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Properties
| Property Name | Value |
|---|
| TranscriptId | 571809 |
| Track | FilteredModels2 |
| ProteinId | 571723 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:266386..268213 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1319 ID=mRNA_1319|Name=jgi.p|Nanoce1779_2|571723|organism=Nannochloropsis oceanica|type=mRNA|length=1404bp
AAACCAACAGACACACAGGCGTCTTCGAGACCCGCAGCATTGACAACAGT
CTGTCGTCGCCCTCATCGTCGTCATCATGATGCTGGCCCGTGGTGGTGCT
GCCGCGTCAAGCAAGCGCCTCCTCTCCTCAACCCGCATTGCCTTCCTCCT
TCCTTCCAATGCCGCTGCCACCTCCCCCCGCATACTCGAACAACGCAGTA
GCCTTCCCCTCGCCGCCCTGGCGGCAAATGGTACAAGCGTCTCACGACGT
GCCTTGGCCTCCATGTCCCACAACAACTACCAGTTCTCGACGATGTATGA
AGATGTGTGGCCAATGGGAAGCACCAACACTATCCTAAACGTCTGCCCGC
AGGGAGAGCGCTTCGTGGTGGAACGGTTCGGAAAGCTATTGGACATCAAG
GAGTCAGGGTGGTTCCTCGCCATTCCCTACGTCGACCGGATAGCTTACAG
AATTGACATGCGCGAGCGGGCCATGGCGATCGCACCTCAACCTGCCATTA
CCAAAGACAATGTGTCTGTGGACGTGAGCGGTATACTCTACGTTCAGTTC
GTCGATCCGGCACAAGCAGCCTACGGCTCGTTTAACCCGCTGTATGCCGT
GCGGCAATGCGCGCAATCAGCAATGAGAGCGGCATTGGGCGAGTTGGAAC
TCGATGAGATTTTGCATGCCCGTAGTCGGTTAAACGAGATGATTCGAAAG
AGCATCCAGGATGCGTGTACGGCGTGGGGAATGGATGTCAAGAGGTATGA
AATAACCGAAATCCGACCGGACAAGACCATTACTCTGGCCATGGATAAAC
AAGCAGCCGCGGAGCGAAACCGACGGGAGATGGTCATCAAGGCAGAGGGA
GAGAAACGAGCTCAGGAACTCAAATCCGAGGGGATCAAAATCAAGCTGAC
CAACGAATCAGAGGGTGAATTGATCAAGACTAAGAATGAGGCGGAGGCCC
GAAAGCAGCAGTATATCTTGGAAGGGGAGGGGGAGGCGAAGGCGATTCGG
TTGAAGGCGGAGGCATTCGCTGAGTCGATACGGGTGGTGGGCCAGAGCTT
GGGGGGGGAGCAGGGGCAGGATGCAGCCCAGTTGCAGATAGCGAAAGACT
ATATCGGTATGTATGGCCTGATGGGGAGTCAGAGCCACACGATGGTCTTT
TCGGAGCGTCCGGGGGATGTGAATGCCCTGTTCGCCCAGGCGGCCTTGGC
GTTGCAGGCGGCTGGGAAGAGCTCGGTGAATGGGAATGCGCCGAGTCCTA
CGAGTGTTGTCCCCACGCCCGGGTATCTGGGCGAGCGGGGGTTTGGTGGC
GGGGGGATGGGGAAGGGAGGAGGGAGAGCGCGGATGGGACCTGGAGCAGG
GGAGGAGACGAATGAGAGTTAAGAATATGGACGGAGGGACAGAGGGAGGG
AGGG back to topprotein sequence of jgi.p|Nanoce1779_2|571723 >mRNA_1319-protein ID=mRNA_1319-protein|Name=jgi.p|Nanoce1779_2|571723|organism=Nannochloropsis oceanica|type=polypeptide|length=432bp
MMLARGGAAASSKRLLSSTRIAFLLPSNAAATSPRILEQRSSLPLAALAA
