAATCATTTTCGGTCATGGTGGATCGAATCCC
GTTAGAGTACAGGACTAACGCAGGGTTATATGCTCTGTTCGACGAGATTT
TCCCTGGCGATGTACACAGTGCTGTGGTTGCCTTAAAGGCAGATGAGCTT
GAAAGCCTGGTTCAAGACCGAACAGCAGTGGTGGATAAATTGGAGAGGGC
CTTAGCTACTAGGGCGGTGACACATAAAGAGCCAATTATTTTCCTCCCCT
CTGTGCAGGGAAGTAAAGCGTGGAATTGGATCAGAGGGAAGGGGGAAATG
GTCGAGGCCGTCGCGCACCACCAACGGATCTTGGATGGGTTAAACAAAAA
AATCACCAAAATTCAAATAATGGTACGGCAGGCATCGGACGACCTGAACA
AGAAGGAGGAGGAATGGCAACAATCCAAGCGGAGCATACACCACCAGCAG
AGGCAGCAGGAGGAGATGCAGAGAGGCGTGAGCAGTTCCCAGGGCAGAAA
GGCAGGGCAGGGAGAAAGACCGGGCGAAGGGGCAGGAGAGATGGTGTCAG
CGGGGTTGTTGCACGGCGTGGGTAGTGGACGAATGAGTATGTCTCCTATG
TT

protein sequence of jgi.p|Nanoce1779_2|535345

>mRNA_1354-protein ID=mRNA_1354-protein|Name=jgi.p|Nanoce1779_2|535345|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MEEMESPVTFDSIPTTDVSSFCKINDRGIGNLDLVDLSNTIYFNLFIFVL
LLFLFEKVRHKKTVYFCREQWMRHRMPPELPSGFLAWLRPLLATPQRRIL
QLAGLDAYMLLRYIRLCLKVCLCSGFFGLVMLVPLYLHGDQNKPADGRFG
TVMKDPKLISMGNVKRLHWLWVPIAFAYLTTFHTLYLLKREYKRFLTLRL
TFLSVGDPDVDIQKSFSVMVDRIPLEYRTNAGLYALFDEIFPGDVHSAVV
ALKADELESLVQDRTAVVDKLERALATRAVTHKEPIIFLPSVQGSKAWNW
IRGKGEMVEAVAHHQRILDGLNKKITKIQIMVRQASDDLNKKEEEWQQSK
RSIHHQQRQQEEMQRGVSSSQGRKAGQGERPGEGAGEMVSAGLLHGVGSG
RMSMSPM

mRNA from alignment at scaffold_1:367594..369118+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1354 ID=mRNA_1354|Name=jgi.p|Nanoce1779_2|535345|organism=Nannochloropsis oceanica|type=mRNA|length=1525bp|location=Sequence derived from alignment at scaffold_1:367594..369118+ (Nannochloropsis oceanica)
CACAGACGTGAAATTGTGCAGTTCCGACACTACCACCCCTTGGCGTACCT
CCCTTGAGAAGCGAGCGCGTGTCTCGCGTCGGGTGGTCGGGAGAAAGAGA
GAGACCGTGCTTGTGCCGGTGCAGTACACGTCTTTGAAGTAGACACTCTG
CTGTTGTAGGCGCTGGAACGTGATCGCTCATGGAGGAAATGGAAAGTCCC
GTAACGTTTGACTCCATTCCGACCACGGACGTCTCAAGCTTTTGCAAGAT
CAACGATCGCGGCATCGGTAACCTCGACCTGTAAGTGTATAGGAACGGGG
TCTGGCATAGAGCGGGAGGGGTTGCAAGTGTTTGTGCGCGTGCTGGTGGT
GGCGAAGTCCGTCATACCAAACCGTCCAAAATCCATCCACACACCCTGCA
CAGCGTCGACCTCTCCAACACCATATACTTCAATTTATTCATCTTTGTCC
TTCTTCTCTTCCTATTCGAGAAAGTCCGGCACAAGAAGACCGTCTACTTT
TGCCGGGAGCAATGGATGCGGCACCGCATGCCCCCTGAGCTCCCCTCAGG
TTTTTTGGCATGGCTTCGTCCATTACTGGCCACGCCCCAAAGACGCATTT
TGCAATTAGCAGGGCTGGATGCTTACATGCTGCTGAGATACATACGTTTG
TGTCTCAAGGTATGTCTTTGTTCCGGTTTCTTTGGATTGGTGATGTTGGT
GCCTTTGTACCTTCATGGGGATCAAAACAAACCTGCTGATGGCCGATTCG
GCACGGTGATGAAGGACCCCAAGCTGATTTCCATGGGGAATGTGAAGAGA
CTGCATTGGCTATGGGTTCCTATCGCTTTCGCCTATTTGACCACCTTCCA
CACCCTCTATCTCCTCAAGCGGGAATACAAACGCTTCTTGACCTTGCGTC
TCACATTCCTCTCAGTCGGAGATCCCGACGTGGACATCCAGAAATCATTT
TCGGTCATGGTGGATCGAATCCCGTTAGAGTACAGGACTAACGCAGGGTT
ATATGCTCTGTTCGACGAGATTTTCCCTGGCGATGTACACAGTGCTGTGG
TTGCCTTAAAGGCAGATGAGCTTGAAAGCCTGGTTCAAGACCGAACAGCA
GTGGTGGATAAATTGGAGAGGGCCTTAGCTACTAGGGCGGTGACACATAA
AGAGCCAATTATTTTCCTCCCCTCTGTGCAGGGAAGTAAAGCGTGGAATT
GGATCAGAGGGAAGGGGGAAATGGTCGAGGCCGTCGCGCACCACCAACGG
ATCTTGGATGGGTTAAACAAAAAAATCACCAAAATTCAAATAATGGTACG
GCAGGCATCGGACGACCTGAACAAGAAGGAGGAGGAATGGCAACAATCCA
AGCGGAGCATACACCACCAGCAGAGGCAGCAGGAGGAGATGCAGAGAGGC
GTGAGCAGTTCCCAGGGCAGAAAGGCAGGGCAGGGAGAAAGACCGGGCGA
AGGGGCAGGAGAGATGGTGTCAGCGGGGTTGTTGCACGGCGTGGGTAGTG
GACGAATGAGTATGTCTCCTATGTT

