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Properties
| Property Name | Value |
|---|
| TranscriptId | 571819 |
| Track | FilteredModels2 |
| ProteinId | 571733 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:272689..274831 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1322 ID=mRNA_1322|Name=jgi.p|Nanoce1779_2|571733|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp
CCAGGCGAGATGGACCACATCTCCTCGAGAGACGGCCCGTGTGGCGAGCC
TGCGGGATTGATTGCGGCAGGGAACAACGGCCCCAACCGACGCAGCCCAA
AAATCCCTATGAGCTTGTCAACAACAAGGCAGCGAGCCAGCAGAGGACGG
TGCACATGCAAATTCTCGCAACAAAGGCACACTTGCATGCATTTGTGCTC
GTGTCCAAGCCCGCAAAATCGCCAAACGTCGTCGCGGCGCGGCCCGCGGG
ACTTCCATTTCGCCCAGCACATGCTTCCGCTTTCATTCTGCTGTGGTGTG
TTTCTGCGTGCGACTGTTGCCCTTGCTACTTATTTTAACCCCATACTCCT
GCCCTTACGCCTCGACAGACCTCTGGCACATGTGCCTGGCGAAAATACTG
AGGCTGGACTTCGTGGGGCTCCCTGTGCTTCCGCCACCACCGCCGCCCTC
TTCGTCAACGCCCGCTCTTAAAGAGACTCACTATTGAAGAATTACAACCG
CATTACAACCCTACCCAAAGCCAACACCCACAGGTACCATCAGTAGCCAC
TGCAGCAATAATAGCACCACCGCGACCAACATGGGTCTATTTGGCAGTGG
GATCATCGAGCAGCAAGAGCAGGCGAAGCTGAAGCAGAAACCGTCTCCGC
TGCGGGAGCTCAAGGGAGGCAATAAAAGCAGCAAGCACAAGGAACCCCTG
ACGCCCTCCAGTAATCTGAGGCCGGCCCGCTCCCCGACCGAGGTAGACTG
GAGCTCTTTTCCCGAGGGCAGCTACACGCGCTTCGGGCATGGCGGGGATT
GGTGGACGCTGATCAAGGGGACGATAGCCATTTTGTTCACGTGGGGAACC
TGGCTGGCCGGCGGCTTGTCTCCCGTTTGGATGACTTGGTTGTTTTGGCA
CGGATACAAAAAGACGTTTTATTCGATCTTGGGCCCTTTGCTCTATCCGC
TTTTGTTGCCAGTGCCGGCCTGGCCTGGATTCGTCCGATTCATTCTAAAC
ATGGCTGGGTATTTTGAGGGCGGTGCAGCGATGTACGTTGAAAACTCCTT
CAAAGGCCGCAACGTGAACGGCCCTATCATGTTGGCCATGCATCCCCACG
GCATCATGCCTCACTCTTTCCTTCTCAACGGTGCCGGGCGGATCCACGCG
CAGAAACCAGAGGTATTCCTCCCTCCACACTATCAAGATATGTCTCTCAA
ATCGACGGGCGTAGCGGAGCCTTTGTTGTTTCGGATTCCGTTTATCTCGG
CGTTTCTATACTTTTTCGGATGTGCCGAACCAGCGTCAAAGGAGATGATG
CACGACATCTTGGGGAGGCAGGTGCCGTTTGGGATTCTGGTTGGTGGCTC
AGAAGAAATTCTCCTCATGGAGTACCAGAAGGAAAACATCTACATCCTGG
AACGCAAAGGCTTCATCAAATACGCCCTCCAACACGGCTACACCATTGCT