NGTSVSRRALASMSHNNYQFSTMYEDVWPMGSTNTILNVCPQGERFVVER
FGKLLDIKESGWFLAIPYVDRIAYRIDMRERAMAIAPQPAITKDNVSVDV
SGILYVQFVDPAQAAYGSFNPLYAVRQCAQSAMRAALGELELDEILHARS
RLNEMIRKSIQDACTAWGMDVKRYEITEIRPDKTITLAMDKQAAAERNRR
EMVIKAEGEKRAQELKSEGIKIKLTNESEGELIKTKNEAEARKQQYILEG
EGEAKAIRLKAEAFAESIRVVGQSLGGEQGQDAAQLQIAKDYIGMYGLMG
SQSHTMVFSERPGDVNALFAQAALALQAAGKSSVNGNAPSPTSVVPTPGY
LGERGFGGGGMGKGGGRARMGPGAGEETNES* back to topmRNA from alignment at scaffold_1:266386..268213+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1319 ID=mRNA_1319|Name=jgi.p|Nanoce1779_2|571723|organism=Nannochloropsis oceanica|type=mRNA|length=1828bp|location=Sequence derived from alignment at scaffold_1:266386..268213+ (Nannochloropsis oceanica)
AAACCAACAGACACACAGGCGTCTTCGAGACCCGCAGCATTGACAACAGT
CTGTCGTCGCCCTCATCGTCGTCATCATGATGCTGGCCCGTGGTGGTGCT
GCCGCGTCAAGCAAGCGCCTCCTCTCCTCAACCCGCATTGCCTTCCTCCT
TCCTTCCAATGCCGCTGCCACCTCCCCCCGCATACTCGAACAACGCAGTA
GCCTTCCCCTCGCCGCCCTGGCGGCAAATGGTACAAGCGTCTCACGACGT
GCCTTGGCCTCCATGTCCCACAACAACTACCAGTTCTCGACGAGTAAGTC
CAATTATCATCCCCGCCGCCTTGCCTTTCCCTTCCCCTCCTCACCCTTCC
ATCCTTTCCCACTCTACCTCGTTCAACATCACATCCATCCTTCTCTTTCA
CCATCAAACAAACAGTGTATGAAGATGTGTGGCCAATGGGAAGCACCAAC
ACTATCCTAAACGTCTGCCCGCAGGGAGAGCGCTTCGTGGTGGAACGGTT
CGGAAAGCTATTGGACATCAAGGAGTCAGGGTGGTTCCTCGGTACGTGGT
TCTGGATGTTTGTTACCGTGGATCACACTTGAGTAATCCACTTCCCCTTT
CTTCCGCTCTTCCTTTCAAGCATTTATTTTCCCCGAGAAAATCAACCACA
CTCATCCACCTCTCCCTTCTGCCCTCACACTCCCTCCTTCCTTCCTTCAG
CCATTCCCTACGTCGACCGGATAGCTTACAGAATTGACATGCGCGAGCGG
GCCATGGCGATCGCACCTCAACCTGCCATTACCAAAGACAATGTGTCTGT
GGACGTGAGCGGTATACTCTACGTTCAGTTCGTCGATCCGGCACAAGCAG
CCTACGGCTCGTTTAACCCGCTGTATGCCGTGCGGCAATGCGCGCAATCA
GCAATGAGAGCGGCATTGGGCGAGTTGGAACTCGATGAGATTTTGCATGC
CCGTAGTCGGTTAAACGAGATGATTCGAAAGAGCATCCAGGATGCGTGTA
CGGCGTGGGGAATGGATGTCAAGAGGTGGGTAGGTAGGGAGGAACGGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGGGGGGTCGGTCTAGGTC
AATTTTCTTTGACCCTGTGTGATATCCTTGGATTTCACCCGGAGCTTTGA
TCTCTCCCTTCACCGTAGGTATGAAATAACCGAAATCCGACCGGACAAGA
CCATTACTCTGGCCATGGATAAACAAGCAGCCGCGGAGCGAAACCGACGG
GAGATGGTCATCAAGGCAGAGGGAGAGAAACGAGCTCAGGAACTCAAATC
