jgi.p|Nanoce1779_2|571838, mRNA_1349 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571838
Unique Name	mRNA_1349
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1407
Alignment location	scaffold_1:358467..359953 +

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Properties


Property Name	Value
TranscriptId	571924
Track	FilteredModels2
ProteinId	571838

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:358467..359953 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571838	gene_1349	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571838	mRNA_1349-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1349	CDS_1349	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:358467..359953+
coding sequence from alignment at scaffold_1:358467..359953+

mRNA sequence

>mRNA_1349 ID=mRNA_1349|Name=jgi.p|Nanoce1779_2|571838|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp
GCTGCTGGTGGTGGTGGTGCTGCTGCTGGTGCTCTTGCTGCTGCTGGTGC
TAGTGTCATTGACCCACGCCCCGTTAGTGGTCTCAGCCTGCGCGCTTTGA
TGCAGTGGCGACGAGGAGAAGGACGATGAAGATACGGTGGATGTAGAGGT
AATTCGCCTCCTTCCTACCGTCTCGGCAGGCGAAACTACAGGCACAGAGC
TCCCTCCTTCCCCTCCTCCAGCCCCACCATGAGCAGCCGCGCTGTGTCGT
CGTCGCCGTTGCGCCGAGGGACGAAAACATTTGATCCGATCCCACCGCAG
CCGCTGCTCGATCGCTCGTAGCTCTTCCAGGCTCTGTAAATGCTGAAATT
CAGTCTCGGCGTGCTCGGCGATTGGAAAGCCAAAATGATCTCGGAGCACG
GGACGAGGTGAGAGTGGTATGGCTTTGGGGAGTTGTGAGGAAGGAGAGGA
GGAGAAAGAAGACACCCCAGCCTCTGCGTTGGCGTAGGAAGTAGAATCCT
CTAACCCTTCGTTCTCCCCGTCTTCCTTGCCTTGCTTTCCCTCCACGTCT
TCATCCCCCTCTACGCTGATATGTCTCTGTCCGCTCTTTCGCTGCTGTCC
CCCTTTCTCCCTCGCGCCTTCCCTTTCCTCCTCCTCCTTCTCCACCAAGG
CCACCGTCTCCCCCACCCAGGTCGCCACATGAATGAACACTCCAGAAATC
ACCTCCCCCGTCACCGGTGCTGTGCATGGATACCATCGATCTACCCTCCC
ATCCCGAAGCTCCACTCGCGCACTCGCCACCCGTGACACATTGAAGTCGT
AAATGGAATAACTGTCCATTTCCTCCTCGTCCTCCTCCTCCGCCCCTTGC
CCCCGGTTCTTGGCTGGCCCGGGGCCTACAGGTCCGCTTTCAAATAAATC
GACCTGTAGCATCCCTGCTGCCGATCCGGGTAGCCGCTCCGGCGGTAGTC
GCGAGGCGGGTCGTCGTGCTGAAACCGAGGACGCTGCATTCGCTGCGTCA
CTCGTGATCCCACCTTTACAGTCACCCTCCTTTTCCTCATCACCCTCCTC
CACCTTCTCCTCTTCCTCGTCATTATCATTGTCGCTGTCACTCAACAGTC
CCCATTCGGCACGAAAACTCTCGGCGCCCAACGGAGTGGGCCATAGGCCT
TCAGGTGGAAGTTGAAATGCAGTCGACCGTCGATGCCGCCCCTCATATGT
CAATAGCCAGTAGTACGCTCGCCGCCGTGACAGCCCACTTTTGGGAATAG
ATTCGATGCCTGTGTGGAGTGTGATGGGGGGGTGCACATGGTCTTGGCTG
TAACACCGTAGTCCCCGCATCTCCACGGTCAAGGACGGGTCTCGCTTGGC
CGTGCGCCCCATGGCTAGGGCGTACCTTTTTTGCAGCCTGTAGATGTGAT
GTGTGCT

protein sequence of jgi.p|Nanoce1779_2|571838

>mRNA_1349-protein ID=mRNA_1349-protein|Name=jgi.p|Nanoce1779_2|571838|organism=Nannochloropsis oceanica|type=polypeptide|length=72bp
MSLSALSLLSPFLPRAFPFLLLLLHQGHRLPHPGRHMNEHSRNHLPRHRC
CAWIPSIYPPIPKLHSRTRHP*

