jgi.p|Nanoce1779_2|535343, mRNA_1348 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|535343
Unique NamemRNA_1348
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2155
Alignment locationscaffold_1:355985..358370 -

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Properties
Property NameValue
TranscriptId535429
TrackFilteredModels2
ProteinId535343
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:355985..358370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535343gene_1348Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535343mRNA_1348-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1348CDS_1348Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1348 ID=mRNA_1348|Name=jgi.p|Nanoce1779_2|535343|organism=Nannochloropsis oceanica|type=mRNA|length=2155bp
TTAAAGGCCTTAGTCTGGGACGGCGTACCCGCGGATCTTCGTGATTCTGT
CTACCAATGGTTGAGCGGCGCGCAAGCCAAACGAGAGGCAGTCGGTGTCG
GTTACTATTCTACCTTGGCCAAGGCAAGCGAAGAAGAAAATCTGGTGGCA
ATGGATATAGAGCTTGATTTGGGCCGGGCGTTCGCCGATGCCGATGCTGC
GATTAATACAGCGGAGGGGAGGGCGGCGTTGCGGAGGGTGCTGAGGACGT
ACGCATTAAGGAACCCGTCGGTGGGTTACTGCCAGGGGATGAATTTCATC
GCTGGCTTGTTGCTGTTGGTGGTGAGTGAGGAGACTGCGTTTTGGTCCCT
GGCGCATATGTGCGAAGAAGTGAGCCCCTTGTGTTTTTCCCCCCCCTTGC
TGGGGACCCGGGCGGACATGCGGGCGTTGGGTGAATTGTTAAAAGCAGAG
CTGCCGGCGTTATATCGGCATTGTGATGGGTTGTATCTGAATTTAGAGTT
GATGGCAGGTCATTGGTTACTGGTGTACTTTATTAATATATTCCCACCGC
CTGTGGCGTTGAGGATCTTGGAGGTGAGTATGGCAGAAGGTTCCGATGTG
ACATTCGCGGTTGCCTTGGCCTTCTTGAGGGGTTTGGAGGGGGAGTTATT
GGCATGCGATGATCTGCATGAGTTGAGTCAGTTGGTGCGAAGGAGGCAAG
CAGCCATGTATGATGCTGATGTGTTGTTGCACGCTGCTCGGGTGCAACTG
AGGCATATGAGGTCGACGTTACGTATTTTACGGGCGTGGCACTTGGGGGA
TTTGATGAAACATGAGGATGAGATTGAGCAGACATCTTATCGACGCCAGC
AGCAGCAGGAGGGAGGGCGGGCCGGAGCAGCCGGCGGAGGAGGGAGAGGA
GGCGGAGGAGCGGCAGGAGGATACATGCCTTATCTGGGAGCGGGGGCGGG
TGGTGGTCGAGAGGCAGTGGAAGGAAGCTGTAGTGGGGTTAGGACTGGAG
GAGGTGGCGCGGGAGGAGTTGTACAACGGAATGATGATCGGATGCGGCGC
TTGGTGCGACGGTCTGTGGCAAGGGGGCTGTCGCTGGTGGGCCTGTCGTA
CTGGGTGAGCCCGCACACGCGGCGGCATTGGGATCAGATGGCGTTTCAAG
TCACACATCGCCTCTTTTTGGAAGAGGGTCGATTTCGCTCCATGCGGTTC
