jgi.p|Nanoce1779_2|522296, mRNA_1347 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|522296
Unique Name	mRNA_1347
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1083
Alignment location	scaffold_1:354916..356226 +

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Properties


Property Name	Value
TranscriptId	522382
Track	FilteredModels2
ProteinId	522296

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:354916..356226 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522296	gene_1347	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522296	mRNA_1347-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1347	CDS_1347	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:354916..356226+
coding sequence from alignment at scaffold_1:354916..356226+

mRNA sequence

>mRNA_1347 ID=mRNA_1347|Name=jgi.p|Nanoce1779_2|522296|organism=Nannochloropsis oceanica|type=mRNA|length=1083bp
ATGGCGTTACTAAATCAAGTAAGAAGGCTGGATGTACCCACTATTCAGGA
GGTGCGTTCAATCGTTTGTTCGCTTGTGCCTTCCCATGCGGATGAAAGGA
AGAAGTTGGAGGATCGGTATGTTGCCACATTTCCTGCGTGGGTGGATGAT
TTGCTGGCAGGTTTCAATCTACTTCTTTATGGGGTAGGTTCTAAGAGGAC
AATTTTGGAAAGATTTGCCGAATACCTGAGGAAAGAGGGAGCGGTGGTGG
TTGTGGACGGGTTGGACCCGAGGGCGGGGAAAGCGAGCCGATTGTTGGAG
GTAGCTACAGAAATGGGGCATGGACCCGCGGCAGTACGATCTTGTACCTT
GCGCTCGGCGCAGCAGCAGCAGCAGGGGGATCCAGACGTGCCGTTGTTTT
TTGTGATACATAGTTTGGATTGTCGAAATATGTGGCAGCATAAGGGGGGG
CATAGCATGCTGGAAGCCTTAATTGAGCTGGTCAATCGTCCAGGCGTGCA
TTTGGTGACATCGGTCGATCATTTAAATGCGCCATTGCTCTTCTCTGCGC
AGCATCTTGAGGCAATGAGCTGGGTATGGCATGATGTCACGACTCTAGCA
CCGTATGTGCCTGAACTAGCCGCCCATTCCAGCGAGAAACACGGGGGCCA
ATCGTACCTGCCGGCAGGGGAAGGACTCAAGTACCTGTTGCAATGCGTGA
CGAAGCGGCATTTGGAACTGCTACAATTCCTCGCTGTCCGTCAATTAGAG
GAGGAGGTGAAGGAGGCCAATCGTCGCGTGGAGACGGCGGCGGCCAACAA
GCGCCGGCGGAAGGAGGAGGCAACCAATGGTGTGGGAGGGAGGGTAGATG
GTGCGGCGGGTGCGGAAACAGCATCAACAGAACGCGGGATTACCTTTGAA
GATTTGGCGCAGCAATGTGCGGATAAGATGATTTCTCGAAGCCACGGGAA
CCTTCGACAGCTGTTTGATGAGCTTTTGGACCACCGTCTGCTCAAGAGCA
AGGGCATGGGCACCAAGACCCGCTACTGGATACCGCGTTCCACGGCAGAG
CTCAAGATGATTGTCAATTATCGCGAAAAGTAA

protein sequence of jgi.p|Nanoce1779_2|522296

>mRNA_1347-protein ID=mRNA_1347-protein|Name=jgi.p|Nanoce1779_2|522296|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MALLNQVRRLDVPTIQEVRSIVCSLVPSHADERKKLEDRYVATFPAWVDD
LLAGFNLLLYGVGSKRTILERFAEYLRKEGAVVVVDGLDPRAGKASRLLE
VATEMGHGPAAVRSCTLRSAQQQQQGDPDVPLFFVIHSLDCRNMWQHKGG
HSMLEALIELVNRPGVHLVTSVDHLNAPLLFSAQHLEAMSWVWHDVTTLA
PYVPELAAHSSEKHGGQSYLPAGEGLKYLLQCVTKRHLELLQFLAVRQLE
EEVKEANRRVETAAANKRRRKEEATNGVGGRVDGAAGAETASTERGITFE
DLAQQCADKMISRSHGNLRQLFDELLDHRLLKSKGMGTKTRYWIPRSTAE
LKMIVNYREK*

