jgi.p|Nanoce1779_2|576333, mRNA_134 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576333
Unique Name	mRNA_134
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1616
Alignment location	scaffold_3:350548..352197 +

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Properties


Property Name	Value
TranscriptId	576419
Track	FilteredModels2
ProteinId	576333

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:350548..352197 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576333	gene_134	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576333	mRNA_134-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_134	CDS_134	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:350548..352197+
coding sequence from alignment at scaffold_3:350548..352197+

mRNA sequence

>mRNA_134 ID=mRNA_134|Name=jgi.p|Nanoce1779_2|576333|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp
GGCCCATGAAAGGAGATCTGGGCTTGAAAGCAGTAGCAGACGACAGCAGC
GCCGGGAGATGGGCGGTGGGATGAGCGGAGTCAAAACTAAAGGTAGGATG
TCCCTTGGCTGGTCGTGGTGGTAGGGTTCGGTCACGGGTGCTGATTCAGC
CTTTTGATTTATTTAATCAGGGAAACACAGCGACGTACAACGGATCATTC
ATCTCATCTCATCATCCGGCGGAGCCGCGACGACCTCCCCTACCTCGCAA
CTCAACGCATGAAAACCCAAAGCATAGGCGAACATGGCACCCGCTAGCAG
CGGCAATCGCAGCGCGTCGTCCTTATCCCTTCTGCTTGCCACTGCTATCT
TTGCCTCCGCTTCAACTGTTGCTACCATTCTCCTTCTTCCAGCTCTCCGT
CGACGCCGTTCTCCGCCTCCCGGCACTCAGGAAGAGAGTAATGGTGGCTA
TGCCGCCCTGATTGGCAATACCCCACTCGTTGAGCTGCAGAGTCTGTCGA
AAGCTACTGGGTGTCGTATCCTGGCTAAGGCTGAGTACCTGAACCCTGGC
GGTACAAGCAAGGACCGAGTGGCCTTGCGCATGATTCAAGAAGCGGAACG
CGCCGGCTTGCTCAAGCCTGGGGGCACGGTGGTGGAAGGCACGTCCGGGA
GTACTGGTATTGCGTTAGCATCCTTGTGTCGGGCGCGGGGGGCCGCGGAA
AAAGTGCGTTTACTCCAACAATACGGTGCCGAGGTCGAGGTGGTTAAACC
TGCCGGGATCGCCAACCCCAACCATTACTACAACCGTGCCCGGACCCGAG
CACAAGAACTTTCGCAGATGGGAAAAAATGCTATTTTTATGGATCAGTTT
GAAACAATGGCGAATTTTCATACGCATTACCATGGGACAGGCCCGGAATT
ATGGAGGCAGCTGGAGGAGGGGTTTGGATTGAGCCCGGATGCCTTTGTAA
TGTCGGCGGGGACGGGAGGGACGATTGCGGGTGTGAGTAGGTCATGGAAA
GAGATGAGAGGCAAGAAGGTGGTGAAGGTGTATTTGGTGGATCCGCCCGG
GTCGGCGCTGTTTAATAAGGTAAAGTTTGGGGTGTGTTATGCGAGTGAAC
AGAAGGAGAGGGGGGTGAGGAGGCACCGATATGATAGCTTGGCGGAAGGG
ATTGGTCTGGATAGGGTGACGGCGAACTTTCAAGAGGCGAGGGTTGATGA
TGCCTTTCGAGTGACAGATCAGGAGGCTGTCGACATGGCGCATTTTTTAC
TGCAGCGGGAGGGATTGTTTGTAGGGAGTTCAACCGCGATGAATGTGGTG
GGGGCCGTAAGGGCGGCCTGGGAATTGGGGAGGGGGCACACGGTGGTGAC
AGTGTTGTGCGATTCGGGTCAGAGACATTTGACGAGATTTTGGAGTCGGG
AATGGGTGGAGGGGGAGGAGAAGGGAGTGCGATGGCCTGAGAGGCCCTGG
ACGGACTTGAGGTTTTTAAAGAGAGTGGAGACGGAGTAGGAAGGAGAAGG
GGGACGAGGGTGGATGGTAAGAGTGAAAAATAGCGAGTTAGCATGTGTGT
ATACAAATAATATGACGTGCGTTGGATGCATCAAACAAATAAAGGCAAAA
GTAATGACTGCAAGGC

