jgi.p|Nanoce1779_2|571753, mRNA_1329 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571753
Unique Name	mRNA_1329
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1142
Alignment location	scaffold_1:288664..290209 -

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Properties


Property Name	Value
TranscriptId	571839
Track	FilteredModels2
ProteinId	571753

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:288664..290209 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571753	gene_1329	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571753	mRNA_1329-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1329	CDS_1329	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:288664..290209-
coding sequence from alignment at scaffold_1:288664..290209-

mRNA sequence

>mRNA_1329 ID=mRNA_1329|Name=jgi.p|Nanoce1779_2|571753|organism=Nannochloropsis oceanica|type=mRNA|length=1142bp
AGACAAGCATGGCGAACGACGGCAGCGACAAAAAGGTGGAGCTTCTGGAC
CTGATCAAGAAAGGCTGGTTCGAAGAGACGCAGAGCTTTTGGTCAGGCCA
ACGCTTTTCCCTTCAAGTGGAAAAGGTCCTCTTCCATGCCCGTTCCGACT
TCCAAGACGTCCTCCTCTTCCAGTCAACTTCCTACGGCAAAGTTCTCGTC
CTAGATGGAGTGATTCAAGCGACGGAGCGCGATGAAATGGCCTACCAAGA
AATGATTGTTCATATGCCTCTGTTCGCCCACCCGAACCCGCGCAAGGTCC
TGATAATCGGCGGCGGAGACGGAGGCGTGTTGAGGGAAGTGGCGAAGCAT
CCGTCGGTAGAGGTAATTCACATGTGCGAAATTGACAAGATGGTCATTGA
CGTGAGCAAAGAGTTTATGGGCGACACCCTGGCGACGTCCTATGACGACC
CGCGATTGACACTGGTGGTGGATGATGCAGCTAAATTTGTGACGAAGGAA
GGCCATGAAACGTATGACTGTATCGTCGTCGACTCCTCCGATCCAGTGGG
CCCCGCCGAGGCTTTGTTCGAGCCCGCCTTCTTCCGTTCCCTCCATCAAG
CCCTCAACCCCAACGGGATCATCTGCACACAGGCCGAATGCCAATGGCTG
CACCTGGATTTCATCGCCAAGGTCTACAAATCCTGCTGCGACATTTTCCC
CCAAGTTGAATATGCTTATACATCCATCCCTACTTACCCCTCGGGGCAAA
TTGGCTTCATGCTCTTGTCCAACAGCACCAGCAGCGGAGAAGCTCAGGCA
CCTTTGCGGACCCCGGCCCGTACGCCCTCGTCGGACGTACAAGCGAAGCT
GAGGTTTTACAATCCGGCCTTACACACAGCTGCATTTGCCTTGCCCGAAT
TTGCCCGGCGCAAATTGGAGGAGGCCCGGGGGGGGAAGTAAAAAAGAGGG
GATCGGGCAGAGGGGAGGTTGTAAGAGGGCCTCAGGATTAGGGTTGCGCG
CTGCATGTACGCATGGATTGACTCATGAAATGGAAACAAGACAAAGAAAA
GATAATACTGACATGAAACGTCAAGCTCTAGGAGGATGCATGGCTTGTGT
GTCGAAGCGTAAAAAAAAGGAGCATGGGCCCGTCGATTCTGA

protein sequence of jgi.p|Nanoce1779_2|571753

>mRNA_1329-protein ID=mRNA_1329-protein|Name=jgi.p|Nanoce1779_2|571753|organism=Nannochloropsis oceanica|type=polypeptide|length=311bp
MANDGSDKKVELLDLIKKGWFEETQSFWSGQRFSLQVEKVLFHARSDFQD
VLLFQSTSYGKVLVLDGVIQATERDEMAYQEMIVHMPLFAHPNPRKVLII
GGGDGGVLREVAKHPSVEVIHMCEIDKMVIDVSKEFMGDTLATSYDDPRL
TLVVDDAAKFVTKEGHETYDCIVVDSSDPVGPAEALFEPAFFRSLHQALN
PNGIICTQAECQWLHLDFIAKVYKSCCDIFPQVEYAYTSIPTYPSGQIGF
MLLSNSTSSGEAQAPLRTPARTPSSDVQAKLRFYNPALHTAAFALPEFAR
RKLEEARGGK*