mRNA from alignment at scaffold_1:354916..356226+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1347 ID=mRNA_1347|Name=jgi.p|Nanoce1779_2|522296|organism=Nannochloropsis oceanica|type=mRNA|length=1311bp|location=Sequence derived from alignment at scaffold_1:354916..356226+ (Nannochloropsis oceanica)
ATGGCGTTACTAAATCAAGTAAGAAGGCTGGATGTACCCACTATTCAGGA
GGTGCGTTCAATCGTTTGTTCGCTTGTGCCTTCCCATGCGGATGAAAGGA
AGAAGTTGGAGGATCGGTATGTTGCCACATTTCCTGCGTGGGTGGATGAT
TTGCTGGCAGGTTTCAATCTACTTCTTTATGGGGTAGGTTCTAAGAGGAC
AATTTTGGAAAGATTTGCCGAATACCTGAGGAAAGAGGGAGCGGTGGTGG
TTGTGGACGGGTTGGACCCGAGGGCGGGGAAAGCGAGCCGATTGTTGGAG
GTAGCTACAGAAATGGGGCATGGACCCGTGACTGCAGTGGATGAGGCAAC
AGCAGGAGGGTGGGCGGGCGTGGAGGCGTTGTGGGCAACAGCGGCGGTAG
GGGGGACGGGGGCTGAGGGAGAGAAGGGATCTGTGGCGGGGTCTTTGTCG
TTCTCGTCCTTGTGGGGAAGGGAGATGAGCTTCGGGGGAGGTGGAGGTGG
AGGGGGAGGGGGAGGGTTGTCGTTGCCTTCCAATCAGGGCAAGCGCCGAC
AGAAGGCGGCAGTACGATCTTGTACCTTGCGCTCGGCGCAGCAGCAGCAG
CAGGGGGATCCAGACGTGCCGTTGTTTTTTGTGATACATAGTTTGGATTG
TCGAAATATGTGGCAGCATAAGGGGGGGCATAGCATGCTGGAAGCCTTAA
TTGAGCTGGTCAATCGTCCAGGCGTGCATTTGGTGACATCGGTCGATCAT
TTAAATGCGCCATTGCTCTTCTCTGCGCAGCATCTTGAGGCAATGAGCTG
GGTATGGCATGATGTCACGACTCTAGCACCGTATGTGCCTGAACTAGCCG
CCCATTCCAGCGAGAAACACGGGGGCCAATCGTACCTGCCGGCAGGGGAA
GGACTCAAGTACCTGTTGCAATGCGTGACGAAGCGGCATTTGGAACTGCT
ACAATTCCTCGCTGTCCGTCAATTAGAGGAGGAGGTGAAGGAGGCCAATC
GTCGCGTGGAGACGGCGGCGGCCAACAAGCGCCGGCGGAAGGAGGAGGCA
ACCAATGGTGTGGGAGGGAGGGTAGATGGTGCGGCGGGTGCGGAAACAGC
ATCAACAGAACGCGGGATTACCTTTGAAGATTTGGCGCAGCAATGTGCGG
ATAAGATGATTTCTCGAAGCCACGGGAACCTTCGACAGCTGTTTGATGAG
CTTTTGGACCACCGTCTGCTCAAGAGCAAGGGCATGGGCACCAAGACCCG
CTACTGGATACCGCGTTCCACGGCAGAGCTCAAGATGATTGTCAATTATC
GCGAAAAGTAA