protein sequence of jgi.p|Nanoce1779_2|576333

>mRNA_134-protein ID=mRNA_134-protein|Name=jgi.p|Nanoce1779_2|576333|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MAPASSGNRSASSLSLLLATAIFASASTVATILLLPALRRRRSPPPGTQE
ESNGGYAALIGNTPLVELQSLSKATGCRILAKAEYLNPGGTSKDRVALRM
IQEAERAGLLKPGGTVVEGTSGSTGIALASLCRARGAAEKVRLLQQYGAE
VEVVKPAGIANPNHYYNRARTRAQELSQMGKNAIFMDQFETMANFHTHYH
GTGPELWRQLEEGFGLSPDAFVMSAGTGGTIAGVSRSWKEMRGKKVVKVY
LVDPPGSALFNKVKFGVCYASEQKERGVRRHRYDSLAEGIGLDRVTANFQ
EARVDDAFRVTDQEAVDMAHFLLQREGLFVGSSTAMNVVGAVRAAWELGR
GHTVVTVLCDSGQRHLTRFWSREWVEGEEKGVRWPERPWTDLRFLKRVET
E*

mRNA from alignment at scaffold_3:350548..352197+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_134 ID=mRNA_134|Name=jgi.p|Nanoce1779_2|576333|organism=Nannochloropsis oceanica|type=mRNA|length=1650bp|location=Sequence derived from alignment at scaffold_3:350548..352197+ (Nannochloropsis oceanica)
GGCCCATGAAAGGAGATCTGGGCTTGAAAGCAGTAGCAGACGACAGCAGC
GCCGGGAGATGGGCGGTGGGATGAGCGGAGTCAAAACTAAAGGTAGGATG
TCCCTTGGCTGGTCGTGGTGGTAGGGTTCGGTCACGGGTGCTGATTCAGC
CTTTTGATTTATTTAATCAGGGAAACACAGCGACGTACAACGGATCATTC
ATCTCATCTCATCATCCGGCGGAGCCGCGACGACCTCCCCTACCTCGCAA
CTCAACGCATGAAAACCCAAAGCATAGGCGAACATGGCACCCGCTAGCAG
CGGCAATCGCAGCGCGTCGTCCTTATCCCTTCTGCTTGCCACTGCTATCT
TTGCCTCCGCTTCAACTGTTGCTACCATTCTCCTTCTTCCAGCTCTCCGT
CGACGCCGTTCTCCGCCTCCCGGCACTCAGGAAGAGAGTAATGGTGGCTA
TGCCGCCCTGATTGGCAATACCCCACTCGTTGAGCTGCAGAGTCTGTCGA
AAGCTACTGGGTGTCGTATCCTGGCTAAGGCTGAGTACCTGAACCCTGGC
GGTACAAGCAAGGACCGAGTGGCCTTGCGCATGATTCAAGAAGCGGAACG
CGCCGGCTTGCTCAAGCCTGGGGGCACGGTGGTGGAAGGCACGTCCGGGA
GTACTGGTATTGCGTTAGCATCCTTGTGTCGGGCGCGGGGGGTACCGGTG
CTTGATAGTCATGCCTGACGATCAGGCCGCGGAAAAAGTGCGTTTACTCC
AACAATACGGTGCCGAGGTCGAGGTGGTTAAACCTGCCGGGATCGCCAAC
CCCAACCATTACTACAACCGTGCCCGGACCCGAGCACAAGAACTTTCGCA
GATGGGAAAAAATGCTATTTTTATGGATCAGTTTGAAACAATGGCGAATT
TTCATACGCATTACCATGGGACAGGCCCGGAATTATGGAGGCAGCTGGAG
GAGGGGTTTGGATTGAGCCCGGATGCCTTTGTAATGTCGGCGGGGACGGG
AGGGACGATTGCGGGTGTGAGTAGGTCATGGAAAGAGATGAGAGGCAAGA
AGGTGGTGAAGGTGTATTTGGTGGATCCGCCCGGGTCGGCGCTGTTTAAT
AAGGTAAAGTTTGGGGTGTGTTATGCGAGTGAACAGAAGGAGAGGGGGGT
GAGGAGGCACCGATATGATAGCTTGGCGGAAGGGATTGGTCTGGATAGGG
TGACGGCGAACTTTCAAGAGGCGAGGGTTGATGATGCCTTTCGAGTGACA
GATCAGGAGGCTGTCGACATGGCGCATTTTTTACTGCAGCGGGAGGGATT
GTTTGTAGGGAGTTCAACCGCGATGAATGTGGTGGGGGCCGTAAGGGCGG
CCTGGGAATTGGGGAGGGGGCACACGGTGGTGACAGTGTTGTGCGATTCG
GGTCAGAGACATTTGACGAGATTTTGGAGTCGGGAATGGGTGGAGGGGGA
GGAGAAGGGAGTGCGATGGCCTGAGAGGCCCTGGACGGACTTGAGGTTTT
TAAAGAGAGTGGAGACGGAGTAGGAAGGAGAAGGGGGACGAGGGTGGATG
GTAAGAGTGAAAAATAGCGAGTTAGCATGTGTGTATACAAATAATATGAC
GTGCGTTGGATGCATCAAACAAATAAAGGCAAAAGTAATGACTGCAAGGC

