jgi.p|Nanoce1779_2|571734, mRNA_1323 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571734
Unique NamemRNA_1323
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1275
Alignment locationscaffold_1:274877..276151 +

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Properties
Property NameValue
TranscriptId571820
TrackFilteredModels2
ProteinId571734
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:274877..276151 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571734gene_1323Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571734mRNA_1323-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1323CDS_1323Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1323 ID=mRNA_1323|Name=jgi.p|Nanoce1779_2|571734|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp
ACAGCCCTTGAATCATGCGCAGCACGCTGGGCTTAATGATGCTGCTTCTT
CCTGCCTTGGCCTCGGCCTTCTCCGTGCCGCGCCTCATGCGCGCTGCCAC
CAACCCCCTGGCCATGGCCAACGCTGCTGCTGCCCGCCGCGGGCGCGTCT
CCATGATGGCCACTGTCGCTCCACCTGGCGCGGCATCAGTCAAGCGCTTG
AGCTTTCCGCAAGACGAATTGCTTAAGGACATTGATGTGTTTATCTTTGA
CTGCGACGGCGTGATTTGGCGTGGAGACTCCTTGATCGACAAGGTGCCCT
CGGTCCTGGAGAAGCTCCGGGCCATGGGGAAGCGCATGTTTTTCGTGACC
AACAACTCCACCAAGAGCCGCAAGGGCTACAAGAGCAAGTTTTCTTCGCT
GGGACTGGACGTTAAAGATGAGGAAATTTTCTCGTCTTCATTTGCGGCGG
CCGCATACTTGGAGCAGAAGAATTTCAAGGCGACGGGGAAGAAGGTCTAC
GTCATAGGCGAGGTCGGAATTGGGGAGGAGCTGGATTTGATCGGCGTGCC
ACACATCGGTGGGCCTGCAGATAAAGGCAAGACGATTGAGTTGACTCCTG
GGTATGCTTTGGAGATCGACCATGATGTGGGCGCGGTGGTGGTGGGTTTT
GATCGTCACTTTAATTACCACAAGATTCAGTATGCCCAGCTATGCATTAA
TGAGAATGGGGCGGAGTTCATCGCCACGAATATGGACGCAGTAACTCATT
TGACGGATGCGCAGGAGTGGGCTGGCGCAGGATCGATGGTGGGGTGCATC
AAGGGTTGTACGGGGAAGGAGCCCACGTTGGTTGGGAAGCCTAGTCCGTT
AATGATTGATTACATCGTCTATAAGTACGAGATTCCCAAGGCAAAGATTT
GCATGGTCGGGGATCGATTGGACACGGATATTCTGTTCGGGAAGGATAAT
GGACTGAAGACGGTATTGACCCTGAGTGGGGTTACCTCGGAAGAGAAGTT
GCTGGGTGCGGCGAATAAAATCCATCCTGATTATTACGTGTCTTCGATTG
CGGATTTCTTTCCGTAGAGGGGAAGAAGGATGGGATAGGGATAGGGTAGT
GGTGGTGTGATTGTAAGTTGTGTCTTGGTGTATGTGTGGTATATGTGGTG
GTTGTGGTGGTGATTGAAAGGGATCGAGAAAGCGAGAGGGGTTGTCTACA
GTATTCTCAATGAGGCTGCAGGGGAAGGAGGAAGAGAGTGGGGAAAGAAA
CGACTGCGAAAAAAACGGCGGCACA
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protein sequence of jgi.p|Nanoce1779_2|571734

