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Properties
| Property Name | Value |
|---|
| TranscriptId | 571880 |
| Track | FilteredModels2 |
| ProteinId | 571794 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:314706..316889 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1337 ID=mRNA_1337|Name=jgi.p|Nanoce1779_2|571794|organism=Nannochloropsis oceanica|type=mRNA|length=1882bp
GCAAAGCTCGCTTATATAGAAGTCCGTCCAAGCCGCGATCAAGGAGGCGC
GCGTTCAAGTGCCTGTATTGTTGTGGTGGTGGGAGGAGTCATTGGAATTA
TTAGGTCGTGTGAGGGAGAAGCACGGAGTGGGAAACCCCGAGTCGATAGA
ACGATGATCATCATCACACCCCAGCCCGCACTTGCTTTCTGTAACGTCGT
TACATTCCCCCAAGCACAGGTACACCAATGCCGGAATGGCACGTCCCTAA
CGACCACCACACTGTGCAAGGCGAAATGGTACGTGCTTTGGGATGTGGCC
TGAGCAGTACAAGCTTCCTCCTGGCCTCACTCAGGCAGCCCAGAGTAATC
GCTGAAGAGTCTGAGCGAACGCTCCTGCGGTCGTCGTTGTTGGCCACTCT
TCCCACACGAAAATACTGGGTCCATGATGCCTGAGGGCTGCTTTGTCACG
CTGTTGTGGCCCTGATAGGATGGTCCTGACCCAGGAGTGTCTCTTTTGCT
GAACCTTGGTGTCCTTCCCTCCCTCCCTCCGTCCCACCCTCAGGTTGAAA
GTGTCATGACGACCACCAAAGACACATGCACACGGCAGCGTCTAAAGTCA
CCGCCGGTGGGACCTACGGGTGCCGGCAGTCTGATACACGCCCATTCCCC
TCAACTTTATCATGGGCCACAACCACCACCATCCCCGCGGCCCCCATCCC
TATCAATCACCCCTGGCCGGTCTCCCGCCGTCAAATGGAAGATGGCCTTG
TACGCTCGACAGCCATTCCCCGATAACCACGTGCCGGACAGCTTTTTGGA
TAAGCTTGTCACCAACGCTGGCATCTCGCGGCCCGAGCTTCGGTATATTT
TTTTGCGGGCCACAGCCGTCACGCAGCAAATCAGCGTTGTGGTCGTATTC
TTGATGGCCTTCCTCTACTCCTCCGATAACATCCTTCCCCTCCCCCTCCT
CCTCGCCACCGACGCCGGCCTCCTTCTAGGCGGTTACCTCCTGGCAGCCT
GCATCCATCCCCGACGAATGCTACAGCTTCGTACCCTCCTCTCTACGTGC
GGCTGGATCACGTTGTGTGCGGCTTGCTTGCGAGTCATTGCGCCTGTGCT
ACGGACATTGACGGTGTCGTACTCTGACGACACTATCTATGCATTGGCTC
TAGTTCTTTCAGGGTTGCATCTGGTATTTCACGACTATGGTGCTGCATGG
TCTTTATCTTCGTCTTTGTTCTGTTCTTCCTCCTTTTCCTCCCCCGCATC
TTTTACGGTTCGAGCGACAAAGGTTGCTGCAGGCATAGAAGGGAATGAAA
ATGACGACGAGGATGAGGACAAGGACATATCTGACGTCTCTCAAAGCTCA
TGTCAAGCAAAAACCGCAACTGCAGAAGCAGCAGCAGTGGCCATCCTGCT
CACCTCCCCATCTCAGTTCCACGGGACCTTTTCCTTGAATGCCGCGCTGT
TCGCCGCTGTGCTCCTTGCGTCCCGCTTGGAAAGCAACGAGCAGGTCTTT
GGATTTGTCTTTCTAGCCATCGAGCTGTTTGCCTTCTTTCCACTCGCGCG
ACATTTGGCCCACCGACGATCCACGACTCTCCACCTCCTGGTGGCACTTG
GGCTGGTTGTGGCGGCGACGAGCGCTTTGGCTGCCGCGGTGGAGCATCGG
CCGCTGTTGGTAATGTATTTGATTGTGGTGGTTTTTGTGTCGTTGGTGTG
CCCAGTGTGGTTACAACATATCCATCAATATAAATTTACGATCCAGGGTC