CGAGGGGATCAAAATCAAGCTGACCAACGAATCAGAGGGTGAATTGATCA
AGACTAAGAATGAGGCGGAGGCCCGAAAGCAGCAGTATATCTTGGAAGGG
GAGGGGGAGGCGAAGGCGATTCGGTTGAAGGCGGAGGCATTCGCTGAGTC
GATACGGGTGGTGGGCCAGAGCTTGGGGGGGGAGCAGGGGCAGGATGCAG
CCCAGTTGCAGATAGCGAAAGACTATATCGGTATGTATGGCCTGATGGGG
AGTCAGAGCCACACGATGGTCTTTTCGGAGCGTCCGGGGGATGTGAATGC
CCTGTTCGCCCAGGCGGCCTTGGCGTTGCAGGCGGCTGGGAAGAGCTCGG
TGAATGGGAATGCGCCGAGTCCTACGAGTGTTGTCCCCACGCCCGGGTAT
CTGGGCGAGCGGGGGTTTGGTGGCGGGGGGATGGGGAAGGGAGGAGGGAG
AGCGCGGATGGGACCTGGAGCAGGGGAGGAGACGAATGAGAGTTAAGAAT
ATGGACGGAGGGACAGAGGGAGGGAGGG back to topCoding sequence (CDS) from alignment at scaffold_1:266386..268213+ >mRNA_1319 ID=mRNA_1319|Name=jgi.p|Nanoce1779_2|571723|organism=Nannochloropsis oceanica|type=CDS|length=5184bp|location=Sequence derived from alignment at scaffold_1:266386..268213+ (Nannochloropsis oceanica)
ATGATGCTGGCCCGTGGTGGTGCTGCCGCGTCAAGCAAGCGCCTCCTCTC
CTCAACCCGCATTGCCTTCCTCCTTCCTTCCAATGCCGCTGCCACCTCCC
CCCGCATACTCGAACAACGCAGTAGCCTTCCCCTCGCCGCCCTGGCGGCA
AATGGTACAAGCGTCTCACGACGTGCCTTGGCCTCCATGTCCCACAACAA
CTACCAGTTCTCGACGATGTATGAAGATGTGTGGCCAATGGGAAGCACCA
ACACTATCCTAAACGTCTGCCCGCAGGGAGAGCGCTTCGTGGTGGAACGG
TTCGGAAAGCTATTGGACATCAAGGAGTCAGGGTGGTTCCTCGCCATTCC
CTACGTCGACCGGATAGCTTACAGAATTGACATGCGCGAGCGGGCCATGG
CGATCGCACCTCAACCTGCCATTACCAAAGACAATGTGTCTGTGGACGTG
AGCGGTATACTCTACGTTCAGTTCGTCGATCCGGCACAAGCAGCCTACGG
CTCGTTTAACCCGCTGTATGCCGTGCGGCAATGCGCGCAATCAGCAATGA
GAGCGGCATTGGGCGAGTTGGAACTCGATGAGATTTTGCATGCCCGTAGT
CGGTTAAACGAGATGATTCGAAAGAGCATCCAGGATGCGTGTACGGCGTG
GGGAATGGATGTCAAGAGGTATGAAATAACCGAAATCCGACCGGACAAGA
CCATTACTCTGGCCATGGATAAACAAGCAGCCGCGGAGCGAAACCGACGG
GAGATGGTCATCAAGGCAGAGGGAGAGAAACGAGCTCAGGAACTCAAATC
CGAGGGGATCAAAATCAAGCTGACCAACGAATCAGAGGGTGAATTGATCA
AGACTAAGAATGAGGCGGAGGCCCGAAAGCAGCAGTATATCTTGGAAGGG
GAGGGGGAGGCGAAGGCGATTCGGTTGAAGGCGGAGGCATTCGCTGAGTC
GATACGGGTGGTGGGCCAGAGCTTGGGGGGGGAGCAGGGGCAGGATGCAG
CCCAGTTGCAGATAGCGAAAGACTATATCGGTATGTATGGCCTGATGGGG
AGTCAGAGCCACACGATGGTCTTTTCGGAGCGTCCGGGGGATGTGAATGC
CCTGTTCGCCCAGGCGGCCTTGGCGTTGCAGGCGGCTGGGAAGAGCTCGG
TGAATGGGAATGCGCCGAGTCCTACGAGTGTTGTCCCCACGCCCGGGTAT
CTGGGCGAGCGGGGGTTTGGTGGCGGGGGGATGGGGAAGGGAGGAGGGAG
AGCGCGGATGGGACCTGGAGCAGGGGAGGAGACGAATGAGAGTTAAATGA
TGCTGGCCCGTGGTGGTGCTGCCGCGTCAAGCAAGCGCCTCCTCTCCTCA
ACCCGCATTGCCTTCCTCCTTCCTTCCAATGCCGCTGCCACCTCCCCCCG
CATACTCGAACAACGCAGTAGCCTTCCCCTCGCCGCCCTGGCGGCAAATG
GTACAAGCGTCTCACGACGTGCCTTGGCCTCCATGTCCCACAACAACTAC
CAGTTCTCGACGATGTATGAAGATGTGTGGCCAATGGGAAGCACCAACAC
TATCCTAAACGTCTGCCCGCAGGGAGAGCGCTTCGTGGTGGAACGGTTCG
GAAAGCTATTGGACATCAAGGAGTCAGGGTGGTTCCTCGCCATTCCCTAC
GTCGACCGGATAGCTTACAGAATTGACATGCGCGAGCGGGCCATGGCGAT
CGCACCTCAACCTGCCATTACCAAAGACAATGTGTCTGTGGACGTGAGCG
GTATACTCTACGTTCAGTTCGTCGATCCGGCACAAGCAGCCTACGGCTCG
TTTAACCCGCTGTATGCCGTGCGGCAATGCGCGCAATCAGCAATGAGAGC
GGCATTGGGCGAGTTGGAACTCGATGAGATTTTGCATGCCCGTAGTCGGT
TAAACGAGATGATTCGAAAGAGCATCCAGGATGCGTGTACGGCGTGGGGA
ATGGATGTCAAGAGGTATGAAATAACCGAAATCCGACCGGACAAGACCAT
TACTCTGGCCATGGATAAACAAGCAGCCGCGGAGCGAAACCGACGGGAGA
TGGTCATCAAGGCAGAGGGAGAGAAACGAGCTCAGGAACTCAAATCCGAG
GGGATCAAAATCAAGCTGACCAACGAATCAGAGGGTGAATTGATCAAGAC
TAAGAATGAGGCGGAGGCCCGAAAGCAGCAGTATATCTTGGAAGGGGAGG
GGGAGGCGAAGGCGATTCGGTTGAAGGCGGAGGCATTCGCTGAGTCGATA
CGGGTGGTGGGCCAGAGCTTGGGGGGGGAGCAGGGGCAGGATGCAGCCCA
GTTGCAGATAGCGAAAGACTATATCGGTATGTATGGCCTGATGGGGAGTC
AGAGCCACACGATGGTCTTTTCGGAGCGTCCGGGGGATGTGAATGCCCTG
TTCGCCCAGGCGGCCTTGGCGTTGCAGGCGGCTGGGAAGAGCTCGGTGAA
TGGGAATGCGCCGAGTCCTACGAGTGTTGTCCCCACGCCCGGGTATCTGG
GCGAGCGGGGGTTTGGTGGCGGGGGGATGGGGAAGGGAGGAGGGAGAGCG
CGGATGGGACCTGGAGCAGGGGAGGAGACGAATGAGAGTTAAATGATGCT
GGCCCGTGGTGGTGCTGCCGCGTCAAGCAAGCGCCTCCTCTCCTCAACCC
GCATTGCCTTCCTCCTTCCTTCCAATGCCGCTGCCACCTCCCCCCGCATA
CTCGAACAACGCAGTAGCCTTCCCCTCGCCGCCCTGGCGGCAAATGGTAC
AAGCGTCTCACGACGTGCCTTGGCCTCCATGTCCCACAACAACTACCAGT
TCTCGACGATGTATGAAGATGTGTGGCCAATGGGAAGCACCAACACTATC
CTAAACGTCTGCCCGCAGGGAGAGCGCTTCGTGGTGGAACGGTTCGGAAA
GCTATTGGACATCAAGGAGTCAGGGTGGTTCCTCGCCATTCCCTACGTCG
ACCGGATAGCTTACAGAATTGACATGCGCGAGCGGGCCATGGCGATCGCA
CCTCAACCTGCCATTACCAAAGACAATGTGTCTGTGGACGTGAGCGGTAT
ACTCTACGTTCAGTTCGTCGATCCGGCACAAGCAGCCTACGGCTCGTTTA
ACCCGCTGTATGCCGTGCGGCAATGCGCGCAATCAGCAATGAGAGCGGCA
TTGGGCGAGTTGGAACTCGATGAGATTTTGCATGCCCGTAGTCGGTTAAA
CGAGATGATTCGAAAGAGCATCCAGGATGCGTGTACGGCGTGGGGAATGG
ATGTCAAGAGGTATGAAATAACCGAAATCCGACCGGACAAGACCATTACT
CTGGCCATGGATAAACAAGCAGCCGCGGAGCGAAACCGACGGGAGATGGT
CATCAAGGCAGAGGGAGAGAAACGAGCTCAGGAACTCAAATCCGAGGGGA
TCAAAATCAAGCTGACCAACGAATCAGAGGGTGAATTGATCAAGACTAAG
AATGAGGCGGAGGCCCGAAAGCAGCAGTATATCTTGGAAGGGGAGGGGGA
GGCGAAGGCGATTCGGTTGAAGGCGGAGGCATTCGCTGAGTCGATACGGG
TGGTGGGCCAGAGCTTGGGGGGGGAGCAGGGGCAGGATGCAGCCCAGTTG
CAGATAGCGAAAGACTATATCGGTATGTATGGCCTGATGGGGAGTCAGAG
CCACACGATGGTCTTTTCGGAGCGTCCGGGGGATGTGAATGCCCTGTTCG
CCCAGGCGGCCTTGGCGTTGCAGGCGGCTGGGAAGAGCTCGGTGAATGGG
AATGCGCCGAGTCCTACGAGTGTTGTCCCCACGCCCGGGTATCTGGGCGA
GCGGGGGTTTGGTGGCGGGGGGATGGGGAAGGGAGGAGGGAGAGCGCGGA
TGGGACCTGGAGCAGGGGAGGAGACGAATGAGAGTTAAATGATGCTGGCC
CGTGGTGGTGCTGCCGCGTCAAGCAAGCGCCTCCTCTCCTCAACCCGCAT
TGCCTTCCTCCTTCCTTCCAATGCCGCTGCCACCTCCCCCCGCATACTCG
AACAACGCAGTAGCCTTCCCCTCGCCGCCCTGGCGGCAAATGGTACAAGC
GTCTCACGACGTGCCTTGGCCTCCATGTCCCACAACAACTACCAGTTCTC
GACGATGTATGAAGATGTGTGGCCAATGGGAAGCACCAACACTATCCTAA
ACGTCTGCCCGCAGGGAGAGCGCTTCGTGGTGGAACGGTTCGGAAAGCTA
TTGGACATCAAGGAGTCAGGGTGGTTCCTCGCCATTCCCTACGTCGACCG
GATAGCTTACAGAATTGACATGCGCGAGCGGGCCATGGCGATCGCACCTC
AACCTGCCATTACCAAAGACAATGTGTCTGTGGACGTGAGCGGTATACTC
TACGTTCAGTTCGTCGATCCGGCACAAGCAGCCTACGGCTCGTTTAACCC
GCTGTATGCCGTGCGGCAATGCGCGCAATCAGCAATGAGAGCGGCATTGG
GCGAGTTGGAACTCGATGAGATTTTGCATGCCCGTAGTCGGTTAAACGAG
ATGATTCGAAAGAGCATCCAGGATGCGTGTACGGCGTGGGGAATGGATGT
CAAGAGGTATGAAATAACCGAAATCCGACCGGACAAGACCATTACTCTGG
CCATGGATAAACAAGCAGCCGCGGAGCGAAACCGACGGGAGATGGTCATC
AAGGCAGAGGGAGAGAAACGAGCTCAGGAACTCAAATCCGAGGGGATCAA
AATCAAGCTGACCAACGAATCAGAGGGTGAATTGATCAAGACTAAGAATG
AGGCGGAGGCCCGAAAGCAGCAGTATATCTTGGAAGGGGAGGGGGAGGCG
AAGGCGATTCGGTTGAAGGCGGAGGCATTCGCTGAGTCGATACGGGTGGT
GGGCCAGAGCTTGGGGGGGGAGCAGGGGCAGGATGCAGCCCAGTTGCAGA
TAGCGAAAGACTATATCGGTATGTATGGCCTGATGGGGAGTCAGAGCCAC
ACGATGGTCTTTTCGGAGCGTCCGGGGGATGTGAATGCCCTGTTCGCCCA
GGCGGCCTTGGCGTTGCAGGCGGCTGGGAAGAGCTCGGTGAATGGGAATG
CGCCGAGTCCTACGAGTGTTGTCCCCACGCCCGGGTATCTGGGCGAGCGG
GGGTTTGGTGGCGGGGGGATGGGGAAGGGAGGAGGGAGAGCGCGGATGGG
ACCTGGAGCAGGGGAGGAGACGAATGAGAGTTAA back to top
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