jgi.p|Nanoce1779_2|576335, mRNA_135 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576335
Unique NamemRNA_135
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1589
Alignment locationscaffold_3:352198..353786 -

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Properties
Property NameValue
TranscriptId576421
TrackFilteredModels2
ProteinId576335
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:352198..353786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576335gene_135Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576335mRNA_135-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_135CDS_135Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_135 ID=mRNA_135|Name=jgi.p|Nanoce1779_2|576335|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp
AGTACAGGGCAAAAAGTAACCTAAGAATTCATGGCGGGTCCAGTCGCGGT
CAAGCAAGAGCCCGCTTGCAGCAGCACCAGAAGCAGCAGCATCAATAGCA
GCGGCAAAGACAACAAGCGCGGGGGGGGTTGGGAGGCATGCCAGGCACAT
GACAACGCCGTCGCCACGGCGACCACCACCACCCGCAGCACGCCGGGTAA
GAGCAGTAGGGGGAAGGGGAAGGCCATGGCTTACATCAAGAAGGAGGAAG
ACGTGGAAGAAAAGGCCGCGGCTGCTACCACGACGACGACGACGAGGAGC
AGCAGCAGGCCACGCCGCGTCCGCGAGGAGACACCTACGCCCTCTTCAGC
GGCTGCTGCATCTTTCCTCGCTAAGAGAGCCAAGAATGAAAAGCAGGATG
AGAGCGACGCTTTTTTTACCACTATCAACGACGACGACAAGGCAGCCCTC
CAAGACCTGCTGAAAAAATGGATCCAACCCGGAACGCTCCTTAAAATCAC
GGCCAGTGAGACAAGCCCTTATCCACAGCAGGAACGCCCAACTCCTTATG
AGGCCCTGTATGCCCGTGACCTTCTCGCGGCTTTACACGGAGAGCCGGAG
CGGGAAAAGTTAGAAGGGAATCGCAGTGGTCAGGGGACGTTGCTTGAGAA
GAGGGCTCGCTCGGTGTTGGACTCGTTGGTACGGACGATACTTAGTCAGA
ATACGACTGATGCACTGAGTAAGCGGGCTTTCGATAATTTGAAGAAACAT
TTTCCGACCTATAAGCAAGTTCTGGCGGCCAAGCCTGGAGAGGTGGAGGA
GGTGATCAAGTTTGCCGGGTTGTCTGAGATTAAAGTGGGGAGAATCCGCG
CGATTTTGACGACCGTGTTGAAGGAACGACCGAATGACTGCGTGGCTGGA
GAACCAAGCCTGGAGTTTTTGCGAGAGATGCCCACAGAGGAGATTAAGGA
GTATCTAGGGAATTTCAAGGGAGTTGGCCCTAAAACGATTGCATGCGTGC
TCTTGTTCACCATCGGCGTGGATGATTTTGCAGTGGATACGCATGTGTGG
CACATTGCCAAGAGGCTGGGATGGGTGCCAGGGGCAGCTTCTCGGGAAGA
TACATACAAACATTTGAATAATCGCATTCCGGACTGTGTTAAGTACAGCT
TGCATGTGTTGCTGGTGCTGCATGGGAAGAAGTGCGTGTCCTGCTGTAAG
GGTCGAACACAACTGGCCCCCGATGGCCCCTGTCCGTTGGGGAGGGTCGG
GAAAATGAGGGGAGAGCTAGCGGGGTTGGCTGCCGCTGCTGCTACAGCTG
CTGCTACTACTACTGTTGCTTGTGGTGGTGTTGTTGTTGGTTGCAATAAT
TGTGATAAAGCAGGGGTCGTGGTGAAGAAGGTGATGAAGGGCAGGGAGGA
TGTCGGGGGGAGGAAGAGGGATAAGATCAAGGCTATTACCATAAAGGAAG
AAATTGCGTGAGTAATAAAGTCATCTTTATCTATAACATCATATACCGAC