CTTGGGATATTGCATCAGTGGAGGGCACCGGGGGAGAAGATTCCTAGGTG
AGCCGAAACTGTGTAAGATGCGGAAAGTGCAGTTTGAAAATAGAGTAAAG
AGATAGAAACAAATGTATATTGTAGGTTTGGG back to topprotein sequence of jgi.p|Nanoce1779_2|571794 >mRNA_1337-protein ID=mRNA_1337-protein|Name=jgi.p|Nanoce1779_2|571794|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MTTTKDTCTRQRLKSPPVGPTGAGSLIHAHSPQLYHGPQPPPSPRPPSLS
ITPGRSPAVKWKMALYARQPFPDNHVPDSFLDKLVTNAGISRPELRYIFL
RATAVTQQISVVVVFLMAFLYSSDNILPLPLLLATDAGLLLGGYLLAACI
HPRRMLQLRTLLSTCGWITLCAACLRVIAPVLRTLTVSYSDDTIYALALV
LSGLHLVFHDYGAAWSLSSSLFCSSSFSSPASFTVRATKVAAGIEGNEND
DEDEDKDISDVSQSSCQAKTATAEAAAVAILLTSPSQFHGTFSLNAALFA
AVLLASRLESNEQVFGFVFLAIELFAFFPLARHLAHRRSTTLHLLVALGL
VVAATSALAAAVEHRPLLVMYLIVVVFVSLVCPVWLQHIHQYKFTIQGPW
DIASVEGTGGEDS* back to topmRNA from alignment at scaffold_1:314706..316889- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1337 ID=mRNA_1337|Name=jgi.p|Nanoce1779_2|571794|organism=Nannochloropsis oceanica|type=mRNA|length=2184bp|location=Sequence derived from alignment at scaffold_1:314706..316889- (Nannochloropsis oceanica)
GCAAAGCTCGCTTATATAGAAGTCCGTCCAAGCCGCGATCAAGGAGGCGC
GCGTTCAAGTGCCTGTATTGTTGTGGTGGTGGGAGGAGTCATTGGAATTA
TTAGGTCGTGTGAGGGAGAAGCACGGAGTGGGAAACCCCGAGTCGATAGA
ACGATGATCATCATCACACCCCAGCCCGCACTTGCTTTCTGTAACGTCGT
TACATTCCCCCAAGCACAGGTACACCAATGCCGGAATGGCACGTCCCTAA
CGACCACCACACTGTGCAAGGCGAAATGGTACGTGCTTTGGGATGTGGCC
TGAGCAGTACAAGCTTCCTCCTGGCCTCACTCAGGCAGCCCAGAGTAATC
GCTGAAGAGTCTGAGCGAACGCTCCTGCGGTCGTCGTTGTTGGCCACTCT
TCCCACACGAAAATACTGGGTCCATGATGCCTGAGGGCTGCTTTGTCACG
CTGTTGTGGCCCTGATAGGATGGTCCTGACCCAGGAGTGTCTCTTTTGCT
GAACCTTGGTGTCCTTCCCTCCCTCCCTCCGTCCCACCCTCAGGTTGAAA
GTGTCATGACGACCACCAAAGACACATGCACACGGCAGCGTCTAAAGTCA
CCGCCGGTGGGACCTACGGGTGCCGGCAGTCTGGTAAGAACGGTGGTTGT
CTATTTTACTGTTGGCCCATCTAGTCTTGTCCTTACCGGCGCGATCAACG
TACCCACAGATACACGCCCATTCCCCTCAACTTTATCATGGGCCACAACC
ACCACCATCCCCGCGGCCCCCATCCCTATCAATCACCCCTGGCCGGTCTC
CCGCCGTCAAATGGAAGATGGCCTTGTACGCTCGACAGCCATTCCCCGAT
AACCACGTGCCGGACAGCTTTTTGGATAAGCTTGTCACCAACGGTATGTC
CCGCGAAATCATGATTCCGCTCGCTCTCTGTGCCACCTTCCCCAATGTCT
CCAGCGCAACGGCGTCTGATTCTATGATCAACCAATCGAAAAAATCACCT
CACTCTCTGCCCTCTATACGCAGCTGGCATCTCGCGGCCCGAGCTTCGGT
ATATTTTTTTGCGGGCCACAGCCGTCACGCAGCAAATCAGCGTTGTGGTC