Coding sequence (CDS) from alignment at scaffold_3:350548..352197+

>mRNA_134 ID=mRNA_134|Name=jgi.p|Nanoce1779_2|576333|organism=Nannochloropsis oceanica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_3:350548..352197+ (Nannochloropsis oceanica)
ATGGCACCCGCTAGCAGCGGCAATCGCAGCGCGTCGTCCTTATCCCTTCT
GCTTGCCACTGCTATCTTTGCCTCCGCTTCAACTGTTGCTACCATTCTCC
TTCTTCCAGCTCTCCGTCGACGCCGTTCTCCGCCTCCCGGCACTCAGGAA
GAGAGTAATGGTGGCTATGCCGCCCTGATTGGCAATACCCCACTCGTTGA
GCTGCAGAGTCTGTCGAAAGCTACTGGGTGTCGTATCCTGGCTAAGGCTG
AGTACCTGAACCCTGGCGGTACAAGCAAGGACCGAGTGGCCTTGCGCATG
ATTCAAGAAGCGGAACGCGCCGGCTTGCTCAAGCCTGGGGGCACGGTGGT
GGAAGGCACGTCCGGGAGTACTGGTATTGCGTTAGCATCCTTGTGTCGGG
CGCGGGGGGCCGCGGAAAAAGTGCGTTTACTCCAACAATACGGTGCCGAG
GTCGAGGTGGTTAAACCTGCCGGGATCGCCAACCCCAACCATTACTACAA
CCGTGCCCGGACCCGAGCACAAGAACTTTCGCAGATGGGAAAAAATGCTA
TTTTTATGGATCAGTTTGAAACAATGGCGAATTTTCATACGCATTACCAT
GGGACAGGCCCGGAATTATGGAGGCAGCTGGAGGAGGGGTTTGGATTGAG
CCCGGATGCCTTTGTAATGTCGGCGGGGACGGGAGGGACGATTGCGGGTG
TGAGTAGGTCATGGAAAGAGATGAGAGGCAAGAAGGTGGTGAAGGTGTAT
TTGGTGGATCCGCCCGGGTCGGCGCTGTTTAATAAGGTAAAGTTTGGGGT
GTGTTATGCGAGTGAACAGAAGGAGAGGGGGGTGAGGAGGCACCGATATG
ATAGCTTGGCGGAAGGGATTGGTCTGGATAGGGTGACGGCGAACTTTCAA
GAGGCGAGGGTTGATGATGCCTTTCGAGTGACAGATCAGGAGGCTGTCGA
CATGGCGCATTTTTTACTGCAGCGGGAGGGATTGTTTGTAGGGAGTTCAA
CCGCGATGAATGTGGTGGGGGCCGTAAGGGCGGCCTGGGAATTGGGGAGG
GGGCACACGGTGGTGACAGTGTTGTGCGATTCGGGTCAGAGACATTTGAC