ATACCCATATTCAAATCACTATAAACATGACACATGTGTACTTAGAGAGA
TAGAAGCGAAAATGAAATGTAAAATTGAAATTAAAAAAT
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protein sequence of jgi.p|Nanoce1779_2|576335

>mRNA_135-protein ID=mRNA_135-protein|Name=jgi.p|Nanoce1779_2|576335|organism=Nannochloropsis oceanica|type=polypeptide|length=477bp
MAGPVAVKQEPACSSTRSSSINSSGKDNKRGGGWEACQAHDNAVATATTT
TRSTPGKSSRGKGKAMAYIKKEEDVEEKAAAATTTTTTRSSSRPRRVREE
TPTPSSAAAASFLAKRAKNEKQDESDAFFTTINDDDKAALQDLLKKWIQP
GTLLKITASETSPYPQQERPTPYEALYARDLLAALHGEPEREKLEGNRSG
QGTLLEKRARSVLDSLVRTILSQNTTDALSKRAFDNLKKHFPTYKQVLAA
KPGEVEEVIKFAGLSEIKVGRIRAILTTVLKERPNDCVAGEPSLEFLREM
PTEEIKEYLGNFKGVGPKTIACVLLFTIGVDDFAVDTHVWHIAKRLGWVP
GAASREDTYKHLNNRIPDCVKYSLHVLLVLHGKKCVSCCKGRTQLAPDGP
CPLGRVGKMRGELAGLAAAAATAAATTTVACGGVVVGCNNCDKAGVVVKK
VMKGREDVGGRKRDKIKAITIKEEIA*
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mRNA from alignment at scaffold_3:352198..353786-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_135 ID=mRNA_135|Name=jgi.p|Nanoce1779_2|576335|organism=Nannochloropsis oceanica|type=mRNA|length=1589bp|location=Sequence derived from alignment at scaffold_3:352198..353786- (Nannochloropsis oceanica)
AGTACAGGGCAAAAAGTAACCTAAGAATTCATGGCGGGTCCAGTCGCGGT
CAAGCAAGAGCCCGCTTGCAGCAGCACCAGAAGCAGCAGCATCAATAGCA
GCGGCAAAGACAACAAGCGCGGGGGGGGTTGGGAGGCATGCCAGGCACAT
GACAACGCCGTCGCCACGGCGACCACCACCACCCGCAGCACGCCGGGTAA
GAGCAGTAGGGGGAAGGGGAAGGCCATGGCTTACATCAAGAAGGAGGAAG
ACGTGGAAGAAAAGGCCGCGGCTGCTACCACGACGACGACGACGAGGAGC
AGCAGCAGGCCACGCCGCGTCCGCGAGGAGACACCTACGCCCTCTTCAGC
GGCTGCTGCATCTTTCCTCGCTAAGAGAGCCAAGAATGAAAAGCAGGATG
AGAGCGACGCTTTTTTTACCACTATCAACGACGACGACAAGGCAGCCCTC
CAAGACCTGCTGAAAAAATGGATCCAACCCGGAACGCTCCTTAAAATCAC
GGCCAGTGAGACAAGCCCTTATCCACAGCAGGAACGCCCAACTCCTTATG
AGGCCCTGTATGCCCGTGACCTTCTCGCGGCTTTACACGGAGAGCCGGAG
CGGGAAAAGTTAGAAGGGAATCGCAGTGGTCAGGGGACGTTGCTTGAGAA
GAGGGCTCGCTCGGTGTTGGACTCGTTGGTACGGACGATACTTAGTCAGA
ATACGACTGATGCACTGAGTAAGCGGGCTTTCGATAATTTGAAGAAACAT
TTTCCGACCTATAAGCAAGTTCTGGCGGCCAAGCCTGGAGAGGTGGAGGA
GGTGATCAAGTTTGCCGGGTTGTCTGAGATTAAAGTGGGGAGAATCCGCG
CGATTTTGACGACCGTGTTGAAGGAACGACCGAATGACTGCGTGGCTGGA
GAACCAAGCCTGGAGTTTTTGCGAGAGATGCCCACAGAGGAGATTAAGGA
GTATCTAGGGAATTTCAAGGGAGTTGGCCCTAAAACGATTGCATGCGTGC
TCTTGTTCACCATCGGCGTGGATGATTTTGCAGTGGATACGCATGTGTGG
CACATTGCCAAGAGGCTGGGATGGGTGCCAGGGGCAGCTTCTCGGGAAGA
TACATACAAACATTTGAATAATCGCATTCCGGACTGTGTTAAGTACAGCT
TGCATGTGTTGCTGGTGCTGCATGGGAAGAAGTGCGTGTCCTGCTGTAAG
GGTCGAACACAACTGGCCCCCGATGGCCCCTGTCCGTTGGGGAGGGTCGG
GAAAATGAGGGGAGAGCTAGCGGGGTTGGCTGCCGCTGCTGCTACAGCTG
CTGCTACTACTACTGTTGCTTGTGGTGGTGTTGTTGTTGGTTGCAATAAT
TGTGATAAAGCAGGGGTCGTGGTGAAGAAGGTGATGAAGGGCAGGGAGGA
TGTCGGGGGGAGGAAGAGGGATAAGATCAAGGCTATTACCATAAAGGAAG
AAATTGCGTGAGTAATAAAGTCATCTTTATCTATAACATCATATACCGAC
ATACCCATATTCAAATCACTATAAACATGACACATGTGTACTTAGAGAGA
TAGAAGCGAAAATGAAATGTAAAATTGAAATTAAAAAAT
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Coding sequence (CDS) from alignment at scaffold_3:352198..353786-

>mRNA_135 ID=mRNA_135|Name=jgi.p|Nanoce1779_2|576335|organism=Nannochloropsis oceanica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_3:352198..353786- (Nannochloropsis oceanica)
ATGGCGGGTCCAGTCGCGGTCAAGCAAGAGCCCGCTTGCAGCAGCACCAG
AAGCAGCAGCATCAATAGCAGCGGCAAAGACAACAAGCGCGGGGGGGGTT
GGGAGGCATGCCAGGCACATGACAACGCCGTCGCCACGGCGACCACCACC
ACCCGCAGCACGCCGGGTAAGAGCAGTAGGGGGAAGGGGAAGGCCATGGC
TTACATCAAGAAGGAGGAAGACGTGGAAGAAAAGGCCGCGGCTGCTACCA
CGACGACGACGACGAGGAGCAGCAGCAGGCCACGCCGCGTCCGCGAGGAG
ACACCTACGCCCTCTTCAGCGGCTGCTGCATCTTTCCTCGCTAAGAGAGC
CAAGAATGAAAAGCAGGATGAGAGCGACGCTTTTTTTACCACTATCAACG
ACGACGACAAGGCAGCCCTCCAAGACCTGCTGAAAAAATGGATCCAACCC
GGAACGCTCCTTAAAATCACGGCCAGTGAGACAAGCCCTTATCCACAGCA
GGAACGCCCAACTCCTTATGAGGCCCTGTATGCCCGTGACCTTCTCGCGG
CTTTACACGGAGAGCCGGAGCGGGAAAAGTTAGAAGGGAATCGCAGTGGT
CAGGGGACGTTGCTTGAGAAGAGGGCTCGCTCGGTGTTGGACTCGTTGGT
ACGGACGATACTTAGTCAGAATACGACTGATGCACTGAGTAAGCGGGCTT
TCGATAATTTGAAGAAACATTTTCCGACCTATAAGCAAGTTCTGGCGGCC
AAGCCTGGAGAGGTGGAGGAGGTGATCAAGTTTGCCGGGTTGTCTGAGAT
TAAAGTGGGGAGAATCCGCGCGATTTTGACGACCGTGTTGAAGGAACGAC
CGAATGACTGCGTGGCTGGAGAACCAAGCCTGGAGTTTTTGCGAGAGATG
CCCACAGAGGAGATTAAGGAGTATCTAGGGAATTTCAAGGGAGTTGGCCC
TAAAACGATTGCATGCGTGCTCTTGTTCACCATCGGCGTGGATGATTTTG
CAGTGGATACGCATGTGTGGCACATTGCCAAGAGGCTGGGATGGGTGCCA
GGGGCAGCTTCTCGGGAAGATACATACAAACATTTGAATAATCGCATTCC
GGACTGTGTTAAGTACAGCTTGCATGTGTTGCTGGTGCTGCATGGGAAGA
AGTGCGTGTCCTGCTGTAAGGGTCGAACACAACTGGCCCCCGATGGCCCC
TGTCCGTTGGGGAGGGTCGGGAAAATGAGGGGAGAGCTAGCGGGGTTGGC
TGCCGCTGCTGCTACAGCTGCTGCTACTACTACTGTTGCTTGTGGTGGTG
TTGTTGTTGGTTGCAATAATTGTGATAAAGCAGGGGTCGTGGTGAAGAAG
GTGATGAAGGGCAGGGAGGATGTCGGGGGGAGGAAGAGGGATAAGATCAA
GGCTATTACCATAAAGGAAGAAATTGCGTGA
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Synonyms
Publications