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Properties
| Property Name | Value |
|---|
| TranscriptId | 537248 |
| Track | FilteredModels2 |
| ProteinId | 537162 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:349231..350547 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_133 ID=mRNA_133|Name=jgi.p|Nanoce1779_2|537162|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp
AGTAACCCTTTGTCGATTACCACTTACACTTGTATCACAGGTAGAAACAC
ACGAATGGGCAAGCTCAACGAGCATATCCGGGGCATTGTGGCGACAAGCA
ATACTTGTTTTACCGTCTTGGGCTTGTTCTTGGGAGGCTTGGCAAGTTAC
CTGCTTTACGCCACGGCACCTTCCACCTTTACCTTGGGGAGCTTGTTCAA
AGGGGGATGGATTGTCTGGACGCTACTGGTAGGCTTAGGCCTGATCCTCT
CGTCCTGCATAAATTGCGTTGCGCTTAAGAGACAGATGGTGCGAGAAGGT
CCTTGCGGTGGCCGAAAGTTATTGTCAATGTACCAACTGCTAGTAATGGG
CTTGATGGTTGCTTTTGCCGTTGGCTTGCTGACGATGCGCACGATGCAGA
GCGCAGTTCCTCTTCTCTTAGAGCACCCAAAAGCTCCCTATTCGAGGTCC
GAGCAAAAAATGTTAGCTCCATACTTTGACCGCGTCTACTTCAAGACCAA
GGCTGTCGTGGAGAGGGATTACAGCGAGCAAGGTGGAAGTTATAAGTGGT
TTCTGGCTTGGACAAGACAGAACTGCCCTTTATCAATGGACATGGGCTCG
TGCACCACTTGTAACAGTGATGGTGACTCCAGCATCCCTTACAATGACGG
ATGCTGTCCTCGGCAAGATCTGTGTACCGTAGGAAACCTAGAGGCGTGCC
CTTACATGCGGTGCCGACTAGGCATTGCTACCTTTTTGAATCGCCGTCTG
GGGCGCATGCAAAATTACATGTATTTTTTTCTCGCCCTCCTATTACTTGT
CATTCTCAGCACCTGCCTTCTGATCTGCTACAACCCCCGTGACTCGTTCG
AGGACCTCCTGGCCAAAACAGGCGTGGTAGTAATGCACGCACCAAACTCA
CGACAACGACGCACAGGTCGCAGTGGGAGGCCTGCTACACAGGATTTTGA
GCAGTCTCCCTCCGTTTCACCCTCGTCTGCGCAATTTAGAGGACGGGCAC
CGTCGGCGGCTGGAGTTTCAGTGGTTAGGGCCAGTCCAATATCCAATTCA
TCTGTGGATGACGGAGAAGGGTGGCGTGGAGGCACGCGGTACGGTAGAAG
TAGGGGTACTGAGGTGCGGTCCCCCATGCAAATAGTATAAGGGTGAGAAG
TGTAGGGTGAAATAATACAAAAAACACAAACTTTAAATGGCACGTATCGA
TTCTTCCAAATAATAGTTCACTCGGCTATATGAGTCTGCACTTGCTGCTG
GTGCTTGTTGTTGGTGGTGTGAGGCTGAGAGCCGTATAAATGATATAAAA
AGCGAAAAATTAAATGG back to topprotein sequence of jgi.p|Nanoce1779_2|537162 >mRNA_133-protein ID=mRNA_133-protein|Name=jgi.p|Nanoce1779_2|537162|organism=Nannochloropsis oceanica|type=polypeptide|length=362bp
MGKLNEHIRGIVATSNTCFTVLGLFLGGLASYLLYATAPSTFTLGSLFKG
GWIVWTLLVGLGLILSSCINCVALKRQMVREGPCGGRKLLSMYQLLVMGL
MVAFAVGLLTMRTMQSAVPLLLEHPKAPYSRSEQKMLAPYFDRVYFKTKA
VVERDYSEQGGSYKWFLAWTRQNCPLSMDMGSCTTCNSDGDSSIPYNDGC
CPRQDLCTVGNLEACPYMRCRLGIATFLNRRLGRMQNYMYFFLALLLLVI
LSTCLLICYNPRDSFEDLLAKTGVVVMHAPNSRQRRTGRSGRPATQDFEQ
SPSVSPSSAQFRGRAPSAAGVSVVRASPISNSSVDDGEGWRGGTRYGRSR
GTEVRSPMQIV* back to topmRNA from alignment at scaffold_3:349231..350547- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_133 ID=mRNA_133|Name=jgi.p|Nanoce1779_2|537162|organism=Nannochloropsis oceanica|type=mRNA|length=1317bp|location=Sequence derived from alignment at scaffold_3:349231..350547- (Nannochloropsis oceanica)
AGTAACCCTTTGTCGATTACCACTTACACTTGTATCACAGGTAGAAACAC
ACGAATGGGCAAGCTCAACGAGCATATCCGGGGCATTGTGGCGACAAGCA