ACGCCCGTGTTGGTTGACTTGATGTCGTGGTGGATGAATTGGCCCATCTT
GATGAGACGTACGGGAGGGGGTGAACTACCTGCCCCTAACCCTGCCTCCC
CTCCGCGCCGCCCAGCCGCTGGAGCGTCGAGGCACTTGAGCTCTGTCCGC
GCCATCCCCCTTCGCCGGCACAGCAGCAGTCCAGTCAAGTAATGTACGCG
AGAAGAAAAATGGAGAGACGAAGAAGCGCAAGAGGTAAAATGAGTGAGTG
GGAAAAATCGTTTACAGACGGAACGGGAGTGAGCGGGCTTTAAAATGGAT
CAAACTAGAAATCTGGTAAACGTGATAGGAGGCATAAAAAAGGCATTATA
TCTTGTTTGTCCGCATATCTGTGTATAAAGGCGCGTAAAAATAGACGAAG
GATAGCCAGCAGAACGAGATGTTTTAACTCAGCCAGCAGCAACGCAAGCA
GACAAAGAACAAGAAGCAGTGTATGTAAAGAGCGAACCGACACGCCTACT
GGGCAGCGATATTGACACGAAACAATCAGAAAAGTGTTTTATATTGCAAT
GGTTCTATGCGTGCCATCGCTGTCATGTCGAATTCTCGATAGTTTGGGGG
AAATTAGTCGTCGTCCGTCTTGCTTCCCGAAGCGAATGCAAGGTGACTTA
ATTCGACCAACAGTCGGCCATATAAACCAAACAGCTGCTGCATCGCATGT
CATTCATTTGATTTTACTTTTCGCGATAATTGACAATCATCTTGAGCTCT
GCCGTGGAACGCGGTATCCAGTAGCGGGTCTTGGTGCCCATGCCCTTGCT
CTTGAGCAGACGGTGGTCCAAAAGCTCATCAAACAGCTGTCGAAGGTTCC
CGTGGCTTCGAGAAATCATCTTATCCGCACATTGCTGCGCCAAATCTTCA
AAGGTAATCCCGCGTTCTGTTGATGCTGTTTCCGCACCCGCCGCACCATC
TACCC
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protein sequence of jgi.p|Nanoce1779_2|535343

>mRNA_1348-protein ID=mRNA_1348-protein|Name=jgi.p|Nanoce1779_2|535343|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MDIELDLGRAFADADAAINTAEGRAALRRVLRTYALRNPSVGYCQGMNFI
AGLLLLVVSEETAFWSLAHMCEEVSPLCFSPPLLGTRADMRALGELLKAE
LPALYRHCDGLYLNLELMAGHWLLVYFINIFPPPVALRILEVSMAEGSDV
TFAVALAFLRGLEGELLACDDLHELSQLVRRRQAAMYDADVLLHAARVQL
RHMRSTLRILRAWHLGDLMKHEDEIEQTSYRRQQQQEGGRAGAAGGGGRG
GGGAAGGYMPYLGAGAGGGREAVEGSCSGVRTGGGGAGGVVQRNDDRMRR
LVRRSVARGLSLVGLSYWVSPHTRRHWDQMAFQVTHRLFLEEGRFRSMRF
TPVLVDLMSWWMNWPILMRRTGGGELPAPNPASPPRRPAAGASRHLSSVR
AIPLRRHSSSPVK*
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mRNA from alignment at scaffold_1:355985..358370-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1348 ID=mRNA_1348|Name=jgi.p|Nanoce1779_2|535343|organism=Nannochloropsis oceanica|type=mRNA|length=2386bp|location=Sequence derived from alignment at scaffold_1:355985..358370- (Nannochloropsis oceanica)
