|
Properties
Property Name | Value |
TranscriptId | 549066 |
Track | FilteredModels2 |
ProteinId | 548980 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_1 | supercontig | scaffold_1:346642..347874 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1343 ID=mRNA_1343|Name=jgi.p|Nanoce1779_2|548980|organism=Nannochloropsis oceanica|type=mRNA|length=1191bp ATGGACCGCTTCATCTTCCAAACCGCCGCGATCGAACTTCAACAACCCGG TGGCCCTGACAGCGCCCGTGTCCGCCTCGTCGGGAGCGTGCATATCGCTG ACCCGACATATTTCAAGGCCTTGGAAGAAGCCTGTGCGGATTGCGACGTG GTGCTCTACGAAATGATCACCTCAAAAGGAAACGTTCTGACAGACAACAC GGACGACCGTTGGCCCGCCAAAGAGCAACTTGGCGTCGAGCTCGCCGCTA CTGATGCCCTCCGGAACCTTGCCTCTGCCCACGGCCTCGAGCCACAACTG GACAACATGCATTTTTTCGGGAAAAAAAACTGGTACCTCTCCGATATCAC GCGCGAACAACTCTGTCTCCTCCAACGCGCCCGGGGCGAACGCGCTCTGG ACGACACGACCAAAAGCCGCTTTGCCCACCTCCAGGAAATGGCACAAATT TTTTGGGATGGATTTACGTCCCGTGGGAAAGTCTTGCCGAAATTCCTCTT CATGCGAAACAACCTCTCGGCCCTCCCCTTCCGATTGCTGCGCTTGTGTA TGTGGTTGACTCCAGCACCGGAGCTGCAGCTGCTGTTGTTGGACTGGGCA CGGCAGTACCCTCCAGCAGGTGGATTTAGCAAAATTTTGAGGAGCATGGT GGGGGCTGCGGTGCACGGGGATCTCCTGACTTTAAGGCGCTTAGCGTTCT CGCAGATGCTGACGAGTAGTCAAATGTCCCCGGCCCCGGAGGTGTTGGTC TTGGAAAGAAACAGCAAGGTGGTGCTTGATGTGGAGAAGGCATTAAAAAG TGGCGCCAAGAAGGTGGCTGTATTGTATGGGGGTCTGCACATGAAAGACA TGGAGGCCAAATTACGCCGACATCTAAATTTTCAGCGTGTGGCGGTGATG GAGGGGGAGGTGGGGAGGGAGCGTGGAGCGCAATGGCATACGGCCTGGAC GATGCCTGCCTATACAGCGCAGAAGCAGGTGTTGGTTGCGTTTTTGTGTA TTGCTTTGCCATTGTTGCACTTGAGTGTTGGAGGGTTGGATTGGAGTGCG ACGTTTGGGGGGCTTGCAAAAGATAGTCCGGCGCTTGGCTGGCAGGAGGT GGTGTTGTACTTGTTGAGGCATATGTACATTTATTACGGGTTGTCGAGGT GGGTGGTGGAATGGGAGAAGCAGTTGTTCGAGATGCGGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|548980 >mRNA_1343-protein ID=mRNA_1343-protein|Name=jgi.p|Nanoce1779_2|548980|organism=Nannochloropsis oceanica|type=polypeptide|length=397bp MDRFIFQTAAIELQQPGGPDSARVRLVGSVHIADPTYFKALEEACADCDV VLYEMITSKGNVLTDNTDDRWPAKEQLGVELAATDALRNLASAHGLEPQL DNMHFFGKKNWYLSDITREQLCLLQRARGERALDDTTKSRFAHLQEMAQI FWDGFTSRGKVLPKFLFMRNNLSALPFRLLRLCMWLTPAPELQLLLLDWA RQYPPAGGFSKILRSMVGAAVHGDLLTLRRLAFSQMLTSSQMSPAPEVLV LERNSKVVLDVEKALKSGAKKVAVLYGGLHMKDMEAKLRRHLNFQRVAVM EGEVGRERGAQWHTAWTMPAYTAQKQVLVAFLCIALPLLHLSVGGLDWSA TFGGLAKDSPALGWQEVVLYLLRHMYIYYGLSRWVVEWEKQLFEMR* back to topmRNA from alignment at scaffold_1:346642..347874- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1343 ID=mRNA_1343|Name=jgi.p|Nanoce1779_2|548980|organism=Nannochloropsis oceanica|type=mRNA|length=1233bp|location=Sequence derived from alignment at scaffold_1:346642..347874- (Nannochloropsis oceanica) ATGGACCGCTTCATCTTCCAAACCGCCGCGATCGAACTTCAACAACCCGG
TGGCCCTGACAGCGCCCGTGTCCGCCTCGTCGGGAGCGTGCATATCGCTG
ACCCGACATATTTCAAGGCCTTGGAAGAAGCCTGTGCGGATTGCGACGTG
GTGCTCTACGAAATGATCACCTCAAAAGGAAACGTTCTGACAGACAACAC
GGACGACCGTTGGCCCGCCAAAGAGCAACTTGGCGTCGAGCTCGCCGCTA
CTGATGCCCTCCGGAACCTTGCCTCTGCCCACGGCCTCGAGCCACAACTG
GACAACATGCATTTTTTCGGGAAAAAAAACTGGTACCTCTCCGATATCAC
GCGCGAACAACTCTGTCTCCTCCAACGCGCCCGGGGCGAACGCGCTCTGG
ACGACACGACCAAAAGCCGCTTTGCCCACCTCCAGGAAATGGCACAAATT
TTTTGGGATGGATTTACGTCCCGTGGGAAAGTCTTGCCGAAATTCCTCTT
CATGCGAAACAACCTCTCGGCCCTCCCCTTCCGATTGCTGCGCTTGTGTA
TGTGGTTGACTCCAGCACCGGAGCTGCAGCTGCTGTTGTTGGACTGGGCA
CGGCAGTACCCTCCAGCAGGTGGATTTAGCAAAATTTTGAGGAGCATGGT
GGGGGCTGCGGTGCACGGGGATCTCCTGACTTTAAGGCGCTTAGCGTTCT
CGCAGATGCTGACGAGTAGTCAAATGTCCCCGGCCCCGGAGGTGTTGGTC
TTGGAAAGAAACAGCAAGGTGGTGCTTGATGTGGAGAAGGCATTAAAAAG
TGGCGCCAAGAAGGTGGCTGTATTGTATGGGGGTCTGCACATGAAAGACA
TGGAGGCCAAATTACGCCGACATCTAAATTTTCAGCGTGTGGCGGTGATG
GAGGGGGAGGTGGGGAGGGAGCGTGGAGCGCAATGGCATACGGCCTGGAC
GATGCCTGCCTATACAGCGCAGAAGCAGGTGTTGGTTGCGTTTTTGTGTA
TTGCTTTGCCATTGTTGCACTTGAGTGTTGGAGGGTTGGATTGGAGTGCG
ACGTTTGGGGGGCTTGCAAAAGATGTGTCGCAGCAGGTAGTGTCTGAAGG
AGGGGGGGCAGTGGAGAGTCCGGCGCTTGGCTGGCAGGAGGTGGTGTTGT
ACTTGTTGAGGCATATGTACATTTATTACGGGTTGTCGAGGTGGGTGGTG
GAATGGGAGAAGCAGTTGTTCGAGATGCGGTAA back to topCoding sequence (CDS) from alignment at scaffold_1:346642..347874- >mRNA_1343 ID=mRNA_1343|Name=jgi.p|Nanoce1779_2|548980|organism=Nannochloropsis oceanica|type=CDS|length=2382bp|location=Sequence derived from alignment at scaffold_1:346642..347874- (Nannochloropsis oceanica) AGTCCGGCGCTTGGCTGGCAGGAGGTGGTGTTGTACTTGTTGAGGCATAT GTACATTTATTACGGGTTGTCGAGGTGGGTGGTGGAATGGGAGAAGCAGT TGTTCGAGATGCGGTAAATGGACCGCTTCATCTTCCAAACCGCCGCGATC GAACTTCAACAACCCGGTGGCCCTGACAGCGCCCGTGTCCGCCTCGTCGG GAGCGTGCATATCGCTGACCCGACATATTTCAAGGCCTTGGAAGAAGCCT GTGCGGATTGCGACGTGGTGCTCTACGAAATGATCACCTCAAAAGGAAAC