Coding sequence (CDS) from alignment at scaffold_1:354916..356226+

>mRNA_1347 ID=mRNA_1347|Name=jgi.p|Nanoce1779_2|522296|organism=Nannochloropsis oceanica|type=CDS|length=2166bp|location=Sequence derived from alignment at scaffold_1:354916..356226+ (Nannochloropsis oceanica)
ATGGCGTTACTAAATCAAGTAAGAAGGCTGGATGTACCCACTATTCAGGA
GGTGCGTTCAATCGTTTGTTCGCTTGTGCCTTCCCATGCGGATGAAAGGA
AGAAGTTGGAGGATCGGTATGTTGCCACATTTCCTGCGTGGGTGGATGAT
TTGCTGGCAGGTTTCAATCTACTTCTTTATGGGGTAGGTTCTAAGAGGAC
AATTTTGGAAAGATTTGCCGAATACCTGAGGAAAGAGGGAGCGGTGGTGG
TTGTGGACGGGTTGGACCCGAGGGCGGGGAAAGCGAGCCGATTGTTGGAG
GTAGCTACAGAAATGGGGCATGGACCCGCGGCAGTACGATCTTGTACCTT
GCGCTCGGCGCAGCAGCAGCAGCAGGGGGATCCAGACGTGCCGTTGTTTT
TTGTGATACATAGTTTGGATTGTCGAAATATGTGGCAGCATAAGGGGGGG
CATAGCATGCTGGAAGCCTTAATTGAGCTGGTCAATCGTCCAGGCGTGCA
TTTGGTGACATCGGTCGATCATTTAAATGCGCCATTGCTCTTCTCTGCGC
AGCATCTTGAGGCAATGAGCTGGGTATGGCATGATGTCACGACTCTAGCA
CCGTATGTGCCTGAACTAGCCGCCCATTCCAGCGAGAAACACGGGGGCCA
ATCGTACCTGCCGGCAGGGGAAGGACTCAAGTACCTGTTGCAATGCGTGA
CGAAGCGGCATTTGGAACTGCTACAATTCCTCGCTGTCCGTCAATTAGAG
GAGGAGGTGAAGGAGGCCAATCGTCGCGTGGAGACGGCGGCGGCCAACAA
GCGCCGGCGGAAGGAGGAGGCAACCAATGGTGTGGGAGGGAGGGTAGATG
GTGCGGCGGGTGCGGAAACAGCATCAACAGAACGCGGGATTACCTTTGAA
GATTTGGCGCAGCAATGTGCGGATAAGATGATTTCTCGAAGCCACGGGAA
CCTTCGACAGCTGTTTGATGAGCTTTTGGACCACCGTCTGCTCAAGAGCA
AGGGCATGGGCACCAAGACCCGCTACTGGATACCGCGTTCCACGGCAGAG
CTCAAGATGATTGTCAATTATCGCGAAAAGTAAATGGCGTTACTAAATCA
AGTAAGAAGGCTGGATGTACCCACTATTCAGGAGGTGCGTTCAATCGTTT
GTTCGCTTGTGCCTTCCCATGCGGATGAAAGGAAGAAGTTGGAGGATCGG
TATGTTGCCACATTTCCTGCGTGGGTGGATGATTTGCTGGCAGGTTTCAA
TCTACTTCTTTATGGGGTAGGTTCTAAGAGGACAATTTTGGAAAGATTTG
CCGAATACCTGAGGAAAGAGGGAGCGGTGGTGGTTGTGGACGGGTTGGAC
CCGAGGGCGGGGAAAGCGAGCCGATTGTTGGAGGTAGCTACAGAAATGGG
GCATGGACCCGCGGCAGTACGATCTTGTACCTTGCGCTCGGCGCAGCAGC
AGCAGCAGGGGGATCCAGACGTGCCGTTGTTTTTTGTGATACATAGTTTG
GATTGTCGAAATATGTGGCAGCATAAGGGGGGGCATAGCATGCTGGAAGC
CTTAATTGAGCTGGTCAATCGTCCAGGCGTGCATTTGGTGACATCGGTCG
ATCATTTAAATGCGCCATTGCTCTTCTCTGCGCAGCATCTTGAGGCAATG
AGCTGGGTATGGCATGATGTCACGACTCTAGCACCGTATGTGCCTGAACT
AGCCGCCCATTCCAGCGAGAAACACGGGGGCCAATCGTACCTGCCGGCAG
GGGAAGGACTCAAGTACCTGTTGCAATGCGTGACGAAGCGGCATTTGGAA
CTGCTACAATTCCTCGCTGTCCGTCAATTAGAGGAGGAGGTGAAGGAGGC
CAATCGTCGCGTGGAGACGGCGGCGGCCAACAAGCGCCGGCGGAAGGAGG
AGGCAACCAATGGTGTGGGAGGGAGGGTAGATGGTGCGGCGGGTGCGGAA
ACAGCATCAACAGAACGCGGGATTACCTTTGAAGATTTGGCGCAGCAATG
TGCGGATAAGATGATTTCTCGAAGCCACGGGAACCTTCGACAGCTGTTTG
ATGAGCTTTTGGACCACCGTCTGCTCAAGAGCAAGGGCATGGGCACCAAG
ACCCGCTACTGGATACCGCGTTCCACGGCAGAGCTCAAGATGATTGTCAA
TTATCGCGAAAAGTAA

Synonyms

Publications