jgi.p|Nanoce1779_2|571831, mRNA_1345 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571831
Unique Name	mRNA_1345
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1256
Alignment location	scaffold_1:351266..353134 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571917
Track	FilteredModels2
ProteinId	571831

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:351266..353134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571831	gene_1345	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571831	mRNA_1345-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1345	CDS_1345	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:351266..353134+
coding sequence from alignment at scaffold_1:351266..353134+

mRNA sequence

>mRNA_1345 ID=mRNA_1345|Name=jgi.p|Nanoce1779_2|571831|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp
CAGCCACAGACACAGGCAGGGGCCCTGCCTTCACCCTCCCTTTCCCAAGC
AACCCTCGCGACTTTCCCAGGCAGCCCTCGCCTCCACTGCAAACACCATG
GCGAAGAAAAAGGTTCTGCTCATGGGCAAGTCCGGCTCAGGCAAAACATC
CATGCGCTCCTTCATCTTTGCGAACTACATGGCGCGGGATACGATGCGAC
TGTCGCCCACTCTGGACGTGGAGCATCACCACGTCCGGTTCTTGGGGAAT
TTGGTCTTAAACTTGTGGGACTGCGGCGGGCAAGACGCGTTTTACGAGTC
ATATTTTGATAGTCAACGCGACTTGATCTTTCGGAGTGTGGAGGTGTTGA
TTTATGTGTTTGATGTGGAGAGCGCGGATACGGAGAAGGACCTGAGCCAT
TTTGTTGGGGTGCTTGAGGCCATTGACCAATACTCCCCCGATGCCAAACT
TTTCGTGCTCATCCACAAAATGGACCTGGTGGCCGAGGACGAACGGGAAG
CCGTTTTTTTAGACAGACAAAAAATTATCTTGGGCCAGGTGACGCCGCAC
TTTAATTTTTCTGTCACGTTTTTCAAGACGTCCATCTGGGACGAGACGCT
TTATAAGGCGTGGTCGAGTATAGTGTACCAGCTTATTCCGAATGTTAAGG
TATTGGAGCACCAGTTGGAGAGCCTGTGTGGGATTTGCGGGGCGGATGAG
ATGGTGCTTTTTGAGAAGGCCACCTTCTTGGTCATCTCCCATGCCACCCA
CACAGCACACACGGACGTGCACCGATTCGAGAAGATCTCCAATATCATCA
AACAGTTTAAGCTCAGCTGCGGCAAGACCCAAGCGCAGTTCCAGGGCATG
GAAGTGGGTAACTCCGCCTTCACGGCCTATATCGACCTTTTTACTAGCAA
TACCTACATCATGGTCATTCTCTCCGACGCCCGCATCCACACCACCACCA
CACAAATCAACGTTAGGGCGGCCCGCACGGCTTTTGAGAATTTTGTGCCT
TAGAGATGAGGTGGGGGGTAGAGGGATGGGAAAAGAGATGTGGCAATGTC
TGTCATTGTACAAAAGTGTAGTACCTATGAAATGAAATCAAATCGCACGT
GTGTAAATCATGTCCATCTTGCTTCTGGCGCACGCCCAACCTCACCACCC
TATGGCGACACCTTGCTTTTGCAACCTTTTGCCTTTCCTCCGGCCCTTTT
TGGGTGACTATAGCCACACTATCCTCGCATCGCGCTCAAATGTGCACCAC
TTCAGC

protein sequence of jgi.p|Nanoce1779_2|571831

>mRNA_1345-protein ID=mRNA_1345-protein|Name=jgi.p|Nanoce1779_2|571831|organism=Nannochloropsis oceanica|type=polypeptide|length=302bp
MAKKKVLLMGKSGSGKTSMRSFIFANYMARDTMRLSPTLDVEHHHVRFLG
NLVLNLWDCGGQDAFYESYFDSQRDLIFRSVEVLIYVFDVESADTEKDLS
HFVGVLEAIDQYSPDAKLFVLIHKMDLVAEDEREAVFLDRQKIILGQVTP
HFNFSVTFFKTSIWDETLYKAWSSIVYQLIPNVKVLEHQLESLCGICGAD
EMVLFEKATFLVISHATHTAHTDVHRFEKISNIIKQFKLSCGKTQAQFQG
MEVGNSAFTAYIDLFTSNTYIMVILSDARIHTTTTQINVRAARTAFENFV
P*