mRNA from alignment at scaffold_1:288664..290209-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1329 ID=mRNA_1329|Name=jgi.p|Nanoce1779_2|571753|organism=Nannochloropsis oceanica|type=mRNA|length=1546bp|location=Sequence derived from alignment at scaffold_1:288664..290209- (Nannochloropsis oceanica)
AGACAAGCATGGCGAACGACGGCAGCGACAAAAAGGTGGAGCTTCTGGAC
CTGATCAAGAAAGGCTGGTTCGAAGAGACGCAGAGCTTTTGGTCAGGTAA
GTGTCCGTCTATATGTCTCTTTGCCCCTCCCCTCCGTTATCCTCTCATCA
ACAAGTCCAGTACAAAAGAGTGATGCTTGAAAAACTCGTGTCGATTTTCA
ATTTTTCACCCACTCCTTCCGGTTATTTAACTTTACAGGCCAACGCTTTT
CCCTTCAAGTGGAAAAGGTCCTCTTCCATGCCCGTTCCGACTTCCAAGAC
GTCCTCCTCTTCCAGTCAACTTCCTACGGCAAAGTTCTCGTCCTAGATGG
AGTGATTCAAGCGACGGAGCGCGATGAAATGGCCTACCAAGAAATGATTG
TTCATATGCCTCTGTTCGCCCACCCGAACCCGCGCAAGGTCCTGATAATC
GGCGGCGGAGACGGAGGCGTGTTGAGGGAAGTGGCGAAGCATCCGTCGGT
AGAGGTAATTCACATGTGCGAAATTGACAAGATGGTCATTGACGTGAGCA
AAGAGTTTATGGGCGACACCCTGGCGACGTCCTATGACGACCCGCGATTG
ACACTGGTAAGTGCGTGGGTAGAGAGGAAGGGACGGAGGGAGAGACAGAC
GGAGGGATGGGAAGAGGGGAAGGAGTCCTGCGCAGGACACTTACTTCAAT
GGAACGTCTGCATTTTGAAAAGTACGCACTTGTTGAGAGACACACATTCT
CTCTCGCTTTCATGTTCGATAGGTGGTGGATGATGCAGCTAAATTTGTGA
CGAAGGAAGGCCATGAAACGTATGACTGTATCGTCGTCGACTCCTCCGAT
CCAGTGGGTACGTACGGAACGTCAAAAAGGACCCTTATTCCTCTCTCGTT
TCAATCACAAGCCAAACTGCTAACTAGCCTTCATTTTGAAATCAAATTTA
CAGGCCCCGCCGAGGCTTTGTTCGAGCCCGCCTTCTTCCGTTCCCTCCAT
CAAGCCCTCAACCCCAACGGGATCATCTGCACACAGGCCGAATGCCAATG
GCTGCACCTGGATTTCATCGCCAAGGTCTACAAATCCTGCTGCGACATTT
TCCCCCAAGTTGAATATGCTTATACATCCATCCCTACTTACCCCTCGGGG
CAAATTGGCTTCATGCTCTTGTCCAACAGCACCAGCAGCGGAGAAGCTCA
GGCACCTTTGCGGACCCCGGCCCGTACGCCCTCGTCGGACGTACAAGCGA
AGCTGAGGTTTTACAATCCGGCCTTACACACAGCTGCATTTGCCTTGCCC
GAATTTGCCCGGCGCAAATTGGAGGAGGCCCGGGGGGGGAAGTAAAAAAG
AGGGGATCGGGCAGAGGGGAGGTTGTAAGAGGGCCTCAGGATTAGGGTTG
CGCGCTGCATGTACGCATGGATTGACTCATGAAATGGAAACAAGACAAAG
AAAAGATAATACTGACATGAAACGTCAAGCTCTAGGAGGATGCATGGCTT
GTGTGTCGAAGCGTAAAAAAAAGGAGCATGGGCCCGTCGATTCTGA