TTAAAGGCCTTAGTCTGGGACGGCGTACCCGCGGATCTTCGTGATTCTGT
CTACCAATGGTTGAGCGGCGCGCAAGCCAAACGAGAGGCAGTCGGTGTCG
GTTACTATTCTACCTTGGCCAAGGCAAGCGAAGAAGAAAATCTGGGTCTG
GGGGTGGTCGGAGAGGAGGGGGAGGATGAATCATGGGTGTGTGTCAGCAG
GGAGAGGGAGGGAGCGGGGGTCGGAGGTGGAGGTGGAGGAGGATGGAGGG
AGGGAAAGAGGCATTACGGTGTAGAAATGGGTGGGGGTGCGGCAGGATTA
GAAGTAGGGGGAGTGAAGGGGGGAATGGAGATGGATATTTTGATGCCGGA
GCTGGATGCGGCGTGGGGGGCGAAAGTGGCAATGGATATAGAGCTTGATT
TGGGCCGGGCGTTCGCCGATGCCGATGCTGCGATTAATACAGCGGAGGGG
AGGGCGGCGTTGCGGAGGGTGCTGAGGACGTACGCATTAAGGAACCCGTC
GGTGGGTTACTGCCAGGGGATGAATTTCATCGCTGGCTTGTTGCTGTTGG
TGGTGAGTGAGGAGACTGCGTTTTGGTCCCTGGCGCATATGTGCGAAGAA
GTGAGCCCCTTGTGTTTTTCCCCCCCCTTGCTGGGGACCCGGGCGGACAT
GCGGGCGTTGGGTGAATTGTTAAAAGCAGAGCTGCCGGCGTTATATCGGC
ATTGTGATGGGTTGTATCTGAATTTAGAGTTGATGGCAGGTCATTGGTTA
CTGGTGTACTTTATTAATATATTCCCACCGCCTGTGGCGTTGAGGATCTT
GGAGGTGAGTATGGCAGAAGGTTCCGATGTGACATTCGCGGTTGCCTTGG
CCTTCTTGAGGGGTTTGGAGGGGGAGTTATTGGCATGCGATGATCTGCAT
GAGTTGAGTCAGTTGGTGCGAAGGAGGCAAGCAGCCATGTATGATGCTGA
TGTGTTGTTGCACGCTGCTCGGGTGCAACTGAGGCATATGAGGTCGACGT
TACGTATTTTACGGGCGTGGCACTTGGGGGATTTGATGAAACATGAGGAT
GAGATTGAGCAGACATCTTATCGACGCCAGCAGCAGCAGGAGGGAGGGCG
GGCCGGAGCAGCCGGCGGAGGAGGGAGAGGAGGCGGAGGAGCGGCAGGAG
GATACATGCCTTATCTGGGAGCGGGGGCGGGTGGTGGTCGAGAGGCAGTG
GAAGGAAGCTGTAGTGGGGTTAGGACTGGAGGAGGTGGCGCGGGAGGAGT
TGTACAACGGAATGATGATCGGATGCGGCGCTTGGTGCGACGGTCTGTGG
CAAGGGGGCTGTCGCTGGTGGGCCTGTCGTACTGGGTGAGCCCGCACACG
CGGCGGCATTGGGATCAGATGGCGTTTCAAGTCACACATCGCCTCTTTTT
GGAAGAGGGTCGATTTCGCTCCATGCGGTTCACGCCCGTGTTGGTTGACT
TGATGTCGTGGTGGATGAATTGGCCCATCTTGATGAGACGTACGGGAGGG
GGTGAACTACCTGCCCCTAACCCTGCCTCCCCTCCGCGCCGCCCAGCCGC
TGGAGCGTCGAGGCACTTGAGCTCTGTCCGCGCCATCCCCCTTCGCCGGC
ACAGCAGCAGTCCAGTCAAGTAATGTACGCGAGAAGAAAAATGGAGAGAC
GAAGAAGCGCAAGAGGTAAAATGAGTGAGTGGGAAAAATCGTTTACAGAC
GGAACGGGAGTGAGCGGGCTTTAAAATGGATCAAACTAGAAATCTGGTAA
ACGTGATAGGAGGCATAAAAAAGGCATTATATCTTGTTTGTCCGCATATC
TGTGTATAAAGGCGCGTAAAAATAGACGAAGGATAGCCAGCAGAACGAGA
TGTTTTAACTCAGCCAGCAGCAACGCAAGCAGACAAAGAACAAGAAGCAG
TGTATGTAAAGAGCGAACCGACACGCCTACTGGGCAGCGATATTGACACG
AAACAATCAGAAAAGTGTTTTATATTGCAATGGTTCTATGCGTGCCATCG