ATTGGCTATCTGTTCGGGGAATCCAACCTCTACCACACCATCACCTGGGG
CCGCAAGACCCGCCTCGCTCTCTTCAAAAAATTCAAGATCCCCCTCTTCT
TGGCTTGGGGGCGTTGGTTCTTCCCCTTACTTCCTGAGCGAGCCGCGCCT
TTGAATGCTGTCGTAGGTAACCCGATAGATTTGCCCAGGGTAGCTAACCC
AAGCCAGGCCGACATTGACAAATACCATGCGTTGTACATTGAGAAGTTGA
CAGACTTGTTCGAACGGAATAAGGCGGCCTTCGGGTATTCTGATCGGACG
TTGAATTTCTTTTAGGGA back to topprotein sequence of jgi.p|Nanoce1779_2|571733 >mRNA_1322-protein ID=mRNA_1322-protein|Name=jgi.p|Nanoce1779_2|571733|organism=Nannochloropsis oceanica|type=polypeptide|length=395bp
MGLFGSGIIEQQEQAKLKQKPSPLRELKGGNKSSKHKEPLTPSSNLRPAR
SPTEVDWSSFPEGSYTRFGHGGDWWTLIKGTIAILFTWGTWLAGGLSPVW
MTWLFWHGYKKTFYSILGPLLYPLLLPVPAWPGFVRFILNMAGYFEGGAA
MYVENSFKGRNVNGPIMLAMHPHGIMPHSFLLNGAGRIHAQKPEVFLPPH
YQDMSLKSTGVAEPLLFRIPFISAFLYFFGCAEPASKEMMHDILGRQVPF
GILVGGSEEILLMEYQKENIYILERKGFIKYALQHGYTIAIGYLFGESNL
YHTITWGRKTRLALFKKFKIPLFLAWGRWFFPLLPERAAPLNAVVGNPID
LPRVANPSQADIDKYHALYIEKLTDLFERNKAAFGYSDRTLNFF* back to topmRNA from alignment at scaffold_1:272689..274831- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1322 ID=mRNA_1322|Name=jgi.p|Nanoce1779_2|571733|organism=Nannochloropsis oceanica|type=mRNA|length=2143bp|location=Sequence derived from alignment at scaffold_1:272689..274831- (Nannochloropsis oceanica)
CCAGGCGAGATGGACCACATCTCCTCGAGAGACGGCCCGTGTGGCGAGCC
TGCGGGATTGATTGCGGCAGGGAACAACGGCCCCAACCGACGCAGCCCAA
AAATCCCTATGAGCTTGTCAACAACAAGGCAGCGAGCCAGCAGAGGACGG
TGCACATGCAAATTCTCGCAACAAAGGCACACTTGCATGCATTTGTGCTC
GTGTCCAAGCCCGCAAAATCGCCAAACGTCGTCGCGGCGCGGCCCGCGGG
ACTTCCATTTCGCCCAGCACATGCTTCCGCTTTCATTCTGCTGTGGTGTG
TTTCTGCGTGCGACTGTTGCCCTTGCTACTTATTTTAACCCCATACTCCT
GCCCTTACGCCTCGACAGACCTCTGGCACATGTGCCTGGCGAAAATACTG
AGGCTGGACTTCGTGGGGCTCCCTGTGCTTCCGCCACCACCGCCGCCCTC
TTCGTCAACGCCCGCTCTTAAAGAGACTCACTATTGAAGAATTACAACCG
CATTACAACCCTACCCAAAGCCAACACCCACAGGTACCATCAGTAGCCAC
TGCAGCAATAATAGCACCACCGCGACCAACATGGGTCTATTTGGCAGTGG
GATCATCGAGCAGCAAGAGCAGGCGAAGCTGAAGCAGAAACCGTCTCCGC
TGCGGGAGCTCAAGGGAGGCAATAAAAGCAGCAAGCACAAGGAACCCCTG
ACGCCCTCCAGTAATCTGAGGCCGGCCCGCTCCCCGACCGAGGTAGACTG
GAGCTCTTTTCCCGAGGGCAGCTACACGCGCTTCGGGCATGGCGGGGATT
GGTGGACGCTGATCAAGGGGACGATAGCCATTTTGTTCACGTGGGGAACC
TGGCTGGCCGGCGGCTTGTCTCCCGTTTGGATGACTTGGTTGTTTTGGCA
CGGATACAAAAAGACGTTTTATTCGATCTTGGGCCCTTTGCTCTATCCGC
TTTTGTTGCCAGTGCCGGCCTGGCCTGGATTCGTCCGATTCATTCTAAAC
ATGGCTGGGTATTTTGAGGTATGCGACGGTGTTTGTTAGAATTGATGCTG
TGTGATGAAGCAAGATGAGTAGGGGTGAAGGATGAAAGGGAGTTGAAAAG
ACTATATGCCTTTTTTGAATGGGCAGGGTGATGATTGTGATGGTAGACCT
GTCGTGTCATGCCCGTGCGGAACTTTATGTGAGTGTCTCCGTGCCTCCTC
CTTCTCTCATCCCCCTTCCCTTGTCCCTTTCTTTTCCTCCTCTTTTCTCA
CTGTCACAGGGCGGTGCAGCGATGTACGTTGAAAACTCCTTCAAAGGCCG
CAACGTGAACGGCCCTATCATGTTGGCCATGCATCCCCACGGCATCATGC
CTCACTCTTTCCTTCTCAACGGTGCCGGGCGGATCCACGCGCAGAAACCA
GAGGTATTCCTCCCTCCACACTATCAAGATATGTCTCTCAAATCGACGGG
CGTAGCGGAGCCTTTGTTGTTTCGGATTCCGTTTATCTCGGCGTTTCTAT
ACTTTTTCGGATGTGCCGAACCAGCGTCAAAGGAGATGATGCACGACATC
TTGGGGAGGCAGGTGCCGTTTGGGATTCTGGTACGTGCCTAGAAAAGCAT
GTGTTGTGAGAGGAAGATGGGGAATAAGTTAAGGCTTAGGCGGGCCGTTT
CTTCTTAAGTGTCACGCCTTATTCGCCGCCTTTTCCCTTTCCCCTGCCCC
TCCTCCCCTCCCAGGTTGGTGGCTCAGAAGAAATTCTCCTCATGGAGTAC
CAGAAGGAAAACATCTACATCCTGGAACGCAAAGGCTTCATCAAATACGC
CCTCCAACACGGCTACACCATTGCTATTGGCTATCTGTTCGGGGAATCCA
ACCTCTACCACACCATCACCTGGGGCCGCAAGACCCGCCTCGCTCTCTTC
AAAAAATTCAAGATCCCCCTCTTCTTGGCTTGGGGGCGTTGGTTCTTCCC
CTTACTTCCTGAGCGAGCCGCGCCTTTGAATGCTGTCGTAGGTAACCCGA
TAGATTTGCCCAGGGTAGCTAACCCAAGCCAGGCCGACATTGACAAATAC
CATGCGTTGTACATTGAGAAGTTGACAGACTTGTTCGAACGGAATAAGGC
GGCCTTCGGGTATTCTGATCGGACGTTGAATTTCTTTTAGGGA back to topCoding sequence (CDS) from alignment at scaffold_1:272689..274831- >mRNA_1322 ID=mRNA_1322|Name=jgi.p|Nanoce1779_2|571733|organism=Nannochloropsis oceanica|type=CDS|length=3555bp|location=Sequence derived from alignment at scaffold_1:272689..274831- (Nannochloropsis oceanica)
