jgi.p|Nanoce1779_2|571748, mRNA_1327 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571748
Unique NamemRNA_1327
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1426
Alignment locationscaffold_1:284195..285620 +

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Properties
Property NameValue
TranscriptId571834
TrackFilteredModels2
ProteinId571748
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:284195..285620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571748gene_1327Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571748mRNA_1327-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1327CDS_1327Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1327 ID=mRNA_1327|Name=jgi.p|Nanoce1779_2|571748|organism=Nannochloropsis oceanica|type=mRNA|length=1426bp
AGGCAGGATAGCGCTAGAGACGTCTTCGGTAGGAATGCGTGGGTGCGGTA
GTTGGAAATGCCATCAGTATGCCTTCAGTCTGCTTCTCCCACTCATGCAT
CTCGCCTCAGCCTCAGTCCACACCTGCAATCCTGCCTTCGTCCTCACCAC
CACCTCATTCGCTGCCACCACTACCTTGAGAATACATGGCAGAATTCCTA
CCACCAGAACATTTCTGCGGACGTCTGTGGTGGTCCATGACACGCGCCGC
AAGAGGAAGCTGCACTACGAAGTGCCAAAACCCCAGAGTGAGGATGACTT
CGACAATTGGGAGTTTGGGATAAATGCAGGATGGGCAAAAGAGCATGCGG
GCCGTAAGCCGATGCCAAAGAGACGCGAAGGTGGCGAACAATATGGAGAA
GAAGGAAGAGAGAATGGCGACGGGGAGGGGGCTGACAGTCTCGTCAAAGA
TGTGGCAGCCGCGACCAAATGTCTGTCCGGCTTCTGCACCGACGCCCGCT
TGGAACGCCTGAGGGACATTGTGAATAAACGCACGTGCTCGATTCAATTT
GTCTTTGAGAACGTAGCAAATCCTAATAACCTGTGGGCATGTCTTAGGTC
ACTCGATGCGTTTGGCGTGCAATACGCCCATGTCATCGTCGATGCGGCGC
ATTATCGCAAGCCCCACCGACTAGCCCAAGCCAAAAGCGCGGTCGGCTCT
CAAAAGTGGCTCACCGTCACGGAGCATTACAGCGCTTCAAATTGCGTCTC
AGCGCTGAAAGCAAAAGGTTATTTGGTCTTAGCCAGTGACTTGAAGCCTG
GTACTTGCCCTACACCTATCCAAGACGTGGAGTGGGCAGCACGAAAAATA
GCGGTTGTGATGGGGAATGAAGAGAGGGGAATTACAGAGGAGATGCGATC
TTTGTGTGATGGGACATTCCAGATTCCTATGATGGGTTTTGCAGAGTCAT
TTAATTTGAGCGTGGGCACGGCTGTAACGCTGGCTTTTCTCAGTTCCTTG
GGAGGCCTCAAGCACGGGGATCTGCCGCAGGAGGAGAGAGAGCGGTTGGT
GTTAAGGTGGCTAGTGAAATCGGTGCCGATGGGCACGGCGATATTGAAGA
GGGAGGGTTTATTGGTGGAGGATGAACGGGTGGTGCCGGCCTCGGACACC
GTGTTGGGGTTTAGCCTGTGGGGGAATAGAAGCGGGAGGTAGCAAGGGAG
GGGAAAGAGGAAGGGTGTGTGAAGATGTCGTATACCTTCGACTCGTTTTG
CAGGGATGCGAATAAAAAGAGTAGAACGACGACGAAACGAAGATTTAAAT
GACGGGAAGCGGTCCGAGCGATTGAAATAAATGTACAAAGATTAGTTAGC
GTTAGGGATGCAGGAAATGAACTTATGGAGAGCGAATGATGGGAATGACA
GAAGATGAACGAACAAAGGTGGGGCA
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protein sequence of jgi.p|Nanoce1779_2|571748

>mRNA_1327-protein ID=mRNA_1327-protein|Name=jgi.p|Nanoce1779_2|571748|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MRGCGSWKCHQYAFSLLLPLMHLASASVHTCNPAFVLTTTSFAATTTLRI
HGRIPTTRTFLRTSVVVHDTRRKRKLHYEVPKPQSEDDFDNWEFGINAGW
AKEHAGRKPMPKRREGGEQYGEEGRENGDGEGADSLVKDVAAATKCLSGF
CTDARLERLRDIVNKRTCSIQFVFENVANPNNLWACLRSLDAFGVQYAHV
IVDAAHYRKPHRLAQAKSAVGSQKWLTVTEHYSASNCVSALKAKGYLVLA
SDLKPGTCPTPIQDVEWAARKIAVVMGNEERGITEEMRSLCDGTFQIPMM
GFAESFNLSVGTAVTLAFLSSLGGLKHGDLPQEERERLVLRWLVKSVPMG
TAILKREGLLVEDERVVPASDTVLGFSLWGNRSGR*
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mRNA from alignment at scaffold_1:284195..285620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1327 ID=mRNA_1327|Name=jgi.p|Nanoce1779_2|571748|organism=Nannochloropsis oceanica|type=mRNA|length=1426bp|location=Sequence derived from alignment at scaffold_1:284195..285620+ (Nannochloropsis oceanica)
AGGCAGGATAGCGCTAGAGACGTCTTCGGTAGGAATGCGTGGGTGCGGTA
GTTGGAAATGCCATCAGTATGCCTTCAGTCTGCTTCTCCCACTCATGCAT
CTCGCCTCAGCCTCAGTCCACACCTGCAATCCTGCCTTCGTCCTCACCAC
CACCTCATTCGCTGCCACCACTACCTTGAGAATACATGGCAGAATTCCTA
CCACCAGAACATTTCTGCGGACGTCTGTGGTGGTCCATGACACGCGCCGC
AAGAGGAAGCTGCACTACGAAGTGCCAAAACCCCAGAGTGAGGATGACTT
CGACAATTGGGAGTTTGGGATAAATGCAGGATGGGCAAAAGAGCATGCGG
GCCGTAAGCCGATGCCAAAGAGACGCGAAGGTGGCGAACAATATGGAGAA
GAAGGAAGAGAGAATGGCGACGGGGAGGGGGCTGACAGTCTCGTCAAAGA
TGTGGCAGCCGCGACCAAATGTCTGTCCGGCTTCTGCACCGACGCCCGCT
TGGAACGCCTGAGGGACATTGTGAATAAACGCACGTGCTCGATTCAATTT
GTCTTTGAGAACGTAGCAAATCCTAATAACCTGTGGGCATGTCTTAGGTC
ACTCGATGCGTTTGGCGTGCAATACGCCCATGTCATCGTCGATGCGGCGC
ATTATCGCAAGCCCCACCGACTAGCCCAAGCCAAAAGCGCGGTCGGCTCT
CAAAAGTGGCTCACCGTCACGGAGCATTACAGCGCTTCAAATTGCGTCTC
AGCGCTGAAAGCAAAAGGTTATTTGGTCTTAGCCAGTGACTTGAAGCCTG
GTACTTGCCCTACACCTATCCAAGACGTGGAGTGGGCAGCACGAAAAATA
GCGGTTGTGATGGGGAATGAAGAGAGGGGAATTACAGAGGAGATGCGATC
TTTGTGTGATGGGACATTCCAGATTCCTATGATGGGTTTTGCAGAGTCAT
TTAATTTGAGCGTGGGCACGGCTGTAACGCTGGCTTTTCTCAGTTCCTTG
GGAGGCCTCAAGCACGGGGATCTGCCGCAGGAGGAGAGAGAGCGGTTGGT
GTTAAGGTGGCTAGTGAAATCGGTGCCGATGGGCACGGCGATATTGAAGA
GGGAGGGTTTATTGGTGGAGGATGAACGGGTGGTGCCGGCCTCGGACACC
GTGTTGGGGTTTAGCCTGTGGGGGAATAGAAGCGGGAGGTAGCAAGGGAG
GGGAAAGAGGAAGGGTGTGTGAAGATGTCGTATACCTTCGACTCGTTTTG
CAGGGATGCGAATAAAAAGAGTAGAACGACGACGAAACGAAGATTTAAAT
GACGGGAAGCGGTCCGAGCGATTGAAATAAATGTACAAAGATTAGTTAGC
GTTAGGGATGCAGGAAATGAACTTATGGAGAGCGAATGATGGGAATGACA
GAAGATGAACGAACAAAGGTGGGGCA
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Coding sequence (CDS) from alignment at scaffold_1:284195..285620+

>mRNA_1327 ID=mRNA_1327|Name=jgi.p|Nanoce1779_2|571748|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_1:284195..285620+ (Nannochloropsis oceanica)
ATGCGTGGGTGCGGTAGTTGGAAATGCCATCAGTATGCCTTCAGTCTGCT
TCTCCCACTCATGCATCTCGCCTCAGCCTCAGTCCACACCTGCAATCCTG
CCTTCGTCCTCACCACCACCTCATTCGCTGCCACCACTACCTTGAGAATA
CATGGCAGAATTCCTACCACCAGAACATTTCTGCGGACGTCTGTGGTGGT
CCATGACACGCGCCGCAAGAGGAAGCTGCACTACGAAGTGCCAAAACCCC
AGAGTGAGGATGACTTCGACAATTGGGAGTTTGGGATAAATGCAGGATGG
GCAAAAGAGCATGCGGGCCGTAAGCCGATGCCAAAGAGACGCGAAGGTGG
CGAACAATATGGAGAAGAAGGAAGAGAGAATGGCGACGGGGAGGGGGCTG
ACAGTCTCGTCAAAGATGTGGCAGCCGCGACCAAATGTCTGTCCGGCTTC
TGCACCGACGCCCGCTTGGAACGCCTGAGGGACATTGTGAATAAACGCAC
GTGCTCGATTCAATTTGTCTTTGAGAACGTAGCAAATCCTAATAACCTGT
GGGCATGTCTTAGGTCACTCGATGCGTTTGGCGTGCAATACGCCCATGTC
ATCGTCGATGCGGCGCATTATCGCAAGCCCCACCGACTAGCCCAAGCCAA
AAGCGCGGTCGGCTCTCAAAAGTGGCTCACCGTCACGGAGCATTACAGCG
CTTCAAATTGCGTCTCAGCGCTGAAAGCAAAAGGTTATTTGGTCTTAGCC
AGTGACTTGAAGCCTGGTACTTGCCCTACACCTATCCAAGACGTGGAGTG
GGCAGCACGAAAAATAGCGGTTGTGATGGGGAATGAAGAGAGGGGAATTA
CAGAGGAGATGCGATCTTTGTGTGATGGGACATTCCAGATTCCTATGATG
GGTTTTGCAGAGTCATTTAATTTGAGCGTGGGCACGGCTGTAACGCTGGC
TTTTCTCAGTTCCTTGGGAGGCCTCAAGCACGGGGATCTGCCGCAGGAGG
AGAGAGAGCGGTTGGTGTTAAGGTGGCTAGTGAAATCGGTGCCGATGGGC
ACGGCGATATTGAAGAGGGAGGGTTTATTGGTGGAGGATGAACGGGTGGT
GCCGGCCTCGGACACCGTGTTGGGGTTTAGCCTGTGGGGGAATAGAAGCG
GGAGGTAG
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Synonyms
Publications