mRNA from alignment at scaffold_1:351266..353134+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1345 ID=mRNA_1345|Name=jgi.p|Nanoce1779_2|571831|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp|location=Sequence derived from alignment at scaffold_1:351266..353134+ (Nannochloropsis oceanica)
CAGCCACAGACACAGGCAGGGGCCCTGCCTTCACCCTCCCTTTCCCAAGC
AACCCTCGCGACTTTCCCAGGCAGCCCTCGCCTCCACTGCAAACACCATG
GCGAAGAAAAAGGTTCTGCTCATGGGCAAGTCCGGCTCAGGCAAAACATC
CATGCGCTCCTTCATCTTTGCGAACTACATGGCGCGGGATACGATGCGAC
TGTCGCCCACTCTGGACGTGGAGCATCACCACGTCCGGTTCTTGGGGAAT
TTGGTCTTAAACTTGTGGGACTGCGGCGGGCAAGACGCGTTTTACGAGTC
ATATTTTGATAGTCAACGCGACTTGATCTTTCGGAGTGTGGAGGTGTTGA
TTTATGTGTTTGATGTGGAGAGCGCGGATACGGAGAAGGACCTGAGCCAT
TTTGTTGGGGTGCTTGAGGTGCGTAGAGCGGGAGAAGGGACGGAAAATAT
TAAGAGCGGTGTATATGTTTATGCACTGTTGGCGTTGGTGCCGTTGAGTT
TTCGAGCAAGTCGACTGGTCTTTTTGGGGTGTTATTGCTATAGGAGAGGA
CATTTTTCTTATTTCTGCTTGAGTACTCATGTGTCGTTGCTCTCTCCCTC
TCTCTCCCTACTTCTTCGCATGTCCCCCCCACATCAGGCCATTGACCAAT
ACTCCCCCGATGCCAAACTTTTCGTGCTCATCCACAAAATGGACCTGGTG
GCCGAGGACGAACGGGAAGCCGTTTTTTTAGACAGACAAAAAATTATCTT
GGGCCAGGTGACGCCGCACTTTAATTTTTCTGTCACGTTTTTCAAGACGT
CCATCTGGGACGAGACGCTTTATAAGGCGTGGTCGAGTATAGTGTACCAG
CTTATTCCGAATGTTAAGGTATTGGAGCACCAGTTGGAGAGCCTGTGTGG
GATTTGCGGGGCGGATGAGGTAGGGAGGAGGGAGGAAGATAGGGAGGGAG
GGAGGGAAAGCGGGATGGAAGGGAGCAGTGGGAGATACGCTATGGGCCAC
GTCTTACAGCGCATGATGCACGGGTTTGACTTCACTGTGTATATATTTCC
GATATACGGACTACCACTGGTCTCCCTTCCTCCCTCCTTCCCTCCTTAGA
TGGTGCTTTTTGAGAAGGCCACCTTCTTGGTCATCTCCCATGCCACCCAC
ACAGCACACACGGACGTGCACCGATTCGAGAAGATCTCCAATATCATCAA
ACAGTTTAAGCTCAGGTACGACCGGCGGCGGTGGAAGAGAGGAGGGGTAG
GGCGGCAAAACAATAAGAGGCTTATATGCGGAAACGGGGCACTTAAACGT
TTTCGTTCTTATCCCGTGTAACGACCTCTTTACTTTTGGTCACAAGCCAT
CTCTTCTGTCCACAGCACCTTTTCTATTTTCCTTTCCTTCACACTCTCCC
TTCATATTCATGACTCGGCTTTAACACAGCTGCGGCAAGACCCAAGCGCA
GTTCCAGGGCATGGAAGTGGGTAACTCCGCCTTCACGGCCTATATCGACC
TTTTTACTAGCAATACCTACATCATGGTCATTCTCTCCGACGCCCGCATC
CACACCACCACCACACAAATCAACGTTAGGGCGGCCCGCACGGCTTTTGA
GAATTTTGTGCCTTAGAGATGAGGTGGGGGGTAGAGGGATGGGAAAAGAG
ATGTGGCAATGTCTGTCATTGTACAAAAGTGTAGTACCTATGAAATGAAA
TCAAATCGCACGTGTGTAAATCATGTCCATCTTGCTTCTGGCGCACGCCC
AACCTCACCACCCTATGGCGACACCTTGCTTTTGCAACCTTTTGCCTTTC
CTCCGGCCCTTTTTGGGTGACTATAGCCACACTATCCTCGCATCGCGCTC
AAATGTGCACCACTTCAGC

