|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 549054 |
| Track | FilteredModels2 |
| ProteinId | 548968 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:304615..307727 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1334 ID=mRNA_1334|Name=jgi.p|Nanoce1779_2|548968|organism=Nannochloropsis oceanica|type=mRNA|length=2709bp
TGTTTTGTGCGTATAGGAAGGGAGTCAGCGCTGATGGTCAATGGTGGCAT
GCACTGTCAAATCATGTCGTTGACTTGCTGGTTTTTCCCGTCATGGGTCC
ACAGACAGGATCGGGCCCCGGGGGCGGGAGAGAGCGGAGGGGCACAGTTG
GAGTGGGGGGAGGCTAGCTAGCTAGCTGGCCACCCCGTATCAACGTACCA
ACCAGCACAAACACTTATATCCCCACTCCAAAACAAACGATAGCAACGTG
TATGCGGGGGAATAGCTGCTTGCTGACCCTGTCCGTGCTCATCTTACTCC
TTCTAGCTGCAACCGAAAGCTTCGTCCCTGCCCCTGCCCTCGCCCGTCAA
CAGAGAAACACCATGGCCAGCAGCCGCACATGCCCCACAAACGCCACCCC
ACCCTCACCCTTGCAGGCATTGGAGTTCCTGCGGGTGGTGGGCAAGCTCA
AGACGCTGAAGCGCACGGGATGGGTGAATAATGGAGTGGAGTTGCCCGAG
TCGGTGGCTGACCACATGTATCGCATGGCAATGTGCTCTTTCCTTATTAC
GGACCCGGCGTTGGACCGTGCCCGGCTCATGAAGCTGGCAATAGTACATG
ATCTGGCAGAGGCCTTGGTTGGCGACATAGTGCCGCATGACGTGCGGTAT
ACAAAGGAGCAGAAGCGGGTGTTGGAAGAGGAGGCGATCAAAAGCATCGC
TCGAGACCTGGGCCACGACAGCATTGGGGCCGAAGTTGTTTCGCTGTGGC
TGGAGTACGAGGATCAGAGCACGCCCGAGGCCCGCGTGGTCAAGGACTTT
GACAAGTGAGTGGAAACGGAAAGATGCATGAAAGAGAGAGATCGATAATG
TAGCAGGAAAAAATACACACATCATATACACCAACGTGGAATCCCGATTG
CCTCCTACTCTCTGTAATTTATGTATAGATTCGAGATGATTGTCCAGGCG
GATGAATACGAGCGGGCCCAACCCAACCAGGACCTGACCGATTTCTTCCA
AAGCACAGAAGGCGCGTTCCAGCACCCGCAAGTAGTAGCCTGGGACGAGG
AATTACGGCGTCAGCGAGATACCAAGCTGAAAAGGCATAAAAGGGAGGGC
TAGTCGATGGATGTAAATTAATTAAAGTTCAATTGAAAATTAATAAATAG
GAACTGTACTTGGTGAAGGCAAAAGCCAGCCTTTCAAAGGAGAGTAAGTT
GTCCTCACTTAGCCATCTTCATTTCATGTTCGAATATTGCCTTTTTTAGA
GGTTCGCGTAGCATCCTCAGAGCAGCGTTCAGAGCGCAAGCGGGCATTCC
CTCATTTGTCACGCTTTTTCGCTACCCTCTCAATCTCGGTTTGCTTCTGG
TTGCCGTTGGGGAGGTTGTGAGTAAATTGCCCTGAACTCGATTTTGCGGC
CTAAATACCAAGAGATAGCCAAAGCTTCGAAGCAAAATTGAATGTCAAGT
AAGAATTACATAGAGGATTGTGCATCGTTTGGTATATGAACGTTGGGATT
GGATGGCAAAAAAGTTGGCTGGGAGGGAGATCTTGGAAAAAGCATGGAAG
GAGAAGGAGGAAGAGGCAACAAGTCATGTCACTCACATCACTAACCTTCC
TCCTACCGTCACCAGAAACCTTCACGTGCAACCGCAGCACCCTCCCTACG
CCCCTCGCCAAACGCACTTCAGTTCGTCGGCGAGCCGCAACGACCTGACG