GAGATTTTGGAGTCGGGAATGGGTGGAGGGGGAGGAGAAGGGAGTGCGAT
GGCCTGAGAGGCCCTGGACGGACTTGAGGTTTTTAAAGAGAGTGGAGACG
GAGTAGATGGCACCCGCTAGCAGCGGCAATCGCAGCGCGTCGTCCTTATC
CCTTCTGCTTGCCACTGCTATCTTTGCCTCCGCTTCAACTGTTGCTACCA
TTCTCCTTCTTCCAGCTCTCCGTCGACGCCGTTCTCCGCCTCCCGGCACT
CAGGAAGAGAGTAATGGTGGCTATGCCGCCCTGATTGGCAATACCCCACT
CGTTGAGCTGCAGAGTCTGTCGAAAGCTACTGGGTGTCGTATCCTGGCTA
AGGCTGAGTACCTGAACCCTGGCGGTACAAGCAAGGACCGAGTGGCCTTG
CGCATGATTCAAGAAGCGGAACGCGCCGGCTTGCTCAAGCCTGGGGGCAC
GGTGGTGGAAGGCACGTCCGGGAGTACTGGTATTGCGTTAGCATCCTTGT
GTCGGGCGCGGGGGGCCGCGGAAAAAGTGCGTTTACTCCAACAATACGGT
GCCGAGGTCGAGGTGGTTAAACCTGCCGGGATCGCCAACCCCAACCATTA
CTACAACCGTGCCCGGACCCGAGCACAAGAACTTTCGCAGATGGGAAAAA
ATGCTATTTTTATGGATCAGTTTGAAACAATGGCGAATTTTCATACGCAT
TACCATGGGACAGGCCCGGAATTATGGAGGCAGCTGGAGGAGGGGTTTGG
ATTGAGCCCGGATGCCTTTGTAATGTCGGCGGGGACGGGAGGGACGATTG
CGGGTGTGAGTAGGTCATGGAAAGAGATGAGAGGCAAGAAGGTGGTGAAG
GTGTATTTGGTGGATCCGCCCGGGTCGGCGCTGTTTAATAAGGTAAAGTT
TGGGGTGTGTTATGCGAGTGAACAGAAGGAGAGGGGGGTGAGGAGGCACC
GATATGATAGCTTGGCGGAAGGGATTGGTCTGGATAGGGTGACGGCGAAC
TTTCAAGAGGCGAGGGTTGATGATGCCTTTCGAGTGACAGATCAGGAGGC
TGTCGACATGGCGCATTTTTTACTGCAGCGGGAGGGATTGTTTGTAGGGA
GTTCAACCGCGATGAATGTGGTGGGGGCCGTAAGGGCGGCCTGGGAATTG
GGGAGGGGGCACACGGTGGTGACAGTGTTGTGCGATTCGGGTCAGAGACA
TTTGACGAGATTTTGGAGTCGGGAATGGGTGGAGGGGGAGGAGAAGGGAG
TGCGATGGCCTGAGAGGCCCTGGACGGACTTGAGGTTTTTAAAGAGAGTG
GAGACGGAGTAG

Synonyms

Publications