jgi.p|Nanoce1779_2|571741, mRNA_1325 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571741
Unique NamemRNA_1325
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length874
Alignment locationscaffold_1:280438..281311 +

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Properties
Property NameValue
TranscriptId571827
TrackFilteredModels2
ProteinId571741
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:280438..281311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571741gene_1325Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571741mRNA_1325-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1325CDS_1325Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1325 ID=mRNA_1325|Name=jgi.p|Nanoce1779_2|571741|organism=Nannochloropsis oceanica|type=mRNA|length=874bp
GAATGGAATAAGGAATGATGACGTTAAGTAGACCTGCAGTCTCCCTTGGG
CTCGCTGGTAGAGAACCGGTGTCAAGCAAGCAGCAGCGTTGTAGTGGCAA
TGTTCTTCTTCGTTCGTCCCGGCCTTGTGATGTCTACGAAGGGTGGGTAA
ATTTCCGAGCCGAGCCGATACTTTCGACTGCCCACCCTTTCTCTTCACGA
CATCACCCCCTTCCTCCCACAGCGTTGCGAGGATGGTGGCATTGGACTTG
AACCTCGCCCTAGTAATTCATGGGGGCTTCGAAGGCATCGTTGGCCTGCT
TTTGTTGGTCACGCCCCAATACGTCTTTCCATACATTGCCCGGCGAGCCT
CTTACAACAACAGTGAACGTTCCCTATTGCGATGGTTCGCCTTCAGTATT
ATCGTTCAAGCCATGGTGGCTTTTGCAGCCATCGTGAAGCTGGATGCTAG
GGCCAAGCGTCTCATTCTCTCCGCCTTTTTGATGTACCACCTTGTCATTG
TCGCTGACGCTTCGTATGGGTACTATTTAGAGGGAACAATGGATGAGGCG
GCCACGGGGCTGCATGCCATTATGGTCTTTGTGGTAGGCTTCCTCCTGGC
GGCGGGGGAGAAACGTGCCCGGTGGTCACCAAGAAAGACGCGATGAAGGA
AGAGAGGGAAGCAGCAAGCAAATGGAAAAACGGACAGAGTTAGTGTCTCG
GGAAATATTAAAGGTAGGCAAAGCCTTGCAAATTCGGCAGGCCAAGAACA
GACCACAGGATGCAGTGATAACACGAGGAGAAGTGCTTGGTACACGTTAA
GCTTTGGAAAAGGGTGTGTCACAGGGATAAATGAGAGCATGTATACCAAA
AAAAATAAAGTTGTTTTGATCGAA
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protein sequence of jgi.p|Nanoce1779_2|571741

>mRNA_1325-protein ID=mRNA_1325-protein|Name=jgi.p|Nanoce1779_2|571741|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MVALDLNLALVIHGGFEGIVGLLLLVTPQYVFPYIARRASYNNSERSLLR
WFAFSIIVQAMVAFAAIVKLDARAKRLILSAFLMYHLVIVADASYGYYLE
GTMDEAATGLHAIMVFVVGFLLAAGEKRARWSPRKTR*
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mRNA from alignment at scaffold_1:280438..281311+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1325 ID=mRNA_1325|Name=jgi.p|Nanoce1779_2|571741|organism=Nannochloropsis oceanica|type=mRNA|length=874bp|location=Sequence derived from alignment at scaffold_1:280438..281311+ (Nannochloropsis oceanica)
GAATGGAATAAGGAATGATGACGTTAAGTAGACCTGCAGTCTCCCTTGGG
CTCGCTGGTAGAGAACCGGTGTCAAGCAAGCAGCAGCGTTGTAGTGGCAA
TGTTCTTCTTCGTTCGTCCCGGCCTTGTGATGTCTACGAAGGGTGGGTAA
ATTTCCGAGCCGAGCCGATACTTTCGACTGCCCACCCTTTCTCTTCACGA
CATCACCCCCTTCCTCCCACAGCGTTGCGAGGATGGTGGCATTGGACTTG
AACCTCGCCCTAGTAATTCATGGGGGCTTCGAAGGCATCGTTGGCCTGCT
TTTGTTGGTCACGCCCCAATACGTCTTTCCATACATTGCCCGGCGAGCCT
CTTACAACAACAGTGAACGTTCCCTATTGCGATGGTTCGCCTTCAGTATT
ATCGTTCAAGCCATGGTGGCTTTTGCAGCCATCGTGAAGCTGGATGCTAG
GGCCAAGCGTCTCATTCTCTCCGCCTTTTTGATGTACCACCTTGTCATTG
TCGCTGACGCTTCGTATGGGTACTATTTAGAGGGAACAATGGATGAGGCG
GCCACGGGGCTGCATGCCATTATGGTCTTTGTGGTAGGCTTCCTCCTGGC
GGCGGGGGAGAAACGTGCCCGGTGGTCACCAAGAAAGACGCGATGAAGGA
AGAGAGGGAAGCAGCAAGCAAATGGAAAAACGGACAGAGTTAGTGTCTCG
GGAAATATTAAAGGTAGGCAAAGCCTTGCAAATTCGGCAGGCCAAGAACA
GACCACAGGATGCAGTGATAACACGAGGAGAAGTGCTTGGTACACGTTAA
GCTTTGGAAAAGGGTGTGTCACAGGGATAAATGAGAGCATGTATACCAAA
AAAAATAAAGTTGTTTTGATCGAA
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Coding sequence (CDS) from alignment at scaffold_1:280438..281311+

>mRNA_1325 ID=mRNA_1325|Name=jgi.p|Nanoce1779_2|571741|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_1:280438..281311+ (Nannochloropsis oceanica)
ATGGTGGCATTGGACTTGAACCTCGCCCTAGTAATTCATGGGGGCTTCGA
AGGCATCGTTGGCCTGCTTTTGTTGGTCACGCCCCAATACGTCTTTCCAT
ACATTGCCCGGCGAGCCTCTTACAACAACAGTGAACGTTCCCTATTGCGA
TGGTTCGCCTTCAGTATTATCGTTCAAGCCATGGTGGCTTTTGCAGCCAT
CGTGAAGCTGGATGCTAGGGCCAAGCGTCTCATTCTCTCCGCCTTTTTGA
TGTACCACCTTGTCATTGTCGCTGACGCTTCGTATGGGTACTATTTAGAG
GGAACAATGGATGAGGCGGCCACGGGGCTGCATGCCATTATGGTCTTTGT
GGTAGGCTTCCTCCTGGCGGCGGGGGAGAAACGTGCCCGGTGGTCACCAA
GAAAGACGCGATGA
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Synonyms
Publications