jgi.p|Nanoce1779_2|571841, mRNA_1350 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571841
Unique NamemRNA_1350
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length510
Alignment locationscaffold_1:360304..360813 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571927
TrackFilteredModels2
ProteinId571841
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:360304..360813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571841gene_1350Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1350CDS_1350Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571841mRNA_1350-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1350 ID=mRNA_1350|Name=jgi.p|Nanoce1779_2|571841|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
ATGCCACCGAATGATGATCGTCGACCCCATTGTTGCCGGTCTCCCCGCTT
CAGGTTCACATCCCCACTCCTGCTGCTCTTGCTGCTGCTGGGGCCACCAC
TGCTGCAATCACCACCACCAGTGCTTCGACGGTCGTTTTTATACGCCGAT
ATGCTTGGAGGCTTGAGCAGCTCCCGCCGAATGCCATCTCCCAATGCAGG
GGCGGCCATCGAGTGTAGGACCACGGGCTGCTGCTGGTGCGGGACCGGAA
GGAGCCCCGCTGCAGCCATGAAGCACCCACCTTCCCAGTCGACATCTCCT
CCTTCTTCTCCACCAACTCGACCTCCTGCTTTCACTCCTTCCCCACCGCC
ATCTTGTACAATTGAATGCTCGTACGGCCCTTTTGCGTTACCATGGCTGA
CCTCCTCGTCGCGTGTGCCACCCATGACACTGTCCACCAATGTGTCCCGA
ATCTCACGAAGTCTCTTCATTCCGCCCACATCACACCCTTGCTTCTGCCT
GCTGGTGCTG
back to top

protein sequence of jgi.p|Nanoce1779_2|571841

>mRNA_1350-protein ID=mRNA_1350-protein|Name=jgi.p|Nanoce1779_2|571841|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MPPNDDRRPHCCRSPRFRFTSPLLLLLLLLGPPLLQSPPPVLRRSFLYAD
MLGGLSSSRRMPSPNAGAAIECRTTGCCWCGTGRSPAAAMKHPPSQSTSP
PSSPPTRPPAFTPSPPPSCTIECSYGPFALPWLTSSSRVPPMTLSTNVSR
ISRSLFIPPTSHPCFCLLVL
back to top

mRNA from alignment at scaffold_1:360304..360813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1350 ID=mRNA_1350|Name=jgi.p|Nanoce1779_2|571841|organism=Nannochloropsis oceanica|type=mRNA|length=510bp|location=Sequence derived from alignment at scaffold_1:360304..360813- (Nannochloropsis oceanica)
ATGCCACCGAATGATGATCGTCGACCCCATTGTTGCCGGTCTCCCCGCTT
CAGGTTCACATCCCCACTCCTGCTGCTCTTGCTGCTGCTGGGGCCACCAC
TGCTGCAATCACCACCACCAGTGCTTCGACGGTCGTTTTTATACGCCGAT
ATGCTTGGAGGCTTGAGCAGCTCCCGCCGAATGCCATCTCCCAATGCAGG
GGCGGCCATCGAGTGTAGGACCACGGGCTGCTGCTGGTGCGGGACCGGAA
GGAGCCCCGCTGCAGCCATGAAGCACCCACCTTCCCAGTCGACATCTCCT
CCTTCTTCTCCACCAACTCGACCTCCTGCTTTCACTCCTTCCCCACCGCC
ATCTTGTACAATTGAATGCTCGTACGGCCCTTTTGCGTTACCATGGCTGA
CCTCCTCGTCGCGTGTGCCACCCATGACACTGTCCACCAATGTGTCCCGA
ATCTCACGAAGTCTCTTCATTCCGCCCACATCACACCCTTGCTTCTGCCT
GCTGGTGCTG
back to top

Coding sequence (CDS) from alignment at scaffold_1:360304..360813-

>mRNA_1350 ID=mRNA_1350|Name=jgi.p|Nanoce1779_2|571841|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_1:360304..360813- (Nannochloropsis oceanica)
ATGCCACCGAATGATGATCGTCGACCCCATTGTTGCCGGTCTCCCCGCTT
CAGGTTCACATCCCCACTCCTGCTGCTCTTGCTGCTGCTGGGGCCACCAC
TGCTGCAATCACCACCACCAGTGCTTCGACGGTCGTTTTTATACGCCGAT
ATGCTTGGAGGCTTGAGCAGCTCCCGCCGAATGCCATCTCCCAATGCAGG
GGCGGCCATCGAGTGTAGGACCACGGGCTGCTGCTGGTGCGGGACCGGAA
GGAGCCCCGCTGCAGCCATGAAGCACCCACCTTCCCAGTCGACATCTCCT
CCTTCTTCTCCACCAACTCGACCTCCTGCTTTCACTCCTTCCCCACCGCC
ATCTTGTACAATTGAATGCTCGTACGGCCCTTTTGCGTTACCATGGCTGA
CCTCCTCGTCGCGTGTGCCACCCATGACACTGTCCACCAATGTGTCCCGA
ATCTCACGAAGTCTCTTCATTCCGCCCACATCACACCCTTGCTTCTGCCT
GCTGGTGCTG
back to top
Synonyms
Publications