Coding sequence (CDS) from alignment at scaffold_1:288664..290209-

>mRNA_1329 ID=mRNA_1329|Name=jgi.p|Nanoce1779_2|571753|organism=Nannochloropsis oceanica|type=CDS|length=3732bp|location=Sequence derived from alignment at scaffold_1:288664..290209- (Nannochloropsis oceanica)
GCCCCGCCGAGGCTTTGTTCGAGCCCGCCTTCTTCCGTTCCCTCCATCAA
GCCCTCAACCCCAACGGGATCATCTGCACACAGGCCGAATGCCAATGGCT
GCACCTGGATTTCATCGCCAAGGTCTACAAATCCTGCTGCGACATTTTCC
CCCAAGTTGAATATGCTTATACATCCATCCCTACTTACCCCTCGGGGCAA
ATTGGCTTCATGCTCTTGTCCAACAGCACCAGCAGCGGAGAAGCTCAGGC
ACCTTTGCGGACCCCGGCCCGTACGCCCTCGTCGGACGTACAAGCGAAGC
TGAGGTTTTACAATCCGGCCTTACACACAGCTGCATTTGCCTTGCCCGAA
TTTGCCCGGCGCAAATTGGAGGAGGCCCGGGGGGGGAAGTAAGTGGTGGA
TGATGCAGCTAAATTTGTGACGAAGGAAGGCCATGAAACGTATGACTGTA
TCGTCGTCGACTCCTCCGATCCAGTGGGCCAACGCTTTTCCCTTCAAGTG
GAAAAGGTCCTCTTCCATGCCCGTTCCGACTTCCAAGACGTCCTCCTCTT
CCAGTCAACTTCCTACGGCAAAGTTCTCGTCCTAGATGGAGTGATTCAAG
CGACGGAGCGCGATGAAATGGCCTACCAAGAAATGATTGTTCATATGCCT
CTGTTCGCCCACCCGAACCCGCGCAAGGTCCTGATAATCGGCGGCGGAGA
CGGAGGCGTGTTGAGGGAAGTGGCGAAGCATCCGTCGGTAGAGGTAATTC
ACATGTGCGAAATTGACAAGATGGTCATTGACGTGAGCAAAGAGTTTATG
GGCGACACCCTGGCGACGTCCTATGACGACCCGCGATTGACACTGATGGC
GAACGACGGCAGCGACAAAAAGGTGGAGCTTCTGGACCTGATCAAGAAAG
GCTGGTTCGAAGAGACGCAGAGCTTTTGGTCAGGCCCCGCCGAGGCTTTG
TTCGAGCCCGCCTTCTTCCGTTCCCTCCATCAAGCCCTCAACCCCAACGG
GATCATCTGCACACAGGCCGAATGCCAATGGCTGCACCTGGATTTCATCG
CCAAGGTCTACAAATCCTGCTGCGACATTTTCCCCCAAGTTGAATATGCT
TATACATCCATCCCTACTTACCCCTCGGGGCAAATTGGCTTCATGCTCTT
GTCCAACAGCACCAGCAGCGGAGAAGCTCAGGCACCTTTGCGGACCCCGG
CCCGTACGCCCTCGTCGGACGTACAAGCGAAGCTGAGGTTTTACAATCCG
GCCTTACACACAGCTGCATTTGCCTTGCCCGAATTTGCCCGGCGCAAATT
GGAGGAGGCCCGGGGGGGGAAGTAAGTGGTGGATGATGCAGCTAAATTTG
TGACGAAGGAAGGCCATGAAACGTATGACTGTATCGTCGTCGACTCCTCC
GATCCAGTGGGCCAACGCTTTTCCCTTCAAGTGGAAAAGGTCCTCTTCCA
TGCCCGTTCCGACTTCCAAGACGTCCTCCTCTTCCAGTCAACTTCCTACG
GCAAAGTTCTCGTCCTAGATGGAGTGATTCAAGCGACGGAGCGCGATGAA
ATGGCCTACCAAGAAATGATTGTTCATATGCCTCTGTTCGCCCACCCGAA
CCCGCGCAAGGTCCTGATAATCGGCGGCGGAGACGGAGGCGTGTTGAGGG
AAGTGGCGAAGCATCCGTCGGTAGAGGTAATTCACATGTGCGAAATTGAC
AAGATGGTCATTGACGTGAGCAAAGAGTTTATGGGCGACACCCTGGCGAC
