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Properties
| Property Name | Value |
|---|
| TranscriptId | 549021 |
| Track | FilteredModels2 |
| ProteinId | 548935 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:268372..270552 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1320 ID=mRNA_1320|Name=jgi.p|Nanoce1779_2|548935|organism=Nannochloropsis oceanica|type=mRNA|length=2019bp
ATGCTTGATGAAGGCACTTCCGACATAGCGGATCCCACCCACCCCGGTAC
CCGTCACGTGACCTATGAGGGATTCAAGCTTTTTACGGGCCTCATGCTCA
TTTGCACGTTGGGTGTGGTCTTGTCCGCGCTGTGGATGCAACTGATGGTT
ACCTGCGCCCCCGCCCTTTTGACTTATACGCTCATGGCAGTGGCTCTCCT
CGGTCTGTTCGGAAGCGCTGCGTTCTTGGCGGGTGCTAATCCCTGGGCGG
GGGTCATCACCTTGCTTGTAACGCTTACGGCATTGGTTTATTTCCAACAA
TTTCGAAGGCGCATGGCATTTGCGACCGCAAACTTAAAGGTGGCTTGTCG
GGCGTTGTGGGATAGCACTCCTCTTCTAGGGGTGGGGCTGGGCCTTCTCC
TGCTTCAGGTTGGCTGGGGAGTTCTGTGGGCATTGGCCTTGGTGGGCGCA
GCGACGAATGCAGATCTGACAACTCTAAAGGACCCGGTTTCGGGGACCCT
GTATGCGGGTTGGTTGGTTGTATTGTTGCTTGGGTTCCTGTGGGGGTGTT
CGGTGATTCGAAATGTGGGTCATTGCTGCGTGGCAGGGACTGTGGGAACG
TGGTGGGTGAGTGGGGGTGAACGAGCAAGTAGCTCGGTAGGGCCGCATTT
TCGGAGGGCCATTACCACATCATTTGGTAGCATTTGCTTGGGTTCGTTGC
TAGTGGCGATTGTGCAGACGACGAGGCATGTGTTGTTGAATGCGCACAGG
GCGAATCAGCGAACGGTGCAATCAAACACGATTACGGCCATGTTGAGTTG
TGTGCTCGTAGTGGTTGACCGGGCATTGGCGTGGTTCAATCGGTATGCAC
TTGTGTATGTTGCACTTTACGGACTGGATTTTATGAGTGCGGGAAAGGCG
ACCACGGAGCTGTTCAAGGCCCGGGGGGTGAGTGCTCTTGTGAATGATAC
GTTGATTGAGGGAGTATTGACGCTCGGGACGATGATCGTCGGCTTGTTGT
GTGCGTTGGTTGGGTGGTTGTATGGGAGGGATTGGGGGTTGAGTCAAGCG
AATATCGCAATTTTGGGGGTGAGTGGAGCGTTTATAGGCGTGGCTTTGGC
GGGGGTGGTGGCGGGGTTGGTGGAGAGCAGCGTGTGCACCACCTTTGTGT
TGTTTGCAGAGGATCCGCAGAGCCTGGAAATTAGCCATGGGGGTGCGGGG
AAAGAAGGGGAGATGTGTGAGGAGCTCATGCAGGCATGGGAGGATGTTTT
GCAAGGGCCTTTGTCGGGGATGGGAGGGATGATGGGGGGCGGGGGAGGGA
GGGAAGGAGGGAGGGAGGGCTTTAGGCCGCCGACATTATCATCTTCGCCG
TCGCCGTTTGCGGCGGGGGCACCGCCAGCGTCGGGGAAGAAAAACATACC
TACCCCTCCTCCTCCACCACCACCACCCACAGCACCAATAGCCGCAACAA
CATCACCACCAACAGCAGAACCTCAGACTGCAGTAGAAAAGGCGGTGGCA
AATTTCGGGGGGGGCTCATCCTTGTTGATGGGGATGATGGGAGGGAGTGG
AAGCAGTGGAGGTAGCGGCGGAGAAAGGACGCCAGCGTTGGACGTTAGCG
AAGGGGAGCAGGAGGAGGAGGAGGAGGAAGATGGGGAGAGGGAGGAGGAG
GTCGAGGAGGTGTAAGTGGGCTTGTGAATGCGGGGGATATACTTTTGTGC
AGGTGCGCGTGTTTTTTTAACAACGACTTAAAAGAAAAGAGGCAGCATGT
AGGTGAAGGTGAACGAAAAGAGAGAAGTTGGATGCGTTAGGTGAAAGGAA
GAGATGGGAACGGACACAATTGTGCATAGGAGTTGCCTCCGCCGTTCACT
CACTACGTACATACACTCCAACAACAAAAAAAGAGACCTCCCTTGTCCTG
AACGCTTGATTCGAACGAGAGAAAGAAGTGAGGAACTTAATCAAGAAGAA
ACGAATGCGCGAAAGAGAGGAAGAGAGAGCTAAAGAAAACGGGAAAGAAG
AAAGACACAGGATGAAAAA back to topprotein sequence of jgi.p|Nanoce1779_2|548935 >mRNA_1320-protein ID=mRNA_1320-protein|Name=jgi.p|Nanoce1779_2|548935|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MLDEGTSDIADPTHPGTRHVTYEGFKLFTGLMLICTLGVVLSALWMQLMV
TCAPALLTYTLMAVALLGLFGSAAFLAGANPWAGVITLLVTLTALVYFQQ
FRRRMAFATANLKVACRALWDSTPLLGVGLGLLLLQVGWGVLWALALVGA
ATNADLTTLKDPVSGTLYAGWLVVLLLGFLWGCSVIRNVGHCCVAGTVGT
WWVSGGERASSSVGPHFRRAITTSFGSICLGSLLVAIVQTTRHVLLNAHR
ANQRTVQSNTITAMLSCVLVVVDRALAWFNRYALVYVALYGLDFMSAGKA
TTELFKARGVSALVNDTLIEGVLTLGTMIVGLLCALVGWLYGRDWGLSQA
NIAILGVSGAFIGVALAGVVAGLVESSVCTTFVLFAEDPQSLEISHGGAG
KEGEMCEELMQAWEDVLQGPLSGMGGMMGGGGGREGGREGFRPPTLSSSP
SPFAAGAPPASGKKNIPTPPPPPPPPTAPIAATTSPPTAEPQTAVEKAVA
NFGGGSSLLMGMMGGSGSSGGSGGERTPALDVSEGEQEEEEEEDGEREEE
VEEV* back to topmRNA from alignment at scaffold_1:268372..270552- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1320 ID=mRNA_1320|Name=jgi.p|Nanoce1779_2|548935|organism=Nannochloropsis oceanica|type=mRNA|length=2181bp|location=Sequence derived from alignment at scaffold_1:268372..270552- (Nannochloropsis oceanica)
ATGCTTGATGAAGGCACTTCCGACATAGCGGATCCCACCCACCCCGGTAC
CCGTCACGTGACCTATGAGGGATTCAAGCTTTTTACGGGCCTCATGCTCA
TTTGCACGTTGGGTGTGGTCTTGTCCGCGCTGTGGATGCAACTGATGGTT
ACCTGCGCCCCCGCCCTTTTGACTTATACGCTCATGGCAGTGGCTCTCCT
CGGTCTGTTCGGAAGCGCTGCGTTCTTGGCGGGTGCTAATCCCTGGGCGG