AAGCCCTCCCACACTCACACGCACACAAGCCCAAGCACATGCCGTAGTAA
TGAAGCGCAGCATCCACAGCACCTTTCGCGTGCCTCTGAAGAAGCCTGCC
CCTGCTGCTGCTGCGCCGCCGCCAGGAGCGCCTCTTCCTTCCCTCGCCCC
TCCCTCCGCTTCTCTTCCTTCCCAGGACTCCCAGCAAGAAAAGCAAGCCC
TCCCACCGTTGCAGCCACAGCCATTCCAGTCTCTGTTTATTCACAGTGAT
GATAACGAGATGCCAGCCACCGACACCGTCACCAGTACCGTTCCGGCTGC
CGAGGAAAAGGAAAACATACCCTATCCCCCTCCCTCCTCCTCCATATCCT
CTTTCCCCAACGCCACCAAGAGATTCTTCAAGCCACCGACCAAGCGGTTT
AAACCTCCCGCCTCCTCCTCCTCCTCCTCCTCTTCCTCCGTTGTCAACGC
GGGCCCCTCTCCTTCCGATCTCCTCGCTGTTGCCCCTGCCACGGGAGGAG
GGACCAAGTACTTCACAGCCATGTACACCAAAAACCCGCGAAAAAAGAAG
AAGACGTGGCAAGAAGGCGTCATCATCGTTGAGCCTATGGCAGGTGGCAA
CAGCAAGGTTTCTCTCCAAAGCGAGAGTGGGAAGTGCGAGGCCCGCAAAA
TATGGTACGGTGGAAACAATGACGGGTTCAAAGAAGGAGATGAATTAACC
ATGATGTCGATAGAGGTCGAAGTTGGCGCGCCACGTGCCGCTGTAGTCCC
TGGCCTTCTCGCCAATATGCTGATGGATGAAATCGAAGGAAGGGGGGAGG
GCGAGGAGGAGGGAGGATGGGGAAAGAAGAGTCTAGGGAGTAGTAGATTT
ATGGTCAAAGGGATGGCGAAAGCGAGGCCGATTGGAATGGTAAGGGAGGG
AGGGAGGGCGGGTTGGATGACGGGGGGACAGGGATCGACCGCTGTGGCTA
TCTCTACGACTACTACAGCAGCTGCTGCTGCGCCGGAGCCCAGGGTTGTC
AAGGAGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|548968 >mRNA_1334-protein ID=mRNA_1334-protein|Name=jgi.p|Nanoce1779_2|548968|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MKRSIHSTFRVPLKKPAPAAAAPPPGAPLPSLAPPSASLPSQDSQQEKQA
LPPLQPQPFQSLFIHSDDNEMPATDTVTSTVPAAEEKENIPYPPPSSSIS
SFPNATKRFFKPPTKRFKPPASSSSSSSSSVVNAGPSPSDLLAVAPATGG
GTKYFTAMYTKNPRKKKKTWQEGVIIVEPMAGGNSKVSLQSESGKCEARK
IWYGGNNDGFKEGDELTMMSIEVEVGAPRAAVVPGLLANMLMDEIEGRGE
GEEEGGWGKKSLGSSRFMVKGMAKARPIGMVREGGRAGWMTGGQGSTAVA
ISTTTTAAAAAPEPRVVKEE back to topmRNA from alignment at scaffold_1:304615..307727- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1334 ID=mRNA_1334|Name=jgi.p|Nanoce1779_2|548968|organism=Nannochloropsis oceanica|type=mRNA|length=3113bp|location=Sequence derived from alignment at scaffold_1:304615..307727- (Nannochloropsis oceanica)
TGTTTTGTGCGTATAGGAAGGGAGTCAGCGCTGATGGTCAATGGTGGCAT
GCACTGTCAAATCATGTCGTTGACTTGCTGGTTTTTCCCGTCATGGGTCC
ACAGACAGGATCGGGCCCCGGGGGCGGGAGAGAGCGGAGGGGCACAGTTG
GAGTGGGGGGAGGCTAGCTAGCTAGCTGGCCACCCCGTATCAACGTACCA
