jgi.p|Nanoce1779_2|571730, mRNA_1321 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571730
Unique NamemRNA_1321
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length850
Alignment locationscaffold_1:271414..272263 +

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Properties
Property NameValue
TranscriptId571816
TrackFilteredModels2
ProteinId571730
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:271414..272263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571730gene_1321Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571730mRNA_1321-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1321CDS_1321Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1321 ID=mRNA_1321|Name=jgi.p|Nanoce1779_2|571730|organism=Nannochloropsis oceanica|type=mRNA|length=850bp
GCGGGGGGGGGCTTGGGGCAGGCAGTGGCTTGCTCGAGTACTTGAGAAGG
GTGGTGGACCCAAACCAAATGGACTTTGACGCAGCCTTTGAGGACATTTT
GATGCTCTGCTCCTCTCACCCACAACGGATGTACAAGATGGCGTCTTATA
GGAAGCATACCAAGAACCATTGGGCTCGGGATGACCCCGCCTTGGCCGTT
GTGCAAATCGCTTTCCTCGTCGCCTCCTCTCTCGCATACGCCCTCGCCTT
TCATGTGCGTGGGGGGCCGGTACGGTACCTTTTGCTGGCGTTGCGTGCGA
TTATTTTTGATTGGTTGCTGGTGGGGTTGGTGGTAGCGACAGCCTGTCGA
TGGGTCGCGAATCGATACCTGTTGCAACAGCGGTCACATAGTGTGGAACA
AGAGGTAGAATGGCGCTATGCTTTTGACATCCACTGCAATGCCTTTCTCC
CATTCTTTCTCCTCACATCCGTTTTACATTACTTTTTCTTGCCCCTTCTT
CTCCACCCCTCCCTCATGGCCCTGATTGCGTCGAACACCCTTTTTGCGAT
TGCGGTTTCTTTGTATTTCTATGTTACCCACCTCGGATATCGTGCCCTCC
CCTTTCTCCACCGTACGGAGGTCTTTCTCTATCCCTCCTCCCTTGCAGTG
GTCCTCTTTTTTTTATTTTTGGTGTTGGGAATGTTGGGGGAGCCGTATCG
CTTTCAGGCGACTAGGTTGATGGCGCAGTTGTATTATCGTTGAGGGGGAG
GAAGATGTAGAGGACGGAAGGGAGACTACGGTGCGTATATATGAAGCGGA
GACCTTTTATGGTGTAACAAAAATGAAAGCAAAGATATCATTTAATGCGG
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protein sequence of jgi.p|Nanoce1779_2|571730

>mRNA_1321-protein ID=mRNA_1321-protein|Name=jgi.p|Nanoce1779_2|571730|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MDFDAAFEDILMLCSSHPQRMYKMASYRKHTKNHWARDDPALAVVQIAFL
VASSLAYALAFHVRGGPVRYLLLALRAIIFDWLLVGLVVATACRWVANRY
LLQQRSHSVEQEVEWRYAFDIHCNAFLPFFLLTSVLHYFFLPLLLHPSLM
ALIASNTLFAIAVSLYFYVTHLGYRALPFLHRTEVFLYPSSLAVVLFFLF
LVLGMLGEPYRFQATRLMAQLYYR*
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mRNA from alignment at scaffold_1:271414..272263+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1321 ID=mRNA_1321|Name=jgi.p|Nanoce1779_2|571730|organism=Nannochloropsis oceanica|type=mRNA|length=850bp|location=Sequence derived from alignment at scaffold_1:271414..272263+ (Nannochloropsis oceanica)
GCGGGGGGGGGCTTGGGGCAGGCAGTGGCTTGCTCGAGTACTTGAGAAGG
GTGGTGGACCCAAACCAAATGGACTTTGACGCAGCCTTTGAGGACATTTT
GATGCTCTGCTCCTCTCACCCACAACGGATGTACAAGATGGCGTCTTATA
GGAAGCATACCAAGAACCATTGGGCTCGGGATGACCCCGCCTTGGCCGTT
GTGCAAATCGCTTTCCTCGTCGCCTCCTCTCTCGCATACGCCCTCGCCTT
TCATGTGCGTGGGGGGCCGGTACGGTACCTTTTGCTGGCGTTGCGTGCGA
TTATTTTTGATTGGTTGCTGGTGGGGTTGGTGGTAGCGACAGCCTGTCGA
TGGGTCGCGAATCGATACCTGTTGCAACAGCGGTCACATAGTGTGGAACA
AGAGGTAGAATGGCGCTATGCTTTTGACATCCACTGCAATGCCTTTCTCC
CATTCTTTCTCCTCACATCCGTTTTACATTACTTTTTCTTGCCCCTTCTT
CTCCACCCCTCCCTCATGGCCCTGATTGCGTCGAACACCCTTTTTGCGAT
TGCGGTTTCTTTGTATTTCTATGTTACCCACCTCGGATATCGTGCCCTCC
CCTTTCTCCACCGTACGGAGGTCTTTCTCTATCCCTCCTCCCTTGCAGTG
GTCCTCTTTTTTTTATTTTTGGTGTTGGGAATGTTGGGGGAGCCGTATCG
CTTTCAGGCGACTAGGTTGATGGCGCAGTTGTATTATCGTTGAGGGGGAG
GAAGATGTAGAGGACGGAAGGGAGACTACGGTGCGTATATATGAAGCGGA
GACCTTTTATGGTGTAACAAAAATGAAAGCAAAGATATCATTTAATGCGG
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Coding sequence (CDS) from alignment at scaffold_1:271414..272263+

>mRNA_1321 ID=mRNA_1321|Name=jgi.p|Nanoce1779_2|571730|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at scaffold_1:271414..272263+ (Nannochloropsis oceanica)
ATGGACTTTGACGCAGCCTTTGAGGACATTTTGATGCTCTGCTCCTCTCA
CCCACAACGGATGTACAAGATGGCGTCTTATAGGAAGCATACCAAGAACC
ATTGGGCTCGGGATGACCCCGCCTTGGCCGTTGTGCAAATCGCTTTCCTC
GTCGCCTCCTCTCTCGCATACGCCCTCGCCTTTCATGTGCGTGGGGGGCC
GGTACGGTACCTTTTGCTGGCGTTGCGTGCGATTATTTTTGATTGGTTGC
TGGTGGGGTTGGTGGTAGCGACAGCCTGTCGATGGGTCGCGAATCGATAC
CTGTTGCAACAGCGGTCACATAGTGTGGAACAAGAGGTAGAATGGCGCTA
TGCTTTTGACATCCACTGCAATGCCTTTCTCCCATTCTTTCTCCTCACAT
CCGTTTTACATTACTTTTTCTTGCCCCTTCTTCTCCACCCCTCCCTCATG
GCCCTGATTGCGTCGAACACCCTTTTTGCGATTGCGGTTTCTTTGTATTT
CTATGTTACCCACCTCGGATATCGTGCCCTCCCCTTTCTCCACCGTACGG
AGGTCTTTCTCTATCCCTCCTCCCTTGCAGTGGTCCTCTTTTTTTTATTT
TTGGTGTTGGGAATGTTGGGGGAGCCGTATCGCTTTCAGGCGACTAGGTT
GATGGCGCAGTTGTATTATCGTTGA
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Synonyms
Publications