Coding sequence (CDS) from alignment at scaffold_1:351266..353134+

>mRNA_1345 ID=mRNA_1345|Name=jgi.p|Nanoce1779_2|571831|organism=Nannochloropsis oceanica|type=CDS|length=3624bp|location=Sequence derived from alignment at scaffold_1:351266..353134+ (Nannochloropsis oceanica)
ATGGCGAAGAAAAAGGTTCTGCTCATGGGCAAGTCCGGCTCAGGCAAAAC
ATCCATGCGCTCCTTCATCTTTGCGAACTACATGGCGCGGGATACGATGC
GACTGTCGCCCACTCTGGACGTGGAGCATCACCACGTCCGGTTCTTGGGG
AATTTGGTCTTAAACTTGTGGGACTGCGGCGGGCAAGACGCGTTTTACGA
GTCATATTTTGATAGTCAACGCGACTTGATCTTTCGGAGTGTGGAGGTGT
TGATTTATGTGTTTGATGTGGAGAGCGCGGATACGGAGAAGGACCTGAGC
CATTTTGTTGGGGTGCTTGAGGCCATTGACCAATACTCCCCCGATGCCAA
ACTTTTCGTGCTCATCCACAAAATGGACCTGGTGGCCGAGGACGAACGGG
AAGCCGTTTTTTTAGACAGACAAAAAATTATCTTGGGCCAGGTGACGCCG
CACTTTAATTTTTCTGTCACGTTTTTCAAGACGTCCATCTGGGACGAGAC
GCTTTATAAGGCGTGGTCGAGTATAGTGTACCAGCTTATTCCGAATGTTA
AGGTATTGGAGCACCAGTTGGAGAGCCTGTGTGGGATTTGCGGGGCGGAT
GAGATGGTGCTTTTTGAGAAGGCCACCTTCTTGGTCATCTCCCATGCCAC
CCACACAGCACACACGGACGTGCACCGATTCGAGAAGATCTCCAATATCA
TCAAACAGTTTAAGCTCAGCTGCGGCAAGACCCAAGCGCAGTTCCAGGGC
ATGGAAGTGGGTAACTCCGCCTTCACGGCCTATATCGACCTTTTTACTAG
CAATACCTACATCATGGTCATTCTCTCCGACGCCCGCATCCACACCACCA
CCACACAAATCAACGTTAGGGCGGCCCGCACGGCTTTTGAGAATTTTGTG
CCTTAGATGGCGAAGAAAAAGGTTCTGCTCATGGGCAAGTCCGGCTCAGG
CAAAACATCCATGCGCTCCTTCATCTTTGCGAACTACATGGCGCGGGATA
CGATGCGACTGTCGCCCACTCTGGACGTGGAGCATCACCACGTCCGGTTC
TTGGGGAATTTGGTCTTAAACTTGTGGGACTGCGGCGGGCAAGACGCGTT
TTACGAGTCATATTTTGATAGTCAACGCGACTTGATCTTTCGGAGTGTGG
AGGTGTTGATTTATGTGTTTGATGTGGAGAGCGCGGATACGGAGAAGGAC
CTGAGCCATTTTGTTGGGGTGCTTGAGGCCATTGACCAATACTCCCCCGA
TGCCAAACTTTTCGTGCTCATCCACAAAATGGACCTGGTGGCCGAGGACG
AACGGGAAGCCGTTTTTTTAGACAGACAAAAAATTATCTTGGGCCAGGTG
ACGCCGCACTTTAATTTTTCTGTCACGTTTTTCAAGACGTCCATCTGGGA
CGAGACGCTTTATAAGGCGTGGTCGAGTATAGTGTACCAGCTTATTCCGA
ATGTTAAGGTATTGGAGCACCAGTTGGAGAGCCTGTGTGGGATTTGCGGG
GCGGATGAGATGGTGCTTTTTGAGAAGGCCACCTTCTTGGTCATCTCCCA
TGCCACCCACACAGCACACACGGACGTGCACCGATTCGAGAAGATCTCCA
ATATCATCAAACAGTTTAAGCTCAGCTGCGGCAAGACCCAAGCGCAGTTC
CAGGGCATGGAAGTGGGTAACTCCGCCTTCACGGCCTATATCGACCTTTT
