jgi.p|Nanoce1779_2|622135, mRNA_1331 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|622135
Unique NamemRNA_1331
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length927
Alignment locationscaffold_1:295210..296703 +

Link to JBrowse

Properties
Property NameValue
TranscriptId622221
TrackFilteredModels2
ProteinId622135
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:295210..296703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622135gene_1331Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622135mRNA_1331-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1331CDS_1331Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1331 ID=mRNA_1331|Name=jgi.p|Nanoce1779_2|622135|organism=Nannochloropsis oceanica|type=mRNA|length=927bp
ATGGATGGTGAAGGTCAAGAAGGCGGGGATGGAGGCGAGCGGATTGACTG
GCGCAAGGGCGCGCAGATCGGAAAAGGTACGTTTGGGAATGTATTCGTGG
GGTTGAATGCCTCCACAGGCGAACGATTTGCAGTCAAGCAGATTGGGCTG
GTAGATGGATCGAGAGGAGAGGTTGCCAGGCTGGAGAAGGAGATCCTGTT
GATGAAACGCCTGCGGCACAAGCACATTGTCCGTTATCTCGGCACCGCCC
ATGATCCGCATGCCTTGTATATCTTCATGGAGTACGTCCCCGGGGGGAGC
ATCGCGTCCATGCTGGGCCAATACGGCGCTTTCGGAGAGGCCCTTACTCG
ACGCCTGGTCGCTCAAATTGTCTCTGGGGTCGCTTATCTCCACTCGATGG
GCATCATCCACCGCGACGTCAAGGGCGCCAACGTCCTCGTCACCAACAAC
GGGATAGCCAAACTCGCCGATTTTGGTTGCTCCCGTCAACTCCAAGACCT
GCAAACCTCCGCCTCGGCCTCCCTCGAACATTCTCTTAAAAACATTACGG
GTTCCGTTCCCTGGATGGCACCTGAAGTTATCAAGCAGACGGGGCGGCTG
CCCAGAGCCGCTGATATATGGTCTTTAGGGGCCACGATCATCGAGATGGC
AACAGCTGCGCACCCTTGGCCGCAGTTCTCAAATCAGCTGGCGGCACTGT
TTCATGTGGCGACTGCCACGCAGCCCCCCGCGTTACCTGCAAGCATGAGT
AAGATTGGGAAAGATTTTATGTGTCGGTGTCTGGCTATCAACGAAGCTGA
AAGAGCGACAGCGCAAGAGTTGTTGAGGCATCCTTTTATTGCGAAGGAGA
AGGATGAAAAGCTGAAGACGTTTATTTCCAAGAGAAGCGAGAGAGTGGGA
TTCTCTGCAGAGAAGCAGTCGATTTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|622135

>mRNA_1331-protein ID=mRNA_1331-protein|Name=jgi.p|Nanoce1779_2|622135|organism=Nannochloropsis oceanica|type=polypeptide|length=309bp
MDGEGQEGGDGGERIDWRKGAQIGKGTFGNVFVGLNASTGERFAVKQIGL
VDGSRGEVARLEKEILLMKRLRHKHIVRYLGTAHDPHALYIFMEYVPGGS
IASMLGQYGAFGEALTRRLVAQIVSGVAYLHSMGIIHRDVKGANVLVTNN
GIAKLADFGCSRQLQDLQTSASASLEHSLKNITGSVPWMAPEVIKQTGRL
PRAADIWSLGATIIEMATAAHPWPQFSNQLAALFHVATATQPPALPASMS
KIGKDFMCRCLAINEAERATAQELLRHPFIAKEKDEKLKTFISKRSERVG
FSAEKQSI*
back to top