GTTCTGACAGACAACACGGACGACCGTTGGCCCGCCAAAGAGCAACTTGG CGTCGAGCTCGCCGCTACTGATGCCCTCCGGAACCTTGCCTCTGCCCACG GCCTCGAGCCACAACTGGACAACATGCATTTTTTCGGGAAAAAAAACTGG TACCTCTCCGATATCACGCGCGAACAACTCTGTCTCCTCCAACGCGCCCG GGGCGAACGCGCTCTGGACGACACGACCAAAAGCCGCTTTGCCCACCTCC AGGAAATGGCACAAATTTTTTGGGATGGATTTACGTCCCGTGGGAAAGTC TTGCCGAAATTCCTCTTCATGCGAAACAACCTCTCGGCCCTCCCCTTCCG ATTGCTGCGCTTGTGTATGTGGTTGACTCCAGCACCGGAGCTGCAGCTGC TGTTGTTGGACTGGGCACGGCAGTACCCTCCAGCAGGTGGATTTAGCAAA ATTTTGAGGAGCATGGTGGGGGCTGCGGTGCACGGGGATCTCCTGACTTT AAGGCGCTTAGCGTTCTCGCAGATGCTGACGAGTAGTCAAATGTCCCCGG CCCCGGAGGTGTTGGTCTTGGAAAGAAACAGCAAGGTGGTGCTTGATGTG GAGAAGGCATTAAAAAGTGGCGCCAAGAAGGTGGCTGTATTGTATGGGGG TCTGCACATGAAAGACATGGAGGCCAAATTACGCCGACATCTAAATTTTC AGCGTGTGGCGGTGATGGAGGGGGAGGTGGGGAGGGAGCGTGGAGCGCAA TGGCATACGGCCTGGACGATGCCTGCCTATACAGCGCAGAAGCAGGTGTT GGTTGCGTTTTTGTGTATTGCTTTGCCATTGTTGCACTTGAGTGTTGGAG GGTTGGATTGGAGTGCGACGTTTGGGGGGCTTGCAAAAGATAGTCCGGCG CTTGGCTGGCAGGAGGTGGTGTTGTACTTGTTGAGGCATATGTACATTTA TTACGGGTTGTCGAGGTGGGTGGTGGAATGGGAGAAGCAGTTGTTCGAGA TGCGGTAAATGGACCGCTTCATCTTCCAAACCGCCGCGATCGAACTTCAA CAACCCGGTGGCCCTGACAGCGCCCGTGTCCGCCTCGTCGGGAGCGTGCA TATCGCTGACCCGACATATTTCAAGGCCTTGGAAGAAGCCTGTGCGGATT GCGACGTGGTGCTCTACGAAATGATCACCTCAAAAGGAAACGTTCTGACA GACAACACGGACGACCGTTGGCCCGCCAAAGAGCAACTTGGCGTCGAGCT CGCCGCTACTGATGCCCTCCGGAACCTTGCCTCTGCCCACGGCCTCGAGC CACAACTGGACAACATGCATTTTTTCGGGAAAAAAAACTGGTACCTCTCC GATATCACGCGCGAACAACTCTGTCTCCTCCAACGCGCCCGGGGCGAACG CGCTCTGGACGACACGACCAAAAGCCGCTTTGCCCACCTCCAGGAAATGG CACAAATTTTTTGGGATGGATTTACGTCCCGTGGGAAAGTCTTGCCGAAA TTCCTCTTCATGCGAAACAACCTCTCGGCCCTCCCCTTCCGATTGCTGCG CTTGTGTATGTGGTTGACTCCAGCACCGGAGCTGCAGCTGCTGTTGTTGG ACTGGGCACGGCAGTACCCTCCAGCAGGTGGATTTAGCAAAATTTTGAGG AGCATGGTGGGGGCTGCGGTGCACGGGGATCTCCTGACTTTAAGGCGCTT AGCGTTCTCGCAGATGCTGACGAGTAGTCAAATGTCCCCGGCCCCGGAGG TGTTGGTCTTGGAAAGAAACAGCAAGGTGGTGCTTGATGTGGAGAAGGCA TTAAAAAGTGGCGCCAAGAAGGTGGCTGTATTGTATGGGGGTCTGCACAT GAAAGACATGGAGGCCAAATTACGCCGACATCTAAATTTTCAGCGTGTGG CGGTGATGGAGGGGGAGGTGGGGAGGGAGCGTGGAGCGCAATGGCATACG GCCTGGACGATGCCTGCCTATACAGCGCAGAAGCAGGTGTTGGTTGCGTT TTTGTGTATTGCTTTGCCATTGTTGCACTTGAGTGTTGGAGGGTTGGATT GGAGTGCGACGTTTGGGGGGCTTGCAAAAGAT back to top
|