GTATTCTTGGTAAGTCTCCACATTCCATCCCATCTCATCTCCTTCTTCCA
ATCCTCCCTATTCACAATCTCCTTTTCACTTCCTTTCCGCAATTTTTACA
TCTAGATGGCCTTCCTCTACTCCTCCGATAACATCCTTCCCCTCCCCCTC
CTCCTCGCCACCGACGCCGGCCTCCTTCTAGGCGGTTACCTCCTGGCAGC
CTGCATCCATCCCCGACGAATGCTACAGCTTCGTACCCTCCTCTCTACGT
GCGGCTGGATCACGTTGTGTGCGGCTTGCTTGCGAGTCATTGCGCCTGTG
CTACGGACATTGACGGTGTCGTACTCTGACGACACTATCTATGCATTGGC
TCTAGTTCTTTCAGGGTTGCATCTGGTATTTCACGACTATGGTGCTGCAT
GGTCTTTATCTTCGTCTTTGTTCTGTTCTTCCTCCTTTTCCTCCCCCGCA
TCTTTTACGGTTCGAGCGACAAAGGTTGCTGCAGGCATAGAAGGGAATGA
AAATGACGACGAGGATGAGGACAAGGACATATCTGACGTCTCTCAAAGCT
CATGTCAAGCAAAAACCGCAACTGCAGAAGCAGCAGCAGTGGCCATCCTG
CTCACCTCCCCATCTCAGTTCCACGGGACCTTTTCCTTGAATGCCGCGCT
GTTCGCCGCTGTGCTCCTTGCGTCCCGCTTGGAAAGCAACGAGCAGGTCT
TTGGATTTGTCTTTCTAGCCATCGAGCTGTTTGCCTTCTTTCCACTCGCG
CGACATTTGGCCCACCGACGATCCACGACTCTCCACCTCCTGGTGGCACT
TGGGCTGGTTGTGGCGGCGACGAGCGCTTTGGCTGCCGCGGTGGAGCATC
GGCCGCTGTTGGTAATGTATTTGATTGTGGTGGTTTTTGTGTCGTTGGTG
TGCCCAGTGTGGTTACAACATATCCATCAATATAAATTTACGATCCAGGG
TCCTTGGGATATTGCATCAGTGGAGGGCACCGGGGGAGAAGATTCCTAGG
TGAGCCGAAACTGTGTAAGATGCGGAAAGTGCAGTTTGAAAATAGAGTAA
AGAGATAGAAACAAATGTATATTGTAGGTTTGGG back to topCoding sequence (CDS) from alignment at scaffold_1:314706..316889- >mRNA_1337 ID=mRNA_1337|Name=jgi.p|Nanoce1779_2|571794|organism=Nannochloropsis oceanica|type=CDS|length=4968bp|location=Sequence derived from alignment at scaffold_1:314706..316889- (Nannochloropsis oceanica)
ATGGCCTTCCTCTACTCCTCCGATAACATCCTTCCCCTCCCCCTCCTCCT
CGCCACCGACGCCGGCCTCCTTCTAGGCGGTTACCTCCTGGCAGCCTGCA
TCCATCCCCGACGAATGCTACAGCTTCGTACCCTCCTCTCTACGTGCGGC
TGGATCACGTTGTGTGCGGCTTGCTTGCGAGTCATTGCGCCTGTGCTACG
GACATTGACGGTGTCGTACTCTGACGACACTATCTATGCATTGGCTCTAG
TTCTTTCAGGGTTGCATCTGGTATTTCACGACTATGGTGCTGCATGGTCT
TTATCTTCGTCTTTGTTCTGTTCTTCCTCCTTTTCCTCCCCCGCATCTTT
TACGGTTCGAGCGACAAAGGTTGCTGCAGGCATAGAAGGGAATGAAAATG
ACGACGAGGATGAGGACAAGGACATATCTGACGTCTCTCAAAGCTCATGT
CAAGCAAAAACCGCAACTGCAGAAGCAGCAGCAGTGGCCATCCTGCTCAC
CTCCCCATCTCAGTTCCACGGGACCTTTTCCTTGAATGCCGCGCTGTTCG
CCGCTGTGCTCCTTGCGTCCCGCTTGGAAAGCAACGAGCAGGTCTTTGGA
TTTGTCTTTCTAGCCATCGAGCTGTTTGCCTTCTTTCCACTCGCGCGACA
TTTGGCCCACCGACGATCCACGACTCTCCACCTCCTGGTGGCACTTGGGC
TGGTTGTGGCGGCGACGAGCGCTTTGGCTGCCGCGGTGGAGCATCGGCCG