mRNA from alignment at scaffold_1:358467..359953+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1349 ID=mRNA_1349|Name=jgi.p|Nanoce1779_2|571838|organism=Nannochloropsis oceanica|type=mRNA|length=1487bp|location=Sequence derived from alignment at scaffold_1:358467..359953+ (Nannochloropsis oceanica)
GCTGCTGGTGGTGGTGGTGCTGCTGCTGGTGCTCTTGCTGCTGCTGGTGC
TAGTGTCATTGACCCACGCCCCGTTAGTGGTCTCAGCCTGCGCGCTTTGA
TGCAGTGGCGACGAGGAGAAGGACGATGAAGATACGGTGGATGTAGAGGT
AATTCGCCTCCTTCCTACCGTCTCGGCAGGCGAAACTACAGGCACAGAGC
TCCCTCCTTCCCCTCCTCCAGCCCCACCATGAGCAGCCGCGCTGTGTCGT
CGTCGCCGTTGCGCCGAGGGACGAAAACATTTGATCCGATCCCACCGCAG
CCGCTGCTCGATCGCTCGTAGCTCTTCCAGGCTCTGTAAATGCTGAAATT
CAGTCTCGGCGTGCTCGGCGATTGGAAAGCCAAAATGATCTCGGAGCACG
GGACGAGGTGAGAGTGGTATGGCTTTGGGGAGTTGTGAGGAAGGAGAGGA
GGAGAAAGAAGACACCCCAGCCTCTGCGTTGGCGTAGGAAGTAGAATCCT
CTAACCCTTCGTTCTCCCCGTCTTCCTTGCCTTGCTTTCCCTCCACGTCT
TCATCCCCCTCTACGCTGATATGTCTCTGTCCGCTCTTTCGCTGCTGTCC
CCCTTTCTCCCTCGCGCCTTCCCTTTCCTCCTCCTCCTTCTCCACCAAGG
CCACCGTCTCCCCCACCCAGGTCGCCACATGAATGAACACTCCAGAAATC
ACCTCCCCCGTCACCGGTGCTGTGCATGGATACCATCGATCTACCCTCCC
ATCCCGAAGCTCCACTCGCGCACTCGCCACCCGTGACACATTGAAGTCGT
AAATGGAATAACTGTCCATTTCCTCCTCGTCCTCCTCCTCCGCCCCTTGC
CCCCGGTTCTTGGCTGGCCCGGGGCCTACAGGTCCGCTTTCAAATAAATC
GACCTGTAGCATCCCTGCTGCCGATCCGGGTAGCCGCTCCGGCGGTAGTC
GCGAGGCGGGTCGTCGTGCTGAAACCGAGGACGCTGCATTCGCTGCGTCA
CTCGTGATCCCACCTTTACAGTCACCCTCCTTTTCCTCATCACCCTCCTC
CACCTTCTCCTCTTCCTCGTCATTATCATTGTCGCTGTCACTCAACAGTC
CCCATTCGGCACGAAAACTCTCGGCGCCCAACGGAGTGGGCCATAGGCCT
TCAGGTGGAAGTTGAAATGCAGTCGACCGTCGATGCCGCCCCTCATATGT
CAATAGCCAGTAGTACGCTCGCCGCCGTGACAGCCCACTTTTGGGAATAG
ATTCGATGCCTGTGTGGAGTGTGATGGGGGGGTGCACATGGTCTGGTTGC
ATCATTAGTCATCGGGCCCCATCATCAAATCAGGGGGCGGGCTTCCTAAC
TAGCTCTCAAAGAGAATTTTACCTTGGCTGTAACACCGTAGTCCCCGCAT
CTCCACGGTCAAGGACGGGTCTCGCTTGGCCGTGCGCCCCATGGCTAGGG
CGTACCTTTTTTGCAGCCTGTAGATGTGATGTGTGCT

Coding sequence (CDS) from alignment at scaffold_1:358467..359953+

>mRNA_1349 ID=mRNA_1349|Name=jgi.p|Nanoce1779_2|571838|organism=Nannochloropsis oceanica|type=CDS|length=216bp|location=Sequence derived from alignment at scaffold_1:358467..359953+ (Nannochloropsis oceanica)
ATGTCTCTGTCCGCTCTTTCGCTGCTGTCCCCCTTTCTCCCTCGCGCCTT
CCCTTTCCTCCTCCTCCTTCTCCACCAAGGCCACCGTCTCCCCCACCCAG
GTCGCCACATGAATGAACACTCCAGAAATCACCTCCCCCGTCACCGGTGC
TGTGCATGGATACCATCGATCTACCCTCCCATCCCGAAGCTCCACTCGCG
CACTCGCCACCCGTGA

Synonyms

Publications