TACTAGCAATACCTACATCATGGTCATTCTCTCCGACGCCCGCATCCACA
CCACCACCACACAAATCAACGTTAGGGCGGCCCGCACGGCTTTTGAGAAT
TTTGTGCCTTAGATGGCGAAGAAAAAGGTTCTGCTCATGGGCAAGTCCGG
CTCAGGCAAAACATCCATGCGCTCCTTCATCTTTGCGAACTACATGGCGC
GGGATACGATGCGACTGTCGCCCACTCTGGACGTGGAGCATCACCACGTC
CGGTTCTTGGGGAATTTGGTCTTAAACTTGTGGGACTGCGGCGGGCAAGA
CGCGTTTTACGAGTCATATTTTGATAGTCAACGCGACTTGATCTTTCGGA
GTGTGGAGGTGTTGATTTATGTGTTTGATGTGGAGAGCGCGGATACGGAG
AAGGACCTGAGCCATTTTGTTGGGGTGCTTGAGGCCATTGACCAATACTC
CCCCGATGCCAAACTTTTCGTGCTCATCCACAAAATGGACCTGGTGGCCG
AGGACGAACGGGAAGCCGTTTTTTTAGACAGACAAAAAATTATCTTGGGC
CAGGTGACGCCGCACTTTAATTTTTCTGTCACGTTTTTCAAGACGTCCAT
CTGGGACGAGACGCTTTATAAGGCGTGGTCGAGTATAGTGTACCAGCTTA
TTCCGAATGTTAAGGTATTGGAGCACCAGTTGGAGAGCCTGTGTGGGATT
TGCGGGGCGGATGAGATGGTGCTTTTTGAGAAGGCCACCTTCTTGGTCAT
CTCCCATGCCACCCACACAGCACACACGGACGTGCACCGATTCGAGAAGA
TCTCCAATATCATCAAACAGTTTAAGCTCAGCTGCGGCAAGACCCAAGCG
CAGTTCCAGGGCATGGAAGTGGGTAACTCCGCCTTCACGGCCTATATCGA
CCTTTTTACTAGCAATACCTACATCATGGTCATTCTCTCCGACGCCCGCA
TCCACACCACCACCACACAAATCAACGTTAGGGCGGCCCGCACGGCTTTT
GAGAATTTTGTGCCTTAGATGGCGAAGAAAAAGGTTCTGCTCATGGGCAA
GTCCGGCTCAGGCAAAACATCCATGCGCTCCTTCATCTTTGCGAACTACA
TGGCGCGGGATACGATGCGACTGTCGCCCACTCTGGACGTGGAGCATCAC
CACGTCCGGTTCTTGGGGAATTTGGTCTTAAACTTGTGGGACTGCGGCGG
GCAAGACGCGTTTTACGAGTCATATTTTGATAGTCAACGCGACTTGATCT
TTCGGAGTGTGGAGGTGTTGATTTATGTGTTTGATGTGGAGAGCGCGGAT
ACGGAGAAGGACCTGAGCCATTTTGTTGGGGTGCTTGAGGCCATTGACCA
ATACTCCCCCGATGCCAAACTTTTCGTGCTCATCCACAAAATGGACCTGG
TGGCCGAGGACGAACGGGAAGCCGTTTTTTTAGACAGACAAAAAATTATC
TTGGGCCAGGTGACGCCGCACTTTAATTTTTCTGTCACGTTTTTCAAGAC
GTCCATCTGGGACGAGACGCTTTATAAGGCGTGGTCGAGTATAGTGTACC
AGCTTATTCCGAATGTTAAGGTATTGGAGCACCAGTTGGAGAGCCTGTGT
GGGATTTGCGGGGCGGATGAGATGGTGCTTTTTGAGAAGGCCACCTTCTT
GGTCATCTCCCATGCCACCCACACAGCACACACGGACGTGCACCGATTCG
AGAAGATCTCCAATATCATCAAACAGTTTAAGCTCAGCTGCGGCAAGACC
CAAGCGCAGTTCCAGGGCATGGAAGTGGGTAACTCCGCCTTCACGGCCTA
TATCGACCTTTTTACTAGCAATACCTACATCATGGTCATTCTCTCCGACG
CCCGCATCCACACCACCACCACACAAATCAACGTTAGGGCGGCCCGCACG
GCTTTTGAGAATTTTGTGCCTTAG

Synonyms

Publications