mRNA from alignment at scaffold_1:295210..296703+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1331 ID=mRNA_1331|Name=jgi.p|Nanoce1779_2|622135|organism=Nannochloropsis oceanica|type=mRNA|length=1494bp|location=Sequence derived from alignment at scaffold_1:295210..296703+ (Nannochloropsis oceanica)
ATGGATGGTGAAGGTCAAGAAGGCGGGGATGGAGGCGAGCGGATTGACTG
GCGCAAGGGCGCGCAGATCGGAAAAGGTACGTTTGGGAATGTATTCGTGG
GGTTGAATGCCTCCACAGGCGAACGATTTGCAGTCAAGCAGATTGGGCTG
GTAGATGGATCGAGAGGAGAGGTTGCCAGGCTGGAGAAGGAGATCCTGTT
GATGAAACGCCTGCGGCACAAGCACATTGTCCGTTATCTCGGCACCGCCC
ATGATCCGCATGCCTTGTATATCTTCATGGAGTACGTCCCCGGGGGGAGC
ATCGCGTCCATGCTGGGCCAATACGGCGCTTTCGGAGAGGCCCTTACTCG
ACGCCTGGTCGCTCAAATTGTCTCTGGGGTCGCTTATCTCCACTCGATGG
GCATCATCCACCGCGACGTCAAGGGCGCCAACGTCCTCGTCACCAACAAC
GGGATAGCCAAACTCGCCGATTTTGGTTGCTCCCGTCAACTCCAAGACCT
GCAAACCTCCGCCTCGGCCTCCCTCGAACATTCTCTTAAAAACATTACGG
GTTCCGTTCCCTGGATGGCACCTGAAGTTATCAAGCAGACGGGGCGGCTG
CCCAGAGCCGCTGATATATGGTCTTTAGGGGCCACGATCATCGAGATGGC
AACAGCTGCGCACCCTTGGCCGCAGTTCTCAAATCAGCTGGCGGCACTGT
TTCATGTGGCGACTGCCACGCAGCCCCCCGCGTTACCTGCAAGCATGAGT
AAGATTGGGAAAGATTTTATGTGTCGGTGTCTGGCTATCAACGAAGCTGA
AAGAGCGACAGCGCAAGAGTTGTTGAGGCATCCTTTTATTGCGAAGGAGG
TGGCGTCTGAGGACCGAGAGGAAGCGGCGGGATGTACTGGAGAAGGAATA
GGAGGAGGATGGGGGGGGTTGACGGTGAGAGAAGAGGGAGTGCAGGCTCA
GGTTTCGCCGTCCAAGCGGGTCGGAATGGTGGTTCAGGAAGATAGCAAGA
AGGGAGGCAAGGGAGGGATGGGCTGGGGGAATGAAGAGCCGACGGAGCTT
TTCGCGTCCTCTCTAAATTTGGGCAAGAAGAGATGATTATGACTCAAATA
GACGGTGTGAGAAGGAGGCAGGATAGGTGGTGAGGAACAACAAGGGAGTG
AGGGAGCCTTGCATTCGGAGGAAGTGGGGAAACGAGTAAGGAGCGGGGTG
TGATGTTTTCCTTGTATGTGTGATGTTTTTTTTTGTTTATGTGGGCGTGT
ATGCATGTTCGTGTGAGTATGAGTGTGGGTATGGGTATTTGTCGTCCTTG
TTTGCGCGTATGTTTTGGTCTGCTATAGAAGAGAAGAATTTCACTCAGGT
CGGTGCGCGAAGAAAGGAGAAAAAAATTAGAAGTTGTAGAAGTGATTTGT
CTCGCGCTTATTGTAGAAGGATGAAAAGCTGAAGACGTTTATTTCCAAGA
GAAGCGAGAGAGTGGGATTCTCTGCAGAGAAGCAGTCGATTTGA
back to top