ACCAGCACAAACACTTATATCCCCACTCCAAAACAAACGATAGCAACGTG
TATGCGGGGGAATAGCTGCTTGCTGACCCTGTCCGTGCTCATCTTACTCC
TTCTAGCTGCAACCGAAAGCTTCGTCCCTGCCCCTGCCCTCGCCCGTCAA
CAGAGAAACACCATGGCCAGCAGCCGCACATGCCCCACAAACGCCACCCC
ACCCTCACCCTTGCAGGCATTGGAGTTCCTGCGGGTGGTGGGCAAGCTCA
AGACGCTGAAGCGCACGGGATGGGTGAATAATGGAGTGGAGTTGCCCGAG
TCGGTGGCTGACCACATGTATCGCATGGCAATGTGCTCTTTCCTTATTAC
GGACCCGGCGTTGGACCGTGCCCGGCTCATGAAGCTGGCAATAGTACATG
ATCTGGCAGAGGCCTTGGTTGGCGACATAGTGCCGCATGACGTGCGGTAT
ACAAAGGAGCAGAAGCGGGTGTTGGAAGAGGTAAGCAAGGGTCGATGGAT
TTCTGGGGCTCGAGCGACAACGAAGAGCAGACGAGATTGGATCCACCATG
TTGGAAGAAGGGCTCTGCATGACAGAAAGTAAGCCCTCTATCCACGTGAT
CGAGAGGGGGAAAAACAATCGAGACTCTTCCACCACCTCCCGCCGTTCAC
AACATACTTCCTCCCGTCCATTTCAACAGGAGGCGATCAAAAGCATCGCT
CGAGACCTGGGCCACGACAGCATTGGGGCCGAAGTTGTTTCGCTGTGGCT
GGAGTACGAGGATCAGAGCACGCCCGAGGCCCGCGTGGTCAAGGACTTTG
ACAAGTGAGTGGAAACGGAAAGATGCATGAAAGAGAGAGATCGATAATGT
AGCAGGAAAAAATACACACATCATATACACCAACGTGGAATCCCGATTGC
CTCCTACTCTCTGTAATTTATGTATAGATTCGAGATGATTGTCCAGGCGG
ATGAATACGAGCGGGCCCAACCCAACCAGGACCTGACCGATTTCTTCCAA
AGCACAGAAGGCGCGTTCCAGCACCCGCAAGTAGTAGCCTGGGACGAGGA
ATTACGGCGTCAGCGAGATACCAAGCTGAAAAGGCATAAAAGGGAGGGCT
AGTCGATGGATGTAAATTAATTAAAGTTCAATTGAAAATTAATAAATAGG
AACTGTACTTGGTGAAGGCAAAAGCCAGCCTTTCAAAGGAGAGTAAGTTG
TCCTCACTTAGCCATCTTCATTTCATGTTCGAATATTGCCTTTTTTAGAG
GTTCGCGTAGCATCCTCAGAGCAGCGTTCAGAGCGCAAGCGGGCATTCCC
TCATTTGTCACGCTTTTTCGCTACCCTCTCAATCTCGGTTTGCTTCTGGT
TGCCGTTGGGGAGGTTGTGAGTAAATTGCCCTGAACTCGATTTTGCGGCC
TAAATACCAAGAGATAGCCAAAGCTTCGAAGCAAAATTGAATGTCAAGTA
AGAATTACATAGAGGATTGTGCATCGTTTGGTATATGAACGTTGGGATTG
GATGGCAAAAAAGTTGGCTGGGAGGGAGATCTTGGAAAAAGCATGGAAGG
AGAAGGAGGAAGAGGCAACAAGTCATGTCACTCACATCACTAACCTTCCT
CCTACCGTCACCAGAAACCTTCACGTGCAACCGCAGCACCCTCCCTACGC
CCCTCGCCAAACGCACTTCAGTTCGTCGGCGAGCCGCAACGACCTGACGA
AGCCCTCCCACACTCACACGCACACAAGCCCAAGCACATGCCGTAGTAAT
GAAGCGCAGCATCCACAGCACCTTTCGCGTGCCTCTGAAGAAGCCTGCCC
CTGCTGCTGCTGCGCCGCCGCCAGGAGCGCCTCTTCCTTCCCTCGCCCCT
CCCTCCGCTTCTCTTCCTTCCCAGGACTCCCAGCAAGAAAAGCAAGCCCT
CCCACCGTTGCAGCCACAGCCATTCCAGTCTCTGTTTATTCACAGTGATG
ATAACGAGATGCCAGCCACCGACACCGTCACCAGTACCGTTCCGGCTGCC
GAGGAAAAGGAAAACATACCCTATCCCCCTCCCTCCTCCTCCATATCCTC
TTTCCCCAACGCCACCAAGAGATTCTTCAAGCCACCGACCAAGCGGTTTA
AACCTCCCGCCTCCTCCTCCTCCTCCTCCTCTTCCTCCGTTGTCAACGCG
GGCCCCTCTCCTTCCGATCTCCTCGCTGTTGCCCCTGCCACGGGAGGAGG
GACCAAGTACTTCACAGCCATGTACACCAAAAACCCGCGAAAAAAGAAGA
AGACGTGGCAAGAAGGCGTCATCATCGTTGAGCCTATGGCAGGTGGCAAC
AGCAAGGTAAGCCCTCCTTCCCTCGCTCCCTGCCTCCTCCCTTGTTTCCT
TTCCTTTCTCACACTCATCCTCCCTCCCTCCCTCCCTTCTGTTCTTCGCC
AGGTTTCTCTCCAAAGCGAGAGTGGGAAGTGCGAGGCCCGCAAAATATGG
TACGGTGGAAACAATGACGGGTTCAAAGAAGGAGATGAATTAACCATGAT
GTCGATAGAGGTAAGTGAGTCCCTCCCCCTCTTCCTTCCCTTTCTTCCTC
CTTCCTTCCGTCTCTCCCTTCCTTCCTCCCTGGCCCGTCCTCATCCTCCA
CCCAAATCCATGCCTACAGGTCGAAGTTGGCGCGCCACGTGCCGCTGTAG
TCCCTGGCCTTCTCGCCAATATGCTGATGGATGAAATCGAAGGAAGGGGG
GAGGGCGAGGAGGAGGGAGGATGGGGAAAGAAGAGTCTAGGGAGTAGTAG
ATTTATGGTCAAAGGGATGGCGAAAGCGAGGCCGATTGGAATGGTAAGGG
AGGGAGGGAGGGCGGGTTGGATGACGGGGGGACAGGGATCGACCGCTGTG
GCTATCTCTACGACTACTACAGCAGCTGCTGCTGCGCCGGAGCCCAGGGT
TGTCAAGGAGGAG back to topCoding sequence (CDS) from alignment at scaffold_1:304615..307727- >mRNA_1334 ID=mRNA_1334|Name=jgi.p|Nanoce1779_2|548968|organism=Nannochloropsis oceanica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_1:304615..307727- (Nannochloropsis oceanica)
GTCGAAGTTGGCGCGCCACGTGCCGCTGTAGTCCCTGGCCTTCTCGCCAA
TATGCTGATGGATGAAATCGAAGGAAGGGGGGAGGGCGAGGAGGAGGGAG
GATGGGGAAAGAAGAGTCTAGGGAGTAGTAGATTTATGGTCAAAGGGATG
GCGAAAGCGAGGCCGATTGGAATGGTAAGGGAGGGAGGGAGGGCGGGTTG
GATGACGGGGGGACAGGGATCGACCGCTGTGGCTATCTCTACGACTACTA
CAGCAGCTGCTGCTGCGCCGGAGCCCAGGGTTGTCAAGGAGGAGGTTTCT
CTCCAAAGCGAGAGTGGGAAGTGCGAGGCCCGCAAAATATGGTACGGTGG
AAACAATGACGGGTTCAAAGAAGGAGATGAATTAACCATGATGTCGATAG
AGATGAAGCGCAGCATCCACAGCACCTTTCGCGTGCCTCTGAAGAAGCCT
GCCCCTGCTGCTGCTGCGCCGCCGCCAGGAGCGCCTCTTCCTTCCCTCGC
CCCTCCCTCCGCTTCTCTTCCTTCCCAGGACTCCCAGCAAGAAAAGCAAG
CCCTCCCACCGTTGCAGCCACAGCCATTCCAGTCTCTGTTTATTCACAGT
GATGATAACGAGATGCCAGCCACCGACACCGTCACCAGTACCGTTCCGGC
TGCCGAGGAAAAGGAAAACATACCCTATCCCCCTCCCTCCTCCTCCATAT
CCTCTTTCCCCAACGCCACCAAGAGATTCTTCAAGCCACCGACCAAGCGG
TTTAAACCTCCCGCCTCCTCCTCCTCCTCCTCCTCTTCCTCCGTTGTCAA
CGCGGGCCCCTCTCCTTCCGATCTCCTCGCTGTTGCCCCTGCCACGGGAG
GAGGGACCAAGTACTTCACAGCCATGTACACCAAAAACCCGCGAAAAAAG
AAGAAGACGTGGCAAGAAGGCGTCATCATCGTTGAGCCTATGGCAGGTGG
CAACAGCAAGGTCGAAGTTGGCGCGCCACGTGCCGCTGTAGTCCCTGGCC
TTCTCGCCAATATGCTGATGGATGAAATCGAAGGAAGGGGGGAGGGCGAG
GAGGAGGGAGGATGGGGAAAGAAGAGTCTAGGGAGTAGTAGATTTATGGT
CAAAGGGATGGCGAAAGCGAGGCCGATTGGAATGGTAAGGGAGGGAGGGA
GGGCGGGTTGGATGACGGGGGGACAGGGATCGACCGCTGTGGCTATCTCT
ACGACTACTACAGCAGCTGCTGCTGCGCCGGAGCCCAGGGTTGTCAAGGA
GGAGGTTTCTCTCCAAAGCGAGAGTGGGAAGTGCGAGGCCCGCAAAATAT
GGTACGGTGGAAACAATGACGGGTTCAAAGAAGGAGATGAATTAACCATG
ATGTCGATAGAGATGAAGCGCAGCATCCACAGCACCTTTCGCGTGCCTCT
GAAGAAGCCTGCCCCTGCTGCTGCTGCGCCGCCGCCAGGAGCGCCTCTTC
CTTCCCTCGCCCCTCCCTCCGCTTCTCTTCCTTCCCAGGACTCCCAGCAA
GAAAAGCAAGCCCTCCCACCGTTGCAGCCACAGCCATTCCAGTCTCTGTT
TATTCACAGTGATGATAACGAGATGCCAGCCACCGACACCGTCACCAGTA
CCGTTCCGGCTGCCGAGGAAAAGGAAAACATACCCTATCCCCCTCCCTCC
TCCTCCATATCCTCTTTCCCCAACGCCACCAAGAGATTCTTCAAGCCACC
GACCAAGCGGTTTAAACCTCCCGCCTCCTCCTCCTCCTCCTCCTCTTCCT
CCGTTGTCAACGCGGGCCCCTCTCCTTCCGATCTCCTCGCTGTTGCCCCT
GCCACGGGAGGAGGGACCAAGTACTTCACAGCCATGTACACCAAAAACCC
GCGAAAAAAGAAGAAGACGTGGCAAGAAGGCGTCATCATCGTTGAGCCTA
TGGCAGGTGGCAACAGCAAGGTCGAAGTTGGCGCGCCACGTGCCGCTGTA
GTCCCTGGCCTTCTCGCCAATATGCTGATGGATGAAATCGAAGGAAGGGG
GGAGGGCGAGGAGGAGGGAGGATGGGGAAAGAAGAGTCTAGGGAGTAGTA
GATTTATGGTCAAAGGGATGGCGAAAGCGAGGCCGATTGGAATGGTAAGG
GAGGGAGGGAGGGCGGGTTGGATGACGGGGGGACAGGGATCGACCGCTGT
GGCTATCTCTACGACTACTACAGCAGCTGCTGCTGCGCCGGAGCCCAGGG
TTGTCAAGGAGGAGGTTTCTCTCCAAAGCGAGAGTGGGAAGTGCGAGGCC
CGCAAAATATGGTACGGTGGAAACAATGACGGGTTCAAAGAAGGAGATGA
ATTAACCATGATGTCGATAGAGATGAAGCGCAGCATCCACAGCACCTTTC
GCGTGCCTCTGAAGAAGCCTGCCCCTGCTGCTGCTGCGCCGCCGCCAGGA
GCGCCTCTTCCTTCCCTCGCCCCTCCCTCCGCTTCTCTTCCTTCCCAGGA
CTCCCAGCAAGAAAAGCAAGCCCTCCCACCGTTGCAGCCACAGCCATTCC
AGTCTCTGTTTATTCACAGTGATGATAACGAGATGCCAGCCACCGACACC
GTCACCAGTACCGTTCCGGCTGCCGAGGAAAAGGAAAACATACCCTATCC
CCCTCCCTCCTCCTCCATATCCTCTTTCCCCAACGCCACCAAGAGATTCT
TCAAGCCACCGACCAAGCGGTTTAAACCTCCCGCCTCCTCCTCCTCCTCC
TCCTCTTCCTCCGTTGTCAACGCGGGCCCCTCTCCTTCCGATCTCCTCGC
TGTTGCCCCTGCCACGGGAGGAGGGACCAAGTACTTCACAGCCATGTACA
CCAAAAACCCGCGAAAAAAGAAGAAGACGTGGCAAGAAGGCGTCATCATC
GTTGAGCCTATGGCAGGTGGCAACAGCAAG back to top
|