GTTGGTGGCTCAGAAGAAATTCTCCTCATGGAGTACCAGAAGGAAAACAT
CTACATCCTGGAACGCAAAGGCTTCATCAAATACGCCCTCCAACACGGCT
ACACCATTGCTATTGGCTATCTGTTCGGGGAATCCAACCTCTACCACACC
ATCACCTGGGGCCGCAAGACCCGCCTCGCTCTCTTCAAAAAATTCAAGAT
CCCCCTCTTCTTGGCTTGGGGGCGTTGGTTCTTCCCCTTACTTCCTGAGC
GAGCCGCGCCTTTGAATGCTGTCGTAGGTAACCCGATAGATTTGCCCAGG
GTAGCTAACCCAAGCCAGGCCGACATTGACAAATACCATGCGTTGTACAT
TGAGAAGTTGACAGACTTGTTCGAACGGAATAAGGCGGCCTTCGGGTATT
CTGATCGGACGTTGAATTTCTTTTAGGGCGGTGCAGCGATGTACGTTGAA
AACTCCTTCAAAGGCCGCAACGTGAACGGCCCTATCATGTTGGCCATGCA
TCCCCACGGCATCATGCCTCACTCTTTCCTTCTCAACGGTGCCGGGCGGA
TCCACGCGCAGAAACCAGAGGTATTCCTCCCTCCACACTATCAAGATATG
TCTCTCAAATCGACGGGCGTAGCGGAGCCTTTGTTGTTTCGGATTCCGTT
TATCTCGGCGTTTCTATACTTTTTCGGATGTGCCGAACCAGCGTCAAAGG
AGATGATGCACGACATCTTGGGGAGGCAGGTGCCGTTTGGGATTCTGATG
GGTCTATTTGGCAGTGGGATCATCGAGCAGCAAGAGCAGGCGAAGCTGAA
GCAGAAACCGTCTCCGCTGCGGGAGCTCAAGGGAGGCAATAAAAGCAGCA
AGCACAAGGAACCCCTGACGCCCTCCAGTAATCTGAGGCCGGCCCGCTCC
CCGACCGAGGTAGACTGGAGCTCTTTTCCCGAGGGCAGCTACACGCGCTT
CGGGCATGGCGGGGATTGGTGGACGCTGATCAAGGGGACGATAGCCATTT
TGTTCACGTGGGGAACCTGGCTGGCCGGCGGCTTGTCTCCCGTTTGGATG
ACTTGGTTGTTTTGGCACGGATACAAAAAGACGTTTTATTCGATCTTGGG
CCCTTTGCTCTATCCGCTTTTGTTGCCAGTGCCGGCCTGGCCTGGATTCG
TCCGATTCATTCTAAACATGGCTGGGTATTTTGAGGTTGGTGGCTCAGAA
GAAATTCTCCTCATGGAGTACCAGAAGGAAAACATCTACATCCTGGAACG
CAAAGGCTTCATCAAATACGCCCTCCAACACGGCTACACCATTGCTATTG
GCTATCTGTTCGGGGAATCCAACCTCTACCACACCATCACCTGGGGCCGC
AAGACCCGCCTCGCTCTCTTCAAAAAATTCAAGATCCCCCTCTTCTTGGC
TTGGGGGCGTTGGTTCTTCCCCTTACTTCCTGAGCGAGCCGCGCCTTTGA
ATGCTGTCGTAGGTAACCCGATAGATTTGCCCAGGGTAGCTAACCCAAGC
CAGGCCGACATTGACAAATACCATGCGTTGTACATTGAGAAGTTGACAGA
CTTGTTCGAACGGAATAAGGCGGCCTTCGGGTATTCTGATCGGACGTTGA
ATTTCTTTTAGGGCGGTGCAGCGATGTACGTTGAAAACTCCTTCAAAGGC
CGCAACGTGAACGGCCCTATCATGTTGGCCATGCATCCCCACGGCATCAT
GCCTCACTCTTTCCTTCTCAACGGTGCCGGGCGGATCCACGCGCAGAAAC
CAGAGGTATTCCTCCCTCCACACTATCAAGATATGTCTCTCAAATCGACG