Coding sequence (CDS) from alignment at scaffold_1:295210..296703+

>mRNA_1331 ID=mRNA_1331|Name=jgi.p|Nanoce1779_2|622135|organism=Nannochloropsis oceanica|type=CDS|length=1854bp|location=Sequence derived from alignment at scaffold_1:295210..296703+ (Nannochloropsis oceanica)
ATGGATGGTGAAGGTCAAGAAGGCGGGGATGGAGGCGAGCGGATTGACTG
GCGCAAGGGCGCGCAGATCGGAAAAGGTACGTTTGGGAATGTATTCGTGG
GGTTGAATGCCTCCACAGGCGAACGATTTGCAGTCAAGCAGATTGGGCTG
GTAGATGGATCGAGAGGAGAGGTTGCCAGGCTGGAGAAGGAGATCCTGTT
GATGAAACGCCTGCGGCACAAGCACATTGTCCGTTATCTCGGCACCGCCC
ATGATCCGCATGCCTTGTATATCTTCATGGAGTACGTCCCCGGGGGGAGC
ATCGCGTCCATGCTGGGCCAATACGGCGCTTTCGGAGAGGCCCTTACTCG
ACGCCTGGTCGCTCAAATTGTCTCTGGGGTCGCTTATCTCCACTCGATGG
GCATCATCCACCGCGACGTCAAGGGCGCCAACGTCCTCGTCACCAACAAC
GGGATAGCCAAACTCGCCGATTTTGGTTGCTCCCGTCAACTCCAAGACCT
GCAAACCTCCGCCTCGGCCTCCCTCGAACATTCTCTTAAAAACATTACGG
GTTCCGTTCCCTGGATGGCACCTGAAGTTATCAAGCAGACGGGGCGGCTG
CCCAGAGCCGCTGATATATGGTCTTTAGGGGCCACGATCATCGAGATGGC
AACAGCTGCGCACCCTTGGCCGCAGTTCTCAAATCAGCTGGCGGCACTGT
TTCATGTGGCGACTGCCACGCAGCCCCCCGCGTTACCTGCAAGCATGAGT
AAGATTGGGAAAGATTTTATGTGTCGGTGTCTGGCTATCAACGAAGCTGA
AAGAGCGACAGCGCAAGAGTTGTTGAGGCATCCTTTTATTGCGAAGGAGA
AGGATGAAAAGCTGAAGACGTTTATTTCCAAGAGAAGCGAGAGAGTGGGA
TTCTCTGCAGAGAAGCAGTCGATTTGAATGGATGGTGAAGGTCAAGAAGG
CGGGGATGGAGGCGAGCGGATTGACTGGCGCAAGGGCGCGCAGATCGGAA
AAGGTACGTTTGGGAATGTATTCGTGGGGTTGAATGCCTCCACAGGCGAA
CGATTTGCAGTCAAGCAGATTGGGCTGGTAGATGGATCGAGAGGAGAGGT
TGCCAGGCTGGAGAAGGAGATCCTGTTGATGAAACGCCTGCGGCACAAGC
ACATTGTCCGTTATCTCGGCACCGCCCATGATCCGCATGCCTTGTATATC
TTCATGGAGTACGTCCCCGGGGGGAGCATCGCGTCCATGCTGGGCCAATA
CGGCGCTTTCGGAGAGGCCCTTACTCGACGCCTGGTCGCTCAAATTGTCT
CTGGGGTCGCTTATCTCCACTCGATGGGCATCATCCACCGCGACGTCAAG
GGCGCCAACGTCCTCGTCACCAACAACGGGATAGCCAAACTCGCCGATTT
TGGTTGCTCCCGTCAACTCCAAGACCTGCAAACCTCCGCCTCGGCCTCCC
TCGAACATTCTCTTAAAAACATTACGGGTTCCGTTCCCTGGATGGCACCT
GAAGTTATCAAGCAGACGGGGCGGCTGCCCAGAGCCGCTGATATATGGTC
TTTAGGGGCCACGATCATCGAGATGGCAACAGCTGCGCACCCTTGGCCGC
AGTTCTCAAATCAGCTGGCGGCACTGTTTCATGTGGCGACTGCCACGCAG
CCCCCCGCGTTACCTGCAAGCATGAGTAAGATTGGGAAAGATTTTATGTG
TCGGTGTCTGGCTATCAACGAAGCTGAAAGAGCGACAGCGCAAGAGTTGT
TGAGGCATCCTTTTATTGCGAAGGAGAAGGATGAAAAGCTGAAGACGTTT
ATTTCCAAGAGAAGCGAGAGAGTGGGATTCTCTGCAGAGAAGCAGTCGAT
TTGA
back to top
Synonyms
Publications