GTCCTATGACGACCCGCGATTGACACTGATGGCGAACGACGGCAGCGACA
AAAAGGTGGAGCTTCTGGACCTGATCAAGAAAGGCTGGTTCGAAGAGACG
CAGAGCTTTTGGTCAGGCCCCGCCGAGGCTTTGTTCGAGCCCGCCTTCTT
CCGTTCCCTCCATCAAGCCCTCAACCCCAACGGGATCATCTGCACACAGG
CCGAATGCCAATGGCTGCACCTGGATTTCATCGCCAAGGTCTACAAATCC
TGCTGCGACATTTTCCCCCAAGTTGAATATGCTTATACATCCATCCCTAC
TTACCCCTCGGGGCAAATTGGCTTCATGCTCTTGTCCAACAGCACCAGCA
GCGGAGAAGCTCAGGCACCTTTGCGGACCCCGGCCCGTACGCCCTCGTCG
GACGTACAAGCGAAGCTGAGGTTTTACAATCCGGCCTTACACACAGCTGC
ATTTGCCTTGCCCGAATTTGCCCGGCGCAAATTGGAGGAGGCCCGGGGGG
GGAAGTAAGTGGTGGATGATGCAGCTAAATTTGTGACGAAGGAAGGCCAT
GAAACGTATGACTGTATCGTCGTCGACTCCTCCGATCCAGTGGGCCAACG
CTTTTCCCTTCAAGTGGAAAAGGTCCTCTTCCATGCCCGTTCCGACTTCC
AAGACGTCCTCCTCTTCCAGTCAACTTCCTACGGCAAAGTTCTCGTCCTA
GATGGAGTGATTCAAGCGACGGAGCGCGATGAAATGGCCTACCAAGAAAT
GATTGTTCATATGCCTCTGTTCGCCCACCCGAACCCGCGCAAGGTCCTGA
TAATCGGCGGCGGAGACGGAGGCGTGTTGAGGGAAGTGGCGAAGCATCCG
TCGGTAGAGGTAATTCACATGTGCGAAATTGACAAGATGGTCATTGACGT
GAGCAAAGAGTTTATGGGCGACACCCTGGCGACGTCCTATGACGACCCGC
GATTGACACTGATGGCGAACGACGGCAGCGACAAAAAGGTGGAGCTTCTG
GACCTGATCAAGAAAGGCTGGTTCGAAGAGACGCAGAGCTTTTGGTCAGG
CCCCGCCGAGGCTTTGTTCGAGCCCGCCTTCTTCCGTTCCCTCCATCAAG
CCCTCAACCCCAACGGGATCATCTGCACACAGGCCGAATGCCAATGGCTG
CACCTGGATTTCATCGCCAAGGTCTACAAATCCTGCTGCGACATTTTCCC
CCAAGTTGAATATGCTTATACATCCATCCCTACTTACCCCTCGGGGCAAA
TTGGCTTCATGCTCTTGTCCAACAGCACCAGCAGCGGAGAAGCTCAGGCA
CCTTTGCGGACCCCGGCCCGTACGCCCTCGTCGGACGTACAAGCGAAGCT
GAGGTTTTACAATCCGGCCTTACACACAGCTGCATTTGCCTTGCCCGAAT
TTGCCCGGCGCAAATTGGAGGAGGCCCGGGGGGGGAAGTAAGTGGTGGAT
GATGCAGCTAAATTTGTGACGAAGGAAGGCCATGAAACGTATGACTGTAT
CGTCGTCGACTCCTCCGATCCAGTGGGCCAACGCTTTTCCCTTCAAGTGG
AAAAGGTCCTCTTCCATGCCCGTTCCGACTTCCAAGACGTCCTCCTCTTC
CAGTCAACTTCCTACGGCAAAGTTCTCGTCCTAGATGGAGTGATTCAAGC
GACGGAGCGCGATGAAATGGCCTACCAAGAAATGATTGTTCATATGCCTC
TGTTCGCCCACCCGAACCCGCGCAAGGTCCTGATAATCGGCGGCGGAGAC
GGAGGCGTGTTGAGGGAAGTGGCGAAGCATCCGTCGGTAGAGGTAATTCA
CATGTGCGAAATTGACAAGATGGTCATTGACGTGAGCAAAGAGTTTATGG
GCGACACCCTGGCGACGTCCTATGACGACCCGCGATTGACACTGATGGCG
AACGACGGCAGCGACAAAAAGGTGGAGCTTCTGGACCTGATCAAGAAAGG
CTGGTTCGAAGAGACGCAGAGCTTTTGGTCAG

Synonyms

Publications