GGCGTAGCGGAGCCTTTGTTGTTTCGGATTCCGTTTATCTCGGCGTTTCT
ATACTTTTTCGGATGTGCCGAACCAGCGTCAAAGGAGATGATGCACGACA
TCTTGGGGAGGCAGGTGCCGTTTGGGATTCTGATGGGTCTATTTGGCAGT
GGGATCATCGAGCAGCAAGAGCAGGCGAAGCTGAAGCAGAAACCGTCTCC
GCTGCGGGAGCTCAAGGGAGGCAATAAAAGCAGCAAGCACAAGGAACCCC
TGACGCCCTCCAGTAATCTGAGGCCGGCCCGCTCCCCGACCGAGGTAGAC
TGGAGCTCTTTTCCCGAGGGCAGCTACACGCGCTTCGGGCATGGCGGGGA
TTGGTGGACGCTGATCAAGGGGACGATAGCCATTTTGTTCACGTGGGGAA
CCTGGCTGGCCGGCGGCTTGTCTCCCGTTTGGATGACTTGGTTGTTTTGG
CACGGATACAAAAAGACGTTTTATTCGATCTTGGGCCCTTTGCTCTATCC
GCTTTTGTTGCCAGTGCCGGCCTGGCCTGGATTCGTCCGATTCATTCTAA
ACATGGCTGGGTATTTTGAGGTTGGTGGCTCAGAAGAAATTCTCCTCATG
GAGTACCAGAAGGAAAACATCTACATCCTGGAACGCAAAGGCTTCATCAA
ATACGCCCTCCAACACGGCTACACCATTGCTATTGGCTATCTGTTCGGGG
AATCCAACCTCTACCACACCATCACCTGGGGCCGCAAGACCCGCCTCGCT
CTCTTCAAAAAATTCAAGATCCCCCTCTTCTTGGCTTGGGGGCGTTGGTT
CTTCCCCTTACTTCCTGAGCGAGCCGCGCCTTTGAATGCTGTCGTAGGTA
ACCCGATAGATTTGCCCAGGGTAGCTAACCCAAGCCAGGCCGACATTGAC
AAATACCATGCGTTGTACATTGAGAAGTTGACAGACTTGTTCGAACGGAA
TAAGGCGGCCTTCGGGTATTCTGATCGGACGTTGAATTTCTTTTAGGGCG
GTGCAGCGATGTACGTTGAAAACTCCTTCAAAGGCCGCAACGTGAACGGC
CCTATCATGTTGGCCATGCATCCCCACGGCATCATGCCTCACTCTTTCCT
TCTCAACGGTGCCGGGCGGATCCACGCGCAGAAACCAGAGGTATTCCTCC
CTCCACACTATCAAGATATGTCTCTCAAATCGACGGGCGTAGCGGAGCCT
TTGTTGTTTCGGATTCCGTTTATCTCGGCGTTTCTATACTTTTTCGGATG
TGCCGAACCAGCGTCAAAGGAGATGATGCACGACATCTTGGGGAGGCAGG
TGCCGTTTGGGATTCTGATGGGTCTATTTGGCAGTGGGATCATCGAGCAG
CAAGAGCAGGCGAAGCTGAAGCAGAAACCGTCTCCGCTGCGGGAGCTCAA
GGGAGGCAATAAAAGCAGCAAGCACAAGGAACCCCTGACGCCCTCCAGTA
ATCTGAGGCCGGCCCGCTCCCCGACCGAGGTAGACTGGAGCTCTTTTCCC
GAGGGCAGCTACACGCGCTTCGGGCATGGCGGGGATTGGTGGACGCTGAT
CAAGGGGACGATAGCCATTTTGTTCACGTGGGGAACCTGGCTGGCCGGCG
GCTTGTCTCCCGTTTGGATGACTTGGTTGTTTTGGCACGGATACAAAAAG
ACGTTTTATTCGATCTTGGGCCCTTTGCTCTATCCGCTTTTGTTGCCAGT
GCCGGCCTGGCCTGGATTCGTCCGATTCATTCTAAACATGGCTGGGTATT
TTGAG back to top
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