jgi.p|Nanoce1779_2|571709, mRNA_1317 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571709
Unique NamemRNA_1317
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1007
Alignment locationscaffold_1:259323..260329 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571795
TrackFilteredModels2
ProteinId571709
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:259323..260329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571709gene_1317Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571709mRNA_1317-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1317CDS_1317Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1317 ID=mRNA_1317|Name=jgi.p|Nanoce1779_2|571709|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp
AAGGGAGGGAAGGAGGGGGACGGAGAAGGGATGGATGTAAGGGATTTGGC
CTTGAATTTTGAGGTGGTGGTGGAGGATGAGGAGAGACTGCTACCCACGG
ATGAGGCAGCAGTGGAGCTGGTTCCAGGGGGGAAGCACGTGGCAGTGACG
AATGAGAATGTGTTTCGGTACATACAGCTAGTCGCCAATTACAAGCTCAA
TATCGAGATCAACGCCCAAGTCCAAGCTTTCCTGCGAGGGTTTCGCGACT
TGATCCCCATGCCCTGGCTCCGGATGTTTGGGGCGGAGGAACTCCAAATC
CTGTTGACGGGGGAAAAACGAGCGATTGACATCGAGAATTTACGGGCCCA
CACGCGTTATTCAGGTGGGTATCATCCAACTCAGCCCATCATTCAGTGGT
TCTGGGAGGCGCTGCGCAGCTACACCCCGGACGAGCAGAGTGCGTTCTTG
ATGTTTGTCACCTCGTGTTCACGCCAGCCATTGCTGGGCTTCCAGTGTTT
GAATCCACCTATGTGTATTCAGCGGGTGCCCTTGACAGCAGAGGGAGGGG
ATCGATTACCCTCCTCGGCGACGTGTATGAATTTGTTGAAGCTGCCCGCG
TACAGCACACCGGAAATGTTAAGAGAGAAATTGCTGTATGCCATCTCGGC
CGGAGCAGGATTTGAGCTGTCGTAGGTTAGAAGAAGGACAGATTGAAGGA
GGGTGCAAGGAGAGAAGTATAACGGATAAGGTCATGCTCTGCATTGTTGT
GGTTGCTAGGTGGGTGTTGGTGTTGAAGGTTGCGCAGAATAGAGGACAGT
AAACCAGCTGTCAGTAGTACAGCACTTTTTACGCTTGATGTGTATAGGCA
CGAAAAAGGTGTATGGAAGAGGAAATGAAAAATGAGAGCAAAATCATCAC
CAGCAGCAGCAGCGTCAGTATAAAGAAACGCCCCATAAAGTCCTCAATCA
GAACAGAGAAGAGTACATGTACAACGAAAAGGAGAAGAAAAAAATTAAAA
TAATAAG
back to top

protein sequence of jgi.p|Nanoce1779_2|571709

>mRNA_1317-protein ID=mRNA_1317-protein|Name=jgi.p|Nanoce1779_2|571709|organism=Nannochloropsis oceanica|type=polypeptide|length=215bp
MDVRDLALNFEVVVEDEERLLPTDEAAVELVPGGKHVAVTNENVFRYIQL
VANYKLNIEINAQVQAFLRGFRDLIPMPWLRMFGAEELQILLTGEKRAID
IENLRAHTRYSGGYHPTQPIIQWFWEALRSYTPDEQSAFLMFVTSCSRQP
LLGFQCLNPPMCIQRVