jgi.p|Nanoce1779_2|571835, mRNA_1346 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571835
Unique NamemRNA_1346
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2188
Alignment locationscaffold_1:353190..355377 -

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Properties
Property NameValue
TranscriptId571921
TrackFilteredModels2
ProteinId571835
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:353190..355377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571835gene_1346Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571835mRNA_1346-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1346CDS_1346Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1346 ID=mRNA_1346|Name=jgi.p|Nanoce1779_2|571835|organism=Nannochloropsis oceanica|type=mRNA|length=2188bp
CAAGGACGAGAACGACAAAGACCCCGCCACAGATCCCTTCTCTCCCTCAG
CCCCCGTCCCCCCTACCGCCGCTGTTGCCCACAACGCCTCCACGCCCGCC
CACCCTCCTGCTGTTGCCTCATCCACTGCAGTCACGGGTCCATGCCCCAT
TTCTGTAGCTACCTCCAACAATCGGCTCGCTTTCCCCGCCCTCGGGTCCA
ACCCGTCCACAACCACCACCGCTCCCTCTTTCCTCAGGTATTCGGCAAAT
CTTTCCAAAATTGTCCTCTTAGAACCTACCCCATAAAGAAGTAGATTGAA
ACCTGCCAGCAAATCATCCACCCACGCAGGAAATGTGGCAACATACCGAT
CCTCCAACTTCTTCCTTTCATCCGCATGGGAAGGCACAAGCGAACAAACG
ATTGAACGCACCTCCTGAATAGTGGGTACATCCAGCCTTCTTACTTGATT
TAGTAACGCCATTGGCGGTTCTAGGCCAATCACACCCCTGCTTTCCCCCC
CCGGAAGCTGCTTCTTGAAAAATCGTTCCGATCCTAGACAGGTCTGCGCG
AACGCAGCACCTTCTGAAGCGGAGGCTGCAGCAGCAGCGGCGGCAGGGGT
AGGTCGTTTGCGTTTGGCGACGATGCGGGTGCGGACGGAAGCTGGGAGAG
GAGGAGAAGGAGGGGTTTTGTGTCTTGCAGGCGCCGGAGGAGGGTGGGCT
GCAGCTGGGGTCTTCTCCTTAACCTTGCCTACGGCCTTGCTCTTGGCAGC
GGCAGCAGCTTCCTGGTGGCAGACGAGATGCAGTGCCACTTTCTCATCCT
GTTCTTCTTTTCCTTCAGCCCCTTCATTCTCCTCCTCTTTCTCCAGCTCT
TCTTTCTCCACAACTACCAGTTGCGGCGGCGGTGGTGGCATCTTTCTCTT
CATCGCCCCTACGATCTTTTTATAAAACGGCCCTGTCCCTAGCGCATGCA
AATGGTCCAAAATTAAATCACGCCTCTCCTTCACCTCCTCATCGGGCACC
TCTAACACCTCCCCTTGCCCTTGTCCCTCCGCTGCCACGTCATCCTTGTT
GCTCTTCTTTTGTGGGTGCGTCCGCGGGTCGAGCAACCACTTCAGGAACG
CCAACATGGTATCAAAAAACACAGCTTCGGCCGCCGTCCGCCCGTACTTG
AAGAAGAACTTCTGCCGTTGTCCTATCCGACGATCGGCCTGGTTCAAAAC
GCGGTAGAGCTGGCTCCAGGCATTCGAGACGGTAGTGAAATGAACTTGAA
GTTCTTCGTTCGTCGCCACCTCTTCCAAGGCCAACCCCAGGCTGCTTGGG
GTGTGCTCGGACAGGAAGTCGGCTTCGTATTTCGCGGGGTCAAAAGCGGG
AGGAGATGACCGGGAAGCACGATCTAGTTGTTGCTTCTGTTGGGGCTGCT
GCTGCTGCTTCGTGGTCGTGACTACCTGTGCTTTAGTAGATGCCTTCTTC
GTCGGCAGCGGCGGCGGTGGTGGCGGTAGCGTTGCCACGGCCGCTTCCTT
TTTGCGAGCAGCAGTGGGAGCAGAAGCAGAAGCAGGTGCAGTCTTTGGCT
TGGGTTGGGACGCGGCGGGCCGTCGGAATCTTCGTGTAGAGGCGGACATA
GCTGCTGCTGCTCCTGACTTTGGTGCTCCCGTCGTCATTGGAGACCGGCC
TGCTGCGGGAGCAGATTTTTGTAGTGACGGCGGGGGAAACTTGAGTTGTA
CGGCAGCATGCGTCATATCATTGCTGCCAGGCTCGTAGAAGAAGGCCAGA
AAGTCACGAAAGAGCTCCAAATGCCCTTGCATGTATTCATACAGACCCCG
GAGGTCTAGCGGCTTGCTACTGCCGCCACTGCTCCCCGCGCCCCTGTCCT
CCTCGCGCGGCACGAGCTTCCCGTGCAACTCCCTCCAGCCTTGGTGGGCC
AAGAGCCATAGGCGCAGGTTGGCCAGCTCGCCCCGCACCCGATTTCGCAG
AGCATCCGCTTCTCCGGGCGTTATGGGGGATGGTTGCTGCTTTTCTTCTG
CCTGCTCCTCCTCCTCCAGTGGCTGCCGGGACGGTGGGTCATTTTCACTG
ACATCGTCATAGTCGTCGTCTTCCCACATCTATCGGGTGCGTGGGTAGGT
GAGAGGCTGGGTGGTGGTGTGTTGGAAGCTGTTGCTCGTGATGCTCGCCC
GTTTTTTGTGTTCCTCGTTCGCCTGTCGGCGATGCTGT
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protein sequence of jgi.p|Nanoce1779_2|571835

>mRNA_1346-protein ID=mRNA_1346-protein|Name=jgi.p|Nanoce1779_2|571835|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MRVRTEAGRGGEGGVLCLAGAGGGWAAAGVFSLTLPTALLLAAAAASWWQ
TRCSATFSSCSSFPSAPSFSSSFSSSSFSTTTSCGGGGGIFLFIAPTIFL
*
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mRNA from alignment at scaffold_1:353190..355377-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1346 ID=mRNA_1346|Name=jgi.p|Nanoce1779_2|571835|organism=Nannochloropsis oceanica|type=mRNA|length=2188bp|location=Sequence derived from alignment at scaffold_1:353190..355377- (Nannochloropsis oceanica)
CAAGGACGAGAACGACAAAGACCCCGCCACAGATCCCTTCTCTCCCTCAG
CCCCCGTCCCCCCTACCGCCGCTGTTGCCCACAACGCCTCCACGCCCGCC
CACCCTCCTGCTGTTGCCTCATCCACTGCAGTCACGGGTCCATGCCCCAT
TTCTGTAGCTACCTCCAACAATCGGCTCGCTTTCCCCGCCCTCGGGTCCA
ACCCGTCCACAACCACCACCGCTCCCTCTTTCCTCAGGTATTCGGCAAAT
CTTTCCAAAATTGTCCTCTTAGAACCTACCCCATAAAGAAGTAGATTGAA
ACCTGCCAGCAAATCATCCACCCACGCAGGAAATGTGGCAACATACCGAT
CCTCCAACTTCTTCCTTTCATCCGCATGGGAAGGCACAAGCGAACAAACG
ATTGAACGCACCTCCTGAATAGTGGGTACATCCAGCCTTCTTACTTGATT
TAGTAACGCCATTGGCGGTTCTAGGCCAATCACACCCCTGCTTTCCCCCC
CCGGAAGCTGCTTCTTGAAAAATCGTTCCGATCCTAGACAGGTCTGCGCG
AACGCAGCACCTTCTGAAGCGGAGGCTGCAGCAGCAGCGGCGGCAGGGGT
AGGTCGTTTGCGTTTGGCGACGATGCGGGTGCGGACGGAAGCTGGGAGAG
GAGGAGAAGGAGGGGTTTTGTGTCTTGCAGGCGCCGGAGGAGGGTGGGCT
GCAGCTGGGGTCTTCTCCTTAACCTTGCCTACGGCCTTGCTCTTGGCAGC
GGCAGCAGCTTCCTGGTGGCAGACGAGATGCAGTGCCACTTTCTCATCCT
GTTCTTCTTTTCCTTCAGCCCCTTCATTCTCCTCCTCTTTCTCCAGCTCT
TCTTTCTCCACAACTACCAGTTGCGGCGGCGGTGGTGGCATCTTTCTCTT
CATCGCCCCTACGATCTTTTTATAAAACGGCCCTGTCCCTAGCGCATGCA
AATGGTCCAAAATTAAATCACGCCTCTCCTTCACCTCCTCATCGGGCACC
TCTAACACCTCCCCTTGCCCTTGTCCCTCCGCTGCCACGTCATCCTTGTT
GCTCTTCTTTTGTGGGTGCGTCCGCGGGTCGAGCAACCACTTCAGGAACG
CCAACATGGTATCAAAAAACACAGCTTCGGCCGCCGTCCGCCCGTACTTG
AAGAAGAACTTCTGCCGTTGTCCTATCCGACGATCGGCCTGGTTCAAAAC
GCGGTAGAGCTGGCTCCAGGCATTCGAGACGGTAGTGAAATGAACTTGAA
GTTCTTCGTTCGTCGCCACCTCTTCCAAGGCCAACCCCAGGCTGCTTGGG
GTGTGCTCGGACAGGAAGTCGGCTTCGTATTTCGCGGGGTCAAAAGCGGG
AGGAGATGACCGGGAAGCACGATCTAGTTGTTGCTTCTGTTGGGGCTGCT
GCTGCTGCTTCGTGGTCGTGACTACCTGTGCTTTAGTAGATGCCTTCTTC
GTCGGCAGCGGCGGCGGTGGTGGCGGTAGCGTTGCCACGGCCGCTTCCTT
TTTGCGAGCAGCAGTGGGAGCAGAAGCAGAAGCAGGTGCAGTCTTTGGCT
TGGGTTGGGACGCGGCGGGCCGTCGGAATCTTCGTGTAGAGGCGGACATA
GCTGCTGCTGCTCCTGACTTTGGTGCTCCCGTCGTCATTGGAGACCGGCC
TGCTGCGGGAGCAGATTTTTGTAGTGACGGCGGGGGAAACTTGAGTTGTA
CGGCAGCATGCGTCATATCATTGCTGCCAGGCTCGTAGAAGAAGGCCAGA
AAGTCACGAAAGAGCTCCAAATGCCCTTGCATGTATTCATACAGACCCCG
GAGGTCTAGCGGCTTGCTACTGCCGCCACTGCTCCCCGCGCCCCTGTCCT
CCTCGCGCGGCACGAGCTTCCCGTGCAACTCCCTCCAGCCTTGGTGGGCC
AAGAGCCATAGGCGCAGGTTGGCCAGCTCGCCCCGCACCCGATTTCGCAG
AGCATCCGCTTCTCCGGGCGTTATGGGGGATGGTTGCTGCTTTTCTTCTG
CCTGCTCCTCCTCCTCCAGTGGCTGCCGGGACGGTGGGTCATTTTCACTG
ACATCGTCATAGTCGTCGTCTTCCCACATCTATCGGGTGCGTGGGTAGGT
GAGAGGCTGGGTGGTGGTGTGTTGGAAGCTGTTGCTCGTGATGCTCGCCC
GTTTTTTGTGTTCCTCGTTCGCCTGTCGGCGATGCTGT
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Coding sequence (CDS) from alignment at scaffold_1:353190..355377-

>mRNA_1346 ID=mRNA_1346|Name=jgi.p|Nanoce1779_2|571835|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_1:353190..355377- (Nannochloropsis oceanica)
ATGCGGGTGCGGACGGAAGCTGGGAGAGGAGGAGAAGGAGGGGTTTTGTG
TCTTGCAGGCGCCGGAGGAGGGTGGGCTGCAGCTGGGGTCTTCTCCTTAA
CCTTGCCTACGGCCTTGCTCTTGGCAGCGGCAGCAGCTTCCTGGTGGCAG
ACGAGATGCAGTGCCACTTTCTCATCCTGTTCTTCTTTTCCTTCAGCCCC
TTCATTCTCCTCCTCTTTCTCCAGCTCTTCTTTCTCCACAACTACCAGTT
GCGGCGGCGGTGGTGGCATCTTTCTCTTCATCGCCCCTACGATCTTTTTA
TAA
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Synonyms
Publications