CTGTTGGTAATGTATTTGATTGTGGTGGTTTTTGTGTCGTTGGTGTGCCC
AGTGTGGTTACAACATATCCATCAATATAAATTTACGATCCAGGGTCCTT
GGGATATTGCATCAGTGGAGGGCACCGGGGGAGAAGATTCCTAGCTGGCA
TCTCGCGGCCCGAGCTTCGGTATATTTTTTTGCGGGCCACAGCCGTCACG
CAGCAAATCAGCGTTGTGGTCGTATTCTTGATACACGCCCATTCCCCTCA
ACTTTATCATGGGCCACAACCACCACCATCCCCGCGGCCCCCATCCCTAT
CAATCACCCCTGGCCGGTCTCCCGCCGTCAAATGGAAGATGGCCTTGTAC
GCTCGACAGCCATTCCCCGATAACCACGTGCCGGACAGCTTTTTGGATAA
GCTTGTCACCAACGATGACGACCACCAAAGACACATGCACACGGCAGCGT
CTAAAGTCACCGCCGGTGGGACCTACGGGTGCCGGCAGTCTGATGGCCTT
CCTCTACTCCTCCGATAACATCCTTCCCCTCCCCCTCCTCCTCGCCACCG
ACGCCGGCCTCCTTCTAGGCGGTTACCTCCTGGCAGCCTGCATCCATCCC
CGACGAATGCTACAGCTTCGTACCCTCCTCTCTACGTGCGGCTGGATCAC
GTTGTGTGCGGCTTGCTTGCGAGTCATTGCGCCTGTGCTACGGACATTGA
CGGTGTCGTACTCTGACGACACTATCTATGCATTGGCTCTAGTTCTTTCA
GGGTTGCATCTGGTATTTCACGACTATGGTGCTGCATGGTCTTTATCTTC
GTCTTTGTTCTGTTCTTCCTCCTTTTCCTCCCCCGCATCTTTTACGGTTC
GAGCGACAAAGGTTGCTGCAGGCATAGAAGGGAATGAAAATGACGACGAG
GATGAGGACAAGGACATATCTGACGTCTCTCAAAGCTCATGTCAAGCAAA
AACCGCAACTGCAGAAGCAGCAGCAGTGGCCATCCTGCTCACCTCCCCAT
CTCAGTTCCACGGGACCTTTTCCTTGAATGCCGCGCTGTTCGCCGCTGTG
CTCCTTGCGTCCCGCTTGGAAAGCAACGAGCAGGTCTTTGGATTTGTCTT
TCTAGCCATCGAGCTGTTTGCCTTCTTTCCACTCGCGCGACATTTGGCCC
ACCGACGATCCACGACTCTCCACCTCCTGGTGGCACTTGGGCTGGTTGTG
GCGGCGACGAGCGCTTTGGCTGCCGCGGTGGAGCATCGGCCGCTGTTGGT
AATGTATTTGATTGTGGTGGTTTTTGTGTCGTTGGTGTGCCCAGTGTGGT
TACAACATATCCATCAATATAAATTTACGATCCAGGGTCCTTGGGATATT
GCATCAGTGGAGGGCACCGGGGGAGAAGATTCCTAGCTGGCATCTCGCGG
CCCGAGCTTCGGTATATTTTTTTGCGGGCCACAGCCGTCACGCAGCAAAT
CAGCGTTGTGGTCGTATTCTTGATACACGCCCATTCCCCTCAACTTTATC
ATGGGCCACAACCACCACCATCCCCGCGGCCCCCATCCCTATCAATCACC
CCTGGCCGGTCTCCCGCCGTCAAATGGAAGATGGCCTTGTACGCTCGACA
GCCATTCCCCGATAACCACGTGCCGGACAGCTTTTTGGATAAGCTTGTCA
CCAACGATGACGACCACCAAAGACACATGCACACGGCAGCGTCTAAAGTC
ACCGCCGGTGGGACCTACGGGTGCCGGCAGTCTGATGGCCTTCCTCTACT
CCTCCGATAACATCCTTCCCCTCCCCCTCCTCCTCGCCACCGACGCCGGC
CTCCTTCTAGGCGGTTACCTCCTGGCAGCCTGCATCCATCCCCGACGAAT
GCTACAGCTTCGTACCCTCCTCTCTACGTGCGGCTGGATCACGTTGTGTG
CGGCTTGCTTGCGAGTCATTGCGCCTGTGCTACGGACATTGACGGTGTCG
TACTCTGACGACACTATCTATGCATTGGCTCTAGTTCTTTCAGGGTTGCA
TCTGGTATTTCACGACTATGGTGCTGCATGGTCTTTATCTTCGTCTTTGT
TCTGTTCTTCCTCCTTTTCCTCCCCCGCATCTTTTACGGTTCGAGCGACA
AAGGTTGCTGCAGGCATAGAAGGGAATGAAAATGACGACGAGGATGAGGA