ATACTTGTTTTACCGTCTTGGGCTTGTTCTTGGGAGGCTTGGCAAGTTAC
CTGCTTTACGCCACGGCACCTTCCACCTTTACCTTGGGGAGCTTGTTCAA
AGGGGGATGGATTGTCTGGACGCTACTGGTAGGCTTAGGCCTGATCCTCT
CGTCCTGCATAAATTGCGTTGCGCTTAAGAGACAGATGGTGCGAGAAGGT
CCTTGCGGTGGCCGAAAGTTATTGTCAATGTACCAACTGCTAGTAATGGG
CTTGATGGTTGCTTTTGCCGTTGGCTTGCTGACGATGCGCACGATGCAGA
GCGCAGTTCCTCTTCTCTTAGAGCACCCAAAAGCTCCCTATTCGAGGTCC
GAGCAAAAAATGTTAGCTCCATACTTTGACCGCGTCTACTTCAAGACCAA
GGCTGTCGTGGAGAGGGATTACAGCGAGCAAGGTGGAAGTTATAAGTGGT
TTCTGGCTTGGACAAGACAGAACTGCCCTTTATCAATGGACATGGGCTCG
TGCACCACTTGTAACAGTGATGGTGACTCCAGCATCCCTTACAATGACGG
ATGCTGTCCTCGGCAAGATCTGTGTACCGTAGGAAACCTAGAGGCGTGCC
CTTACATGCGGTGCCGACTAGGCATTGCTACCTTTTTGAATCGCCGTCTG
GGGCGCATGCAAAATTACATGTATTTTTTTCTCGCCCTCCTATTACTTGT
CATTCTCAGCACCTGCCTTCTGATCTGCTACAACCCCCGTGACTCGTTCG
AGGACCTCCTGGCCAAAACAGGCGTGGTAGTAATGCACGCACCAAACTCA
CGACAACGACGCACAGGTCGCAGTGGGAGGCCTGCTACACAGGATTTTGA
GCAGTCTCCCTCCGTTTCACCCTCGTCTGCGCAATTTAGAGGACGGGCAC
CGTCGGCGGCTGGAGTTTCAGTGGTTAGGGCCAGTCCAATATCCAATTCA
TCTGTGGATGACGGAGAAGGGTGGCGTGGAGGCACGCGGTACGGTAGAAG
TAGGGGTACTGAGGTGCGGTCCCCCATGCAAATAGTATAAGGGTGAGAAG
TGTAGGGTGAAATAATACAAAAAACACAAACTTTAAATGGCACGTATCGA
TTCTTCCAAATAATAGTTCACTCGGCTATATGAGTCTGCACTTGCTGCTG
GTGCTTGTTGTTGGTGGTGTGAGGCTGAGAGCCGTATAAATGATATAAAA
AGCGAAAAATTAAATGG back to topCoding sequence (CDS) from alignment at scaffold_3:349231..350547- >mRNA_133 ID=mRNA_133|Name=jgi.p|Nanoce1779_2|537162|organism=Nannochloropsis oceanica|type=CDS|length=1086bp|location=Sequence derived from alignment at scaffold_3:349231..350547- (Nannochloropsis oceanica)
ATGGGCAAGCTCAACGAGCATATCCGGGGCATTGTGGCGACAAGCAATAC
TTGTTTTACCGTCTTGGGCTTGTTCTTGGGAGGCTTGGCAAGTTACCTGC
TTTACGCCACGGCACCTTCCACCTTTACCTTGGGGAGCTTGTTCAAAGGG
GGATGGATTGTCTGGACGCTACTGGTAGGCTTAGGCCTGATCCTCTCGTC
CTGCATAAATTGCGTTGCGCTTAAGAGACAGATGGTGCGAGAAGGTCCTT
GCGGTGGCCGAAAGTTATTGTCAATGTACCAACTGCTAGTAATGGGCTTG
ATGGTTGCTTTTGCCGTTGGCTTGCTGACGATGCGCACGATGCAGAGCGC
AGTTCCTCTTCTCTTAGAGCACCCAAAAGCTCCCTATTCGAGGTCCGAGC
AAAAAATGTTAGCTCCATACTTTGACCGCGTCTACTTCAAGACCAAGGCT
GTCGTGGAGAGGGATTACAGCGAGCAAGGTGGAAGTTATAAGTGGTTTCT
GGCTTGGACAAGACAGAACTGCCCTTTATCAATGGACATGGGCTCGTGCA
CCACTTGTAACAGTGATGGTGACTCCAGCATCCCTTACAATGACGGATGC
TGTCCTCGGCAAGATCTGTGTACCGTAGGAAACCTAGAGGCGTGCCCTTA
CATGCGGTGCCGACTAGGCATTGCTACCTTTTTGAATCGCCGTCTGGGGC
GCATGCAAAATTACATGTATTTTTTTCTCGCCCTCCTATTACTTGTCATT
CTCAGCACCTGCCTTCTGATCTGCTACAACCCCCGTGACTCGTTCGAGGA
CCTCCTGGCCAAAACAGGCGTGGTAGTAATGCACGCACCAAACTCACGAC
AACGACGCACAGGTCGCAGTGGGAGGCCTGCTACACAGGATTTTGAGCAG
TCTCCCTCCGTTTCACCCTCGTCTGCGCAATTTAGAGGACGGGCACCGTC
GGCGGCTGGAGTTTCAGTGGTTAGGGCCAGTCCAATATCCAATTCATCTG
TGGATGACGGAGAAGGGTGGCGTGGAGGCACGCGGTACGGTAGAAGTAGG
GGTACTGAGGTGCGGTCCCCCATGCAAATAGTATAA back to top
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