>mRNA_1323-protein ID=mRNA_1323-protein|Name=jgi.p|Nanoce1779_2|571734|organism=Nannochloropsis oceanica|type=polypeptide|length=351bp
MRSTLGLMMLLLPALASAFSVPRLMRAATNPLAMANAAAARRGRVSMMAT
VAPPGAASVKRLSFPQDELLKDIDVFIFDCDGVIWRGDSLIDKVPSVLEK
LRAMGKRMFFVTNNSTKSRKGYKSKFSSLGLDVKDEEIFSSSFAAAAYLE
QKNFKATGKKVYVIGEVGIGEELDLIGVPHIGGPADKGKTIELTPGYALE
IDHDVGAVVVGFDRHFNYHKIQYAQLCINENGAEFIATNMDAVTHLTDAQ
EWAGAGSMVGCIKGCTGKEPTLVGKPSPLMIDYIVYKYEIPKAKICMVGD
RLDTDILFGKDNGLKTVLTLSGVTSEEKLLGAANKIHPDYYVSSIADFFP
*
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mRNA from alignment at scaffold_1:274877..276151+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1323 ID=mRNA_1323|Name=jgi.p|Nanoce1779_2|571734|organism=Nannochloropsis oceanica|type=mRNA|length=1275bp|location=Sequence derived from alignment at scaffold_1:274877..276151+ (Nannochloropsis oceanica)
ACAGCCCTTGAATCATGCGCAGCACGCTGGGCTTAATGATGCTGCTTCTT
CCTGCCTTGGCCTCGGCCTTCTCCGTGCCGCGCCTCATGCGCGCTGCCAC
CAACCCCCTGGCCATGGCCAACGCTGCTGCTGCCCGCCGCGGGCGCGTCT
CCATGATGGCCACTGTCGCTCCACCTGGCGCGGCATCAGTCAAGCGCTTG
AGCTTTCCGCAAGACGAATTGCTTAAGGACATTGATGTGTTTATCTTTGA
CTGCGACGGCGTGATTTGGCGTGGAGACTCCTTGATCGACAAGGTGCCCT
CGGTCCTGGAGAAGCTCCGGGCCATGGGGAAGCGCATGTTTTTCGTGACC
AACAACTCCACCAAGAGCCGCAAGGGCTACAAGAGCAAGTTTTCTTCGCT
GGGACTGGACGTTAAAGATGAGGAAATTTTCTCGTCTTCATTTGCGGCGG
CCGCATACTTGGAGCAGAAGAATTTCAAGGCGACGGGGAAGAAGGTCTAC
GTCATAGGCGAGGTCGGAATTGGGGAGGAGCTGGATTTGATCGGCGTGCC
ACACATCGGTGGGCCTGCAGATAAAGGCAAGACGATTGAGTTGACTCCTG
GGTATGCTTTGGAGATCGACCATGATGTGGGCGCGGTGGTGGTGGGTTTT
GATCGTCACTTTAATTACCACAAGATTCAGTATGCCCAGCTATGCATTAA
TGAGAATGGGGCGGAGTTCATCGCCACGAATATGGACGCAGTAACTCATT
TGACGGATGCGCAGGAGTGGGCTGGCGCAGGATCGATGGTGGGGTGCATC
AAGGGTTGTACGGGGAAGGAGCCCACGTTGGTTGGGAAGCCTAGTCCGTT
AATGATTGATTACATCGTCTATAAGTACGAGATTCCCAAGGCAAAGATTT
GCATGGTCGGGGATCGATTGGACACGGATATTCTGTTCGGGAAGGATAAT
GGACTGAAGACGGTATTGACCCTGAGTGGGGTTACCTCGGAAGAGAAGTT
GCTGGGTGCGGCGAATAAAATCCATCCTGATTATTACGTGTCTTCGATTG
CGGATTTCTTTCCGTAGAGGGGAAGAAGGATGGGATAGGGATAGGGTAGT
GGTGGTGTGATTGTAAGTTGTGTCTTGGTGTATGTGTGGTATATGTGGTG
GTTGTGGTGGTGATTGAAAGGGATCGAGAAAGCGAGAGGGGTTGTCTACA
GTATTCTCAATGAGGCTGCAGGGGAAGGAGGAAGAGAGTGGGGAAAGAAA
CGACTGCGAAAAAAACGGCGGCACA
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Coding sequence (CDS) from alignment at scaffold_1:274877..276151+

>mRNA_1323 ID=mRNA_1323|Name=jgi.p|Nanoce1779_2|571734|organism=Nannochloropsis oceanica|type=CDS|length=1053bp|location=Sequence derived from alignment at scaffold_1:274877..276151+ (Nannochloropsis oceanica)
ATGCGCAGCACGCTGGGCTTAATGATGCTGCTTCTTCCTGCCTTGGCCTC
GGCCTTCTCCGTGCCGCGCCTCATGCGCGCTGCCACCAACCCCCTGGCCA
TGGCCAACGCTGCTGCTGCCCGCCGCGGGCGCGTCTCCATGATGGCCACT
GTCGCTCCACCTGGCGCGGCATCAGTCAAGCGCTTGAGCTTTCCGCAAGA
CGAATTGCTTAAGGACATTGATGTGTTTATCTTTGACTGCGACGGCGTGA
TTTGGCGTGGAGACTCCTTGATCGACAAGGTGCCCTCGGTCCTGGAGAAG
CTCCGGGCCATGGGGAAGCGCATGTTTTTCGTGACCAACAACTCCACCAA
GAGCCGCAAGGGCTACAAGAGCAAGTTTTCTTCGCTGGGACTGGACGTTA
AAGATGAGGAAATTTTCTCGTCTTCATTTGCGGCGGCCGCATACTTGGAG
CAGAAGAATTTCAAGGCGACGGGGAAGAAGGTCTACGTCATAGGCGAGGT
CGGAATTGGGGAGGAGCTGGATTTGATCGGCGTGCCACACATCGGTGGGC
CTGCAGATAAAGGCAAGACGATTGAGTTGACTCCTGGGTATGCTTTGGAG
ATCGACCATGATGTGGGCGCGGTGGTGGTGGGTTTTGATCGTCACTTTAA
TTACCACAAGATTCAGTATGCCCAGCTATGCATTAATGAGAATGGGGCGG
AGTTCATCGCCACGAATATGGACGCAGTAACTCATTTGACGGATGCGCAG
GAGTGGGCTGGCGCAGGATCGATGGTGGGGTGCATCAAGGGTTGTACGGG
GAAGGAGCCCACGTTGGTTGGGAAGCCTAGTCCGTTAATGATTGATTACA
TCGTCTATAAGTACGAGATTCCCAAGGCAAAGATTTGCATGGTCGGGGAT
CGATTGGACACGGATATTCTGTTCGGGAAGGATAATGGACTGAAGACGGT
ATTGACCCTGAGTGGGGTTACCTCGGAAGAGAAGTTGCTGGGTGCGGCGA
ATAAAATCCATCCTGATTATTACGTGTCTTCGATTGCGGATTTCTTTCCG
TAG
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Synonyms
Publications