CAAGGACATATCTGACGTCTCTCAAAGCTCATGTCAAGCAAAAACCGCAA
CTGCAGAAGCAGCAGCAGTGGCCATCCTGCTCACCTCCCCATCTCAGTTC
CACGGGACCTTTTCCTTGAATGCCGCGCTGTTCGCCGCTGTGCTCCTTGC
GTCCCGCTTGGAAAGCAACGAGCAGGTCTTTGGATTTGTCTTTCTAGCCA
TCGAGCTGTTTGCCTTCTTTCCACTCGCGCGACATTTGGCCCACCGACGA
TCCACGACTCTCCACCTCCTGGTGGCACTTGGGCTGGTTGTGGCGGCGAC
GAGCGCTTTGGCTGCCGCGGTGGAGCATCGGCCGCTGTTGGTAATGTATT
TGATTGTGGTGGTTTTTGTGTCGTTGGTGTGCCCAGTGTGGTTACAACAT
ATCCATCAATATAAATTTACGATCCAGGGTCCTTGGGATATTGCATCAGT
GGAGGGCACCGGGGGAGAAGATTCCTAGCTGGCATCTCGCGGCCCGAGCT
TCGGTATATTTTTTTGCGGGCCACAGCCGTCACGCAGCAAATCAGCGTTG
TGGTCGTATTCTTGATACACGCCCATTCCCCTCAACTTTATCATGGGCCA
CAACCACCACCATCCCCGCGGCCCCCATCCCTATCAATCACCCCTGGCCG
GTCTCCCGCCGTCAAATGGAAGATGGCCTTGTACGCTCGACAGCCATTCC
CCGATAACCACGTGCCGGACAGCTTTTTGGATAAGCTTGTCACCAACGAT
GACGACCACCAAAGACACATGCACACGGCAGCGTCTAAAGTCACCGCCGG
TGGGACCTACGGGTGCCGGCAGTCTGATGGCCTTCCTCTACTCCTCCGAT
AACATCCTTCCCCTCCCCCTCCTCCTCGCCACCGACGCCGGCCTCCTTCT
AGGCGGTTACCTCCTGGCAGCCTGCATCCATCCCCGACGAATGCTACAGC
TTCGTACCCTCCTCTCTACGTGCGGCTGGATCACGTTGTGTGCGGCTTGC
TTGCGAGTCATTGCGCCTGTGCTACGGACATTGACGGTGTCGTACTCTGA
CGACACTATCTATGCATTGGCTCTAGTTCTTTCAGGGTTGCATCTGGTAT
TTCACGACTATGGTGCTGCATGGTCTTTATCTTCGTCTTTGTTCTGTTCT
TCCTCCTTTTCCTCCCCCGCATCTTTTACGGTTCGAGCGACAAAGGTTGC
TGCAGGCATAGAAGGGAATGAAAATGACGACGAGGATGAGGACAAGGACA
TATCTGACGTCTCTCAAAGCTCATGTCAAGCAAAAACCGCAACTGCAGAA
GCAGCAGCAGTGGCCATCCTGCTCACCTCCCCATCTCAGTTCCACGGGAC
CTTTTCCTTGAATGCCGCGCTGTTCGCCGCTGTGCTCCTTGCGTCCCGCT
TGGAAAGCAACGAGCAGGTCTTTGGATTTGTCTTTCTAGCCATCGAGCTG
TTTGCCTTCTTTCCACTCGCGCGACATTTGGCCCACCGACGATCCACGAC
TCTCCACCTCCTGGTGGCACTTGGGCTGGTTGTGGCGGCGACGAGCGCTT
TGGCTGCCGCGGTGGAGCATCGGCCGCTGTTGGTAATGTATTTGATTGTG
GTGGTTTTTGTGTCGTTGGTGTGCCCAGTGTGGTTACAACATATCCATCA
ATATAAATTTACGATCCAGGGTCCTTGGGATATTGCATCAGTGGAGGGCA
CCGGGGGAGAAGATTCCTAGCTGGCATCTCGCGGCCCGAGCTTCGGTATA
TTTTTTTGCGGGCCACAGCCGTCACGCAGCAAATCAGCGTTGTGGTCGTA
TTCTTGATACACGCCCATTCCCCTCAACTTTATCATGGGCCACAACCACC
ACCATCCCCGCGGCCCCCATCCCTATCAATCACCCCTGGCCGGTCTCCCG
CCGTCAAATGGAAGATGGCCTTGTACGCTCGACAGCCATTCCCCGATAAC
CACGTGCCGGACAGCTTTTTGGATAAGCTTGTCACCAACGATGACGACCA
CCAAAGACACATGCACACGGCAGCGTCTAAAGTCACCGCCGGTGGGACCT
ACGGGTGCCGGCAGTCTG back to top
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