GGGTCATCACCTTGCTTGTAACGCTTACGGCATTGGTTTATTTCCAACAA
TTTCGAAGGCGCATGGCATTTGCGACCGCAAACTTAAAGGTGGCTTGTCG
GGCGTTGTGGGATAGCACTCCTCTTCTAGGGGTGGGGCTGGGCCTTCTCC
TGCTTCAGGTTGGCTGGGGAGTTCTGTGGGCATTGGCCTTGGTGGGCGCA
GCGACGAATGCAGATCTGACAACTCTAAAGGACCCGGTTTCGGGGACCGT
TTATTCGATGAGTCAATGCACGACGTACGAGACGCTTGGGCCGAACGCGA
ATTTTACGAGTACGTGCGTGACGGCGGGGGAGGTATGTATGAAGTGTGTT
TGTGGGAGTGGTGCGGAGGCAGTGACGATGTGGGAGGGAAGAGTGTGTTT
TACGTACAAGCTGTATGCGGGTTGGTTGGTTGTATTGTTGCTTGGGTTCC
TGTGGGGGTGTTCGGTGATTCGAAATGTGGGTCATTGCTGCGTGGCAGGG
ACTGTGGGAACGTGGTGGGTGAGTGGGGGTGAACGAGCAAGTAGCTCGGT
AGGGCCGCATTTTCGGAGGGCCATTACCACATCATTTGGTAGCATTTGCT
TGGGTTCGTTGCTAGTGGCGATTGTGCAGACGACGAGGCATGTGTTGTTG
AATGCGCACAGGGCGAATCAGCGAACGGTGCAATCAAACACGATTACGGC
CATGTTGAGTTGTGTGCTCGTAGTGGTTGACCGGGCATTGGCGTGGTTCA
ATCGGTATGCACTTGTGTATGTTGCACTTTACGGACTGGATTTTATGAGT
GCGGGAAAGGCGACCACGGAGCTGTTCAAGGCCCGGGGGGTGAGTGCTCT
TGTGAATGATACGTTGATTGAGGGAGTATTGACGCTCGGGACGATGATCG
TCGGCTTGTTGTGTGCGTTGGTTGGGTGGTTGTATGGGAGGGATTGGGGG
TTGAGTCAAGCGAATATCGCAATTTTGGGGGTGAGTGGAGCGTTTATAGG
CGTGGCTTTGGCGGGGGTGGTGGCGGGGTTGGTGGAGAGCAGCGTGTGCA
CCACCTTTGTGTTGTTTGCAGAGGATCCGCAGAGCCTGGAAATTAGCCAT
GGGGGTGCGGGGAAAGAAGGGGAGATGTGTGAGGAGCTCATGCAGGCATG
GGAGGATGTTTTGCAAGGGCCTTTGTCGGGGATGGGAGGGATGATGGGGG
GCGGGGGAGGGAGGGAAGGAGGGAGGGAGGGCTTTAGGCCGCCGACATTA
TCATCTTCGCCGTCGCCGTTTGCGGCGGGGGCACCGCCAGCGTCGGGGAA
GAAAAACATACCTACCCCTCCTCCTCCACCACCACCACCCACAGCACCAA
TAGCCGCAACAACATCACCACCAACAGCAGAACCTCAGACTGCAGTAGAA
AAGGCGGTGGCAAATTTCGGGGGGGGCTCATCCTTGTTGATGGGGATGAT
GGGAGGGAGTGGAAGCAGTGGAGGTAGCGGCGGAGAAAGGACGCCAGCGT
TGGACGTTAGCGAAGGGGAGCAGGAGGAGGAGGAGGAGGAAGATGGGGAG
AGGGAGGAGGAGGTCGAGGAGGTGTAAGTGGGCTTGTGAATGCGGGGGAT
ATACTTTTGTGCAGGTGCGCGTGTTTTTTTAACAACGACTTAAAAGAAAA
GAGGCAGCATGTAGGTGAAGGTGAACGAAAAGAGAGAAGTTGGATGCGTT
AGGTGAAAGGAAGAGATGGGAACGGACACAATTGTGCATAGGAGTTGCCT
CCGCCGTTCACTCACTACGTACATACACTCCAACAACAAAAAAAGAGACC
TCCCTTGTCCTGAACGCTTGATTCGAACGAGAGAAAGAAGTGAGGAACTT
AATCAAGAAGAAACGAATGCGCGAAAGAGAGGAAGAGAGAGCTAAAGAAA
ACGGGAAAGAAGAAAGACACAGGATGAAAAA back to topCoding sequence (CDS) from alignment at scaffold_1:268372..270552- >mRNA_1320 ID=mRNA_1320|Name=jgi.p|Nanoce1779_2|548935|organism=Nannochloropsis oceanica|type=CDS|length=3330bp|location=Sequence derived from alignment at scaffold_1:268372..270552- (Nannochloropsis oceanica)
CTGTATGCGGGTTGGTTGGTTGTATTGTTGCTTGGGTTCCTGTGGGGGTG
TTCGGTGATTCGAAATGTGGGTCATTGCTGCGTGGCAGGGACTGTGGGAA
CGTGGTGGGTGAGTGGGGGTGAACGAGCAAGTAGCTCGGTAGGGCCGCAT
TTTCGGAGGGCCATTACCACATCATTTGGTAGCATTTGCTTGGGTTCGTT
GCTAGTGGCGATTGTGCAGACGACGAGGCATGTGTTGTTGAATGCGCACA
GGGCGAATCAGCGAACGGTGCAATCAAACACGATTACGGCCATGTTGAGT
TGTGTGCTCGTAGTGGTTGACCGGGCATTGGCGTGGTTCAATCGGTATGC
ACTTGTGTATGTTGCACTTTACGGACTGGATTTTATGAGTGCGGGAAAGG
CGACCACGGAGCTGTTCAAGGCCCGGGGGGTGAGTGCTCTTGTGAATGAT
ACGTTGATTGAGGGAGTATTGACGCTCGGGACGATGATCGTCGGCTTGTT
GTGTGCGTTGGTTGGGTGGTTGTATGGGAGGGATTGGGGGTTGAGTCAAG
CGAATATCGCAATTTTGGGGGTGAGTGGAGCGTTTATAGGCGTGGCTTTG
GCGGGGGTGGTGGCGGGGTTGGTGGAGAGCAGCGTGTGCACCACCTTTGT
GTTGTTTGCAGAGGATCCGCAGAGCCTGGAAATTAGCCATGGGGGTGCGG
GGAAAGAAGGGGAGATGTGTGAGGAGCTCATGCAGGCATGGGAGGATGTT
TTGCAAGGGCCTTTGTCGGGGATGGGAGGGATGATGGGGGGCGGGGGAGG
GAGGGAAGGAGGGAGGGAGGGCTTTAGGCCGCCGACATTATCATCTTCGC
CGTCGCCGTTTGCGGCGGGGGCACCGCCAGCGTCGGGGAAGAAAAACATA
CCTACCCCTCCTCCTCCACCACCACCACCCACAGCACCAATAGCCGCAAC
AACATCACCACCAACAGCAGAACCTCAGACTGCAGTAGAAAAGGCGGTGG
CAAATTTCGGGGGGGGCTCATCCTTGTTGATGGGGATGATGGGAGGGAGT
GGAAGCAGTGGAGGTAGCGGCGGAGAAAGGACGCCAGCGTTGGACGTTAG
CGAAGGGGAGCAGGAGGAGGAGGAGGAGGAAGATGGGGAGAGGGAGGAGG
AGGTCGAGGAGGTGTAAATGCTTGATGAAGGCACTTCCGACATAGCGGAT
CCCACCCACCCCGGTACCCGTCACGTGACCTATGAGGGATTCAAGCTTTT
TACGGGCCTCATGCTCATTTGCACGTTGGGTGTGGTCTTGTCCGCGCTGT
GGATGCAACTGATGGTTACCTGCGCCCCCGCCCTTTTGACTTATACGCTC
ATGGCAGTGGCTCTCCTCGGTCTGTTCGGAAGCGCTGCGTTCTTGGCGGG
TGCTAATCCCTGGGCGGGGGTCATCACCTTGCTTGTAACGCTTACGGCAT
TGGTTTATTTCCAACAATTTCGAAGGCGCATGGCATTTGCGACCGCAAAC
TTAAAGGTGGCTTGTCGGGCGTTGTGGGATAGCACTCCTCTTCTAGGGGT
GGGGCTGGGCCTTCTCCTGCTTCAGGTTGGCTGGGGAGTTCTGTGGGCAT
TGGCCTTGGTGGGCGCAGCGACGAATGCAGATCTGACAACTCTAAAGGAC
CCGGTTTCGGGGACCCTGTATGCGGGTTGGTTGGTTGTATTGTTGCTTGG
GTTCCTGTGGGGGTGTTCGGTGATTCGAAATGTGGGTCATTGCTGCGTGG
CAGGGACTGTGGGAACGTGGTGGGTGAGTGGGGGTGAACGAGCAAGTAGC
TCGGTAGGGCCGCATTTTCGGAGGGCCATTACCACATCATTTGGTAGCAT
TTGCTTGGGTTCGTTGCTAGTGGCGATTGTGCAGACGACGAGGCATGTGT
TGTTGAATGCGCACAGGGCGAATCAGCGAACGGTGCAATCAAACACGATT
ACGGCCATGTTGAGTTGTGTGCTCGTAGTGGTTGACCGGGCATTGGCGTG
GTTCAATCGGTATGCACTTGTGTATGTTGCACTTTACGGACTGGATTTTA
TGAGTGCGGGAAAGGCGACCACGGAGCTGTTCAAGGCCCGGGGGGTGAGT
GCTCTTGTGAATGATACGTTGATTGAGGGAGTATTGACGCTCGGGACGAT
GATCGTCGGCTTGTTGTGTGCGTTGGTTGGGTGGTTGTATGGGAGGGATT
GGGGGTTGAGTCAAGCGAATATCGCAATTTTGGGGGTGAGTGGAGCGTTT
ATAGGCGTGGCTTTGGCGGGGGTGGTGGCGGGGTTGGTGGAGAGCAGCGT
GTGCACCACCTTTGTGTTGTTTGCAGAGGATCCGCAGAGCCTGGAAATTA
GCCATGGGGGTGCGGGGAAAGAAGGGGAGATGTGTGAGGAGCTCATGCAG
GCATGGGAGGATGTTTTGCAAGGGCCTTTGTCGGGGATGGGAGGGATGAT
GGGGGGCGGGGGAGGGAGGGAAGGAGGGAGGGAGGGCTTTAGGCCGCCGA
CATTATCATCTTCGCCGTCGCCGTTTGCGGCGGGGGCACCGCCAGCGTCG
GGGAAGAAAAACATACCTACCCCTCCTCCTCCACCACCACCACCCACAGC
ACCAATAGCCGCAACAACATCACCACCAACAGCAGAACCTCAGACTGCAG
TAGAAAAGGCGGTGGCAAATTTCGGGGGGGGCTCATCCTTGTTGATGGGG
ATGATGGGAGGGAGTGGAAGCAGTGGAGGTAGCGGCGGAGAAAGGACGCC
AGCGTTGGACGTTAGCGAAGGGGAGCAGGAGGAGGAGGAGGAGGAAGATG
GGGAGAGGGAGGAGGAGGTCGAGGAGGTGTAAATGCTTGATGAAGGCACT
TCCGACATAGCGGATCCCACCCACCCCGGTACCCGTCACGTGACCTATGA
GGGATTCAAGCTTTTTACGGGCCTCATGCTCATTTGCACGTTGGGTGTGG
TCTTGTCCGCGCTGTGGATGCAACTGATGGTTACCTGCGCCCCCGCCCTT
TTGACTTATACGCTCATGGCAGTGGCTCTCCTCGGTCTGTTCGGAAGCGC
TGCGTTCTTGGCGGGTGCTAATCCCTGGGCGGGGGTCATCACCTTGCTTG
TAACGCTTACGGCATTGGTTTATTTCCAACAATTTCGAAGGCGCATGGCA
TTTGCGACCGCAAACTTAAAGGTGGCTTGTCGGGCGTTGTGGGATAGCAC
TCCTCTTCTAGGGGTGGGGCTGGGCCTTCTCCTGCTTCAGGTTGGCTGGG
GAGTTCTGTGGGCATTGGCCTTGGTGGGCGCAGCGACGAATGCAGATCTG
ACAACTCTAAAGGACCCGGTTTCGGGGACC back to top
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