Coding sequence (CDS) from alignment at scaffold_1:367594..369118+

>mRNA_1354 ID=mRNA_1354|Name=jgi.p|Nanoce1779_2|535345|organism=Nannochloropsis oceanica|type=CDS|length=2442bp|location=Sequence derived from alignment at scaffold_1:367594..369118+ (Nannochloropsis oceanica)
ATGGAGGAAATGGAAAGTCCCGTAACGTTTGACTCCATTCCGACCACGGA
CGTCTCAAGCTTTTGCAAGATCAACGATCGCGGCATCGGTAACCTCGACC
TCGTCGACCTCTCCAACACCATATACTTCAATTTATTCATCTTTGTCCTT
CTTCTCTTCCTATTCGAGAAAGTCCGGCACAAGAAGACCGTCTACTTTTG
CCGGGAGCAATGGATGCGGCACCGCATGCCCCCTGAGCTCCCCTCAGGTT
TTTTGGCATGGCTTCGTCCATTACTGGCCACGCCCCAAAGACGCATTTTG
CAATTAGCAGGGCTGGATGCTTACATGCTGCTGAGATACATACGTTTGTG
TCTCAAGGTATGTCTTTGTTCCGGTTTCTTTGGATTGGTGATGTTGGTGC
CTTTGTACCTTCATGGGGATCAAAACAAACCTGCTGATGGCCGATTCGGC
ACGGTGATGAAGGACCCCAAGCTGATTTCCATGGGGAATGTGAAGAGACT
GCATTGGCTATGGGTTCCTATCGCTTTCGCCTATTTGACCACCTTCCACA
CCCTCTATCTCCTCAAGCGGGAATACAAACGCTTCTTGACCTTGCGTCTC
ACATTCCTCTCAGTCGGAGATCCCGACGTGGACATCCAGAAATCATTTTC
GGTCATGGTGGATCGAATCCCGTTAGAGTACAGGACTAACGCAGGGTTAT
ATGCTCTGTTCGACGAGATTTTCCCTGGCGATGTACACAGTGCTGTGGTT
GCCTTAAAGGCAGATGAGCTTGAAAGCCTGGTTCAAGACCGAACAGCAGT
GGTGGATAAATTGGAGAGGGCCTTAGCTACTAGGGCGGTGACACATAAAG
AGCCAATTATTTTCCTCCCCTCTGTGCAGGGAAGTAAAGCGTGGAATTGG
ATCAGAGGGAAGGGGGAAATGGTCGAGGCCGTCGCGCACCACCAACGGAT
CTTGGATGGGTTAAACAAAAAAATCACCAAAATTCAAATAATGGTACGGC
AGGCATCGGACGACCTGAACAAGAAGGAGGAGGAATGGCAACAATCCAAG
CGGAGCATACACCACCAGCAGAGGCAGCAGGAGGAGATGCAGAGAGGCGT
GAGCAGTTCCCAGGGCAGAAAGGCAGGGCAGGGAGAAAGACCGGGCGAAG
GGGCAGGAGAGATGGTGTCAGCGGGGTTGTTGCACGGCGTGGGTAGTGGA
CGAATGAGTATGTCTCCTATGATGGAGGAAATGGAAAGTCCCGTAACGTT
TGACTCCATTCCGACCACGGACGTCTCAAGCTTTTGCAAGATCAACGATC
GCGGCATCGGTAACCTCGACCTCGTCGACCTCTCCAACACCATATACTTC
AATTTATTCATCTTTGTCCTTCTTCTCTTCCTATTCGAGAAAGTCCGGCA
CAAGAAGACCGTCTACTTTTGCCGGGAGCAATGGATGCGGCACCGCATGC
CCCCTGAGCTCCCCTCAGGTTTTTTGGCATGGCTTCGTCCATTACTGGCC
ACGCCCCAAAGACGCATTTTGCAATTAGCAGGGCTGGATGCTTACATGCT
GCTGAGATACATACGTTTGTGTCTCAAGGTATGTCTTTGTTCCGGTTTCT
TTGGATTGGTGATGTTGGTGCCTTTGTACCTTCATGGGGATCAAAACAAA
CCTGCTGATGGCCGATTCGGCACGGTGATGAAGGACCCCAAGCTGATTTC
CATGGGGAATGTGAAGAGACTGCATTGGCTATGGGTTCCTATCGCTTTCG
CCTATTTGACCACCTTCCACACCCTCTATCTCCTCAAGCGGGAATACAAA
CGCTTCTTGACCTTGCGTCTCACATTCCTCTCAGTCGGAGATCCCGACGT
GGACATCCAGAAATCATTTTCGGTCATGGTGGATCGAATCCCGTTAGAGT
ACAGGACTAACGCAGGGTTATATGCTCTGTTCGACGAGATTTTCCCTGGC
GATGTACACAGTGCTGTGGTTGCCTTAAAGGCAGATGAGCTTGAAAGCCT
GGTTCAAGACCGAACAGCAGTGGTGGATAAATTGGAGAGGGCCTTAGCTA
CTAGGGCGGTGACACATAAAGAGCCAATTATTTTCCTCCCCTCTGTGCAG
GGAAGTAAAGCGTGGAATTGGATCAGAGGGAAGGGGGAAATGGTCGAGGC
CGTCGCGCACCACCAACGGATCTTGGATGGGTTAAACAAAAAAATCACCA
AAATTCAAATAATGGTACGGCAGGCATCGGACGACCTGAACAAGAAGGAG
GAGGAATGGCAACAATCCAAGCGGAGCATACACCACCAGCAGAGGCAGCA
GGAGGAGATGCAGAGAGGCGTGAGCAGTTCCCAGGGCAGAAAGGCAGGGC
AGGGAGAAAGACCGGGCGAAGGGGCAGGAGAGATGGTGTCAGCGGGGTTG
TTGCACGGCGTGGGTAGTGGACGAATGAGTATGTCTCCTATG

Synonyms

Publications