CTGTCATGTCGAATTCTCGATAGTTTGGGGGAAATTAGTCGTCGTCCGTC
TTGCTTCCCGAAGCGAATGCAAGGTGACTTAATTCGACCAACAGTCGGCC
ATATAAACCAAACAGCTGCTGCATCGCATGTCATTCATTTGATTTTACTT
TTCGCGATAATTGACAATCATCTTGAGCTCTGCCGTGGAACGCGGTATCC
AGTAGCGGGTCTTGGTGCCCATGCCCTTGCTCTTGAGCAGACGGTGGTCC
AAAAGCTCATCAAACAGCTGTCGAAGGTTCCCGTGGCTTCGAGAAATCAT
CTTATCCGCACATTGCTGCGCCAAATCTTCAAAGGTAATCCCGCGTTCTG
TTGATGCTGTTTCCGCACCCGCCGCACCATCTACCC
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Coding sequence (CDS) from alignment at scaffold_1:355985..358370-

>mRNA_1348 ID=mRNA_1348|Name=jgi.p|Nanoce1779_2|535343|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_1:355985..358370- (Nannochloropsis oceanica)
ATGGATATAGAGCTTGATTTGGGCCGGGCGTTCGCCGATGCCGATGCTGC
GATTAATACAGCGGAGGGGAGGGCGGCGTTGCGGAGGGTGCTGAGGACGT
ACGCATTAAGGAACCCGTCGGTGGGTTACTGCCAGGGGATGAATTTCATC
GCTGGCTTGTTGCTGTTGGTGGTGAGTGAGGAGACTGCGTTTTGGTCCCT
GGCGCATATGTGCGAAGAAGTGAGCCCCTTGTGTTTTTCCCCCCCCTTGC
TGGGGACCCGGGCGGACATGCGGGCGTTGGGTGAATTGTTAAAAGCAGAG
CTGCCGGCGTTATATCGGCATTGTGATGGGTTGTATCTGAATTTAGAGTT
GATGGCAGGTCATTGGTTACTGGTGTACTTTATTAATATATTCCCACCGC
CTGTGGCGTTGAGGATCTTGGAGGTGAGTATGGCAGAAGGTTCCGATGTG
ACATTCGCGGTTGCCTTGGCCTTCTTGAGGGGTTTGGAGGGGGAGTTATT
GGCATGCGATGATCTGCATGAGTTGAGTCAGTTGGTGCGAAGGAGGCAAG
CAGCCATGTATGATGCTGATGTGTTGTTGCACGCTGCTCGGGTGCAACTG
AGGCATATGAGGTCGACGTTACGTATTTTACGGGCGTGGCACTTGGGGGA
TTTGATGAAACATGAGGATGAGATTGAGCAGACATCTTATCGACGCCAGC
AGCAGCAGGAGGGAGGGCGGGCCGGAGCAGCCGGCGGAGGAGGGAGAGGA
GGCGGAGGAGCGGCAGGAGGATACATGCCTTATCTGGGAGCGGGGGCGGG
TGGTGGTCGAGAGGCAGTGGAAGGAAGCTGTAGTGGGGTTAGGACTGGAG
GAGGTGGCGCGGGAGGAGTTGTACAACGGAATGATGATCGGATGCGGCGC
TTGGTGCGACGGTCTGTGGCAAGGGGGCTGTCGCTGGTGGGCCTGTCGTA
CTGGGTGAGCCCGCACACGCGGCGGCATTGGGATCAGATGGCGTTTCAAG
TCACACATCGCCTCTTTTTGGAAGAGGGTCGATTTCGCTCCATGCGGTTC
ACGCCCGTGTTGGTTGACTTGATGTCGTGGTGGATGAATTGGCCCATCTT
GATGAGACGTACGGGAGGGGGTGAACTACCTGCCCCTAACCCTGCCTCCC
CTCCGCGCCGCCCAGCCGCTGGAGCGTCGAGGCACTTGAGCTCTGTCCGC
GCCATCCCCCTTCGCCGGCACAGCAGCAGTCCAGTCAAGTAA
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Synonyms
Publications