jgi.p|Nanoce1779_2|571777, mRNA_1335 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571777
Unique NamemRNA_1335
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1727
Alignment locationscaffold_1:305332..307380 -

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Properties
Property NameValue
TranscriptId571863
TrackFilteredModels2
ProteinId571777
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:305332..307380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571777gene_1335Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571777mRNA_1335-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1335CDS_1335Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1335 ID=mRNA_1335|Name=jgi.p|Nanoce1779_2|571777|organism=Nannochloropsis oceanica|type=mRNA|length=1727bp
CAACAGAGAAACACCATGGCCAGCAGCCGCACATGCCCCACAAACGCCAC
CCCACCCTCACCCTTGCAGGCATTGGAGTTCCTGCGGGTGGTGGGCAAGC
TCAAGACGCTGAAGCGCACGGGATGGGTGAATAATGGAGTGGAGTTGCCC
GAGTCGGTGGCTGACCACATGTATCGCATGGCAATGTGCTCTTTCCTTAT
TACGGACCCGGCGTTGGACCGTGCCCGGCTCATGAAGCTGGCAATAGTAC
ATGATCTGGCAGAGGCCTTGGTTGGCGACATAGTGCCGCATGACGTGCGG
TATACAAAGGAGCAGAAGCGGGTGTTGGAAGAGGAGGCGATCAAAAGCAT
CGCTCGAGACCTGGGCCACGACAGCATTGGGGCCGAAGTTGTTTCGCTGT
GGCTGGAGTACGAGGATCAGAGCACGCCCGAGGCCCGCGTGGTCAAGGAC
TTTGACAAATTCGAGATGATTGTCCAGGCGGATGAATACGAGCGGGCCCA
ACCCAACCAGGACCTGACCGATTTCTTCCAAAGCACAGAAGGCGCGTTCC
AGCACCCGCAAGTAGTAGCCTGGGACGAGGAATTACGGCGTCAGCGAGAT
ACCAAGCTGAAAAGGCATAAAAGGGAGGGCTAGTCGATGGATGTAAATTA
ATTAAAGTTCAATTGAAAATTAATAAATAGGAACTGTACTTGGTGAAGGC
AAAAGCCAGCCTTTCAAAGGAGAGTAAGTTGTCCTCACTTAGCCATCTTC
ATTTCATGTTCGAATATTGCCTTTTTTAGAGGTTCGCGTAGCATCCTCAG
AGCAGCGTTCAGAGCGCAAGCGGGCATTCCCTCATTTGTCACGCTTTTTC
GCTACCCTCTCAATCTCGGTTTGCTTCTGGTTGCCGTTGGGGAGGTTGTG
AGTAAATTGCCCTGAACTCGATTTTGCGGCCTAAATACCAAGAGATAGCC
AAAGCTTCGAAGCAAAATTGAATGTCAAGTAAGAATTACATAGAGGATTG
TGCATCGTTTGGTATATGAACGTTGGGATTGGATGGCAAAAAAGTTGGCT
GGGAGGGAGATCTTGGAAAAAGCATGGAAGGAGAAGGAGGAAGAGGCAAC
AAGTCATGTCACTCACATCACTAACCTTCCTCCTACCGTCACCAGAAACC
TTCACGTGCAACCGCAGCACCCTCCCTACGCCCCTCGCCAAACGCACTTC
AGTTCGTCGGCGAGCCGCAACGACCTGACGAAGCCCTCCCACACTCACAC
GCACACAAGCCCAAGCACATGCCGTAGTAATGAAGCGCAGCATCCACAGC
ACCTTTCGCGTGCCTCTGAAGAAGCCTGCCCCTGCTGCTGCTGCGCCGCC
GCCAGGAGCGCCTCTTCCTTCCCTCGCCCCTCCCTCCGCTTCTCTTCCTT
CCCAGGACTCCCAGCAAGAAAAGCAAGCCCTCCCACCGTTGCAGCCACAG
CCATTCCAGTCTCTGTTTATTCACAGTGATGATAACGAGATGCCAGCCAC
CGACACCGTCACCAGTACCGTTCCGGCTGCCGAGGAAAAGGAAAACATAC
CCTATCCCCCTCCCTCCTCCTCCATATCCTCTTTCCCCAACGCCACCAAG
AGATTCTTCAAGCCACCGACCAAGCGGTTTAAACCTCCCGCCTCCTCCTC
CTCCTCCTCCTCTTCCTCCGTTGTCAACGCGGGCCCCTCTCCTTCCGATC
TCCTCGCTGTTGCCCCTGCCACGGGAG
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protein sequence of jgi.p|Nanoce1779_2|571777

>mRNA_1335-protein ID=mRNA_1335-protein|Name=jgi.p|Nanoce1779_2|571777|organism=Nannochloropsis oceanica|type=polypeptide|length=206bp
MASSRTCPTNATPPSPLQALEFLRVVGKLKTLKRTGWVNNGVELPESVAD
HMYRMAMCSFLITDPALDRARLMKLAIVHDLAEALVGDIVPHDVRYTKEQ
KRVLEEEAIKSIARDLGHDSIGAEVVSLWLEYEDQSTPEARVVKDFDKFE
MIVQADEYERAQPNQDLTDFFQSTEGAFQHPQVVAWDEELRRQRDTKLKR
HKREG*
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mRNA from alignment at scaffold_1:305332..307380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1335 ID=mRNA_1335|Name=jgi.p|Nanoce1779_2|571777|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp|location=Sequence derived from alignment at scaffold_1:305332..307380- (Nannochloropsis oceanica)
CAACAGAGAAACACCATGGCCAGCAGCCGCACATGCCCCACAAACGCCAC
CCCACCCTCACCCTTGCAGGCATTGGAGTTCCTGCGGGTGGTGGGCAAGC
TCAAGACGCTGAAGCGCACGGGATGGGTGAATAATGGAGTGGAGTTGCCC
GAGTCGGTGGCTGACCACATGTATCGCATGGCAATGTGCTCTTTCCTTAT
TACGGACCCGGCGTTGGACCGTGCCCGGCTCATGAAGCTGGCAATAGTAC
ATGATCTGGCAGAGGCCTTGGTTGGCGACATAGTGCCGCATGACGTGCGG
TATACAAAGGAGCAGAAGCGGGTGTTGGAAGAGGTAAGCAAGGGTCGATG
GATTTCTGGGGCTCGAGCGACAACGAAGAGCAGACGAGATTGGATCCACC
ATGTTGGAAGAAGGGCTCTGCATGACAGAAAGTAAGCCCTCTATCCACGT
GATCGAGAGGGGGAAAAACAATCGAGACTCTTCCACCACCTCCCGCCGTT
CACAACATACTTCCTCCCGTCCATTTCAACAGGAGGCGATCAAAAGCATC
GCTCGAGACCTGGGCCACGACAGCATTGGGGCCGAAGTTGTTTCGCTGTG
GCTGGAGTACGAGGATCAGAGCACGCCCGAGGCCCGCGTGGTCAAGGACT
TTGACAAGTGAGTGGAAACGGAAAGATGCATGAAAGAGAGAGATCGATAA
TGTAGCAGGAAAAAATACACACATCATATACACCAACGTGGAATCCCGAT
TGCCTCCTACTCTCTGTAATTTATGTATAGATTCGAGATGATTGTCCAGG
CGGATGAATACGAGCGGGCCCAACCCAACCAGGACCTGACCGATTTCTTC
CAAAGCACAGAAGGCGCGTTCCAGCACCCGCAAGTAGTAGCCTGGGACGA
GGAATTACGGCGTCAGCGAGATACCAAGCTGAAAAGGCATAAAAGGGAGG
GCTAGTCGATGGATGTAAATTAATTAAAGTTCAATTGAAAATTAATAAAT
AGGAACTGTACTTGGTGAAGGCAAAAGCCAGCCTTTCAAAGGAGAGTAAG
TTGTCCTCACTTAGCCATCTTCATTTCATGTTCGAATATTGCCTTTTTTA
GAGGTTCGCGTAGCATCCTCAGAGCAGCGTTCAGAGCGCAAGCGGGCATT
CCCTCATTTGTCACGCTTTTTCGCTACCCTCTCAATCTCGGTTTGCTTCT
GGTTGCCGTTGGGGAGGTTGTGAGTAAATTGCCCTGAACTCGATTTTGCG
GCCTAAATACCAAGAGATAGCCAAAGCTTCGAAGCAAAATTGAATGTCAA
GTAAGAATTACATAGAGGATTGTGCATCGTTTGGTATATGAACGTTGGGA
TTGGATGGCAAAAAAGTTGGCTGGGAGGGAGATCTTGGAAAAAGCATGGA
AGGAGAAGGAGGAAGAGGCAACAAGTCATGTCACTCACATCACTAACCTT
CCTCCTACCGTCACCAGAAACCTTCACGTGCAACCGCAGCACCCTCCCTA
CGCCCCTCGCCAAACGCACTTCAGTTCGTCGGCGAGCCGCAACGACCTGA
CGAAGCCCTCCCACACTCACACGCACACAAGCCCAAGCACATGCCGTAGT
AATGAAGCGCAGCATCCACAGCACCTTTCGCGTGCCTCTGAAGAAGCCTG
CCCCTGCTGCTGCTGCGCCGCCGCCAGGAGCGCCTCTTCCTTCCCTCGCC
CCTCCCTCCGCTTCTCTTCCTTCCCAGGACTCCCAGCAAGAAAAGCAAGC
CCTCCCACCGTTGCAGCCACAGCCATTCCAGTCTCTGTTTATTCACAGTG
ATGATAACGAGATGCCAGCCACCGACACCGTCACCAGTACCGTTCCGGCT
GCCGAGGAAAAGGAAAACATACCCTATCCCCCTCCCTCCTCCTCCATATC
CTCTTTCCCCAACGCCACCAAGAGATTCTTCAAGCCACCGACCAAGCGGT
TTAAACCTCCCGCCTCCTCCTCCTCCTCCTCCTCTTCCTCCGTTGTCAAC
GCGGGCCCCTCTCCTTCCGATCTCCTCGCTGTTGCCCCTGCCACGGGAG
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Coding sequence (CDS) from alignment at scaffold_1:305332..307380-

>mRNA_1335 ID=mRNA_1335|Name=jgi.p|Nanoce1779_2|571777|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at scaffold_1:305332..307380- (Nannochloropsis oceanica)
ATTCGAGATGATTGTCCAGGCGGATGAATACGAGCGGGCCCAACCCAACC
AGGACCTGACCGATTTCTTCCAAAGCACAGAAGGCGCGTTCCAGCACCCG
CAAGTAGTAGCCTGGGACGAGGAATTACGGCGTCAGCGAGATACCAAGCT
GAAAAGGCATAAAAGGGAGGGCTAGGAGGCGATCAAAAGCATCGCTCGAG
ACCTGGGCCACGACAGCATTGGGGCCGAAGTTGTTTCGCTGTGGCTGGAG
TACGAGGATCAGAGCACGCCCGAGGCCCGCGTGGTCAAGGACTTTGACAA
ATGGCCAGCAGCCGCACATGCCCCACAAACGCCACCCCACCCTCACCCTT
GCAGGCATTGGAGTTCCTGCGGGTGGTGGGCAAGCTCAAGACGCTGAAGC
GCACGGGATGGGTGAATAATGGAGTGGAGTTGCCCGAGTCGGTGGCTGAC
CACATGTATCGCATGGCAATGTGCTCTTTCCTTATTACGGACCCGGCGTT
GGACCGTGCCCGGCTCATGAAGCTGGCAATAGTACATGATCTGGCAGAGG
CCTTGGTTGGCGACATAGTGCCGCATGACGTGCGGTATACAAAGGAGCAG
AAGCGGGTGTTGGAAGAGATTCGAGATGATTGTCCAGGCGGATGAATACG
AGCGGGCCCAACCCAACCAGGACCTGACCGATTTCTTCCAAAGCACAGAA
GGCGCGTTCCAGCACCCGCAAGTAGTAGCCTGGGACGAGGAATTACGGCG
TCAGCGAGATACCAAGCTGAAAAGGCATAAAAGGGAGGGCTAGGAGGCGA
TCAAAAGCATCGCTCGAGACCTGGGCCACGACAGCATTGGGGCCGAAGTT
GTTTCGCTGTGGCTGGAGTACGAGGATCAGAGCACGCCCGAGGCCCGCGT
GGTCAAGGACTTTGACAAATGGCCAGCAGCCGCACATGCCCCACAAACGC
CACCCCACCCTCACCCTTGCAGGCATTGGAGTTCCTGCGGGTGGTGGGCA
AGCTCAAGACGCTGAAGCGCACGGGATGGGTGAATAATGGAGTGGAGTTG
CCCGAGTCGGTGGCTGACCACATGTATCGCATGGCAATGTGCTCTTTCCT
TATTACGGACCCGGCGTTGGACCGTGCCCGGCTCATGAAGCTGGCAATAG
TACATGATCTGGCAGAGGCCTTGGTTGGCGACATAGTGCCGCATGACGTG
CGGTATACAAAGGAGCAGAAGCGGGTGTTGGAAGAGATTCGAGATGATTG
TCCAGGCGGATGAATACGAGCGGGCCCAACCCAACCAGGACCTGACCGAT
TTCTTCCAAAGCACAGAAGGCGCGTTCCAGCACCCGCAAGTAGTAGCCTG
GGACGAGGAATTACGGCGTCAGCGAGATACCAAGCTGAAAAGGCATAAAA
GGGAGGGCTAGGAGGCGATCAAAAGCATCGCTCGAGACCTGGGCCACGAC
AGCATTGGGGCCGAAGTTGTTTCGCTGTGGCTGGAGTACGAGGATCAGAG
CACGCCCGAGGCCCGCGTGGTCAAGGACTTTGACAAATGGCCAGCAGCCG
CACATGCCCCACAAACGCCACCCCACCCTCACCCTTGCAGGCATTGGAGT
TCCTGCGGGTGGTGGGCAAGCTCAAGACGCTGAAGCGCACGGGATGGGTG
AATAATGGAGTGGAGTTGCCCGAGTCGGTGGCTGACCACATGTATCGCAT
GGCAATGTGCTCTTTCCTTATTACGGACCCGGCGTTGGACCGTGCCCGGC
TCATGAAGCTGGCAATAGTACATGATCTGGCAGAGGCCTTGGTTGGCGAC
ATAGTGCCGCATGACGTGCGGTATACAAAGGAGCAGAAGCGGGTGTTGGA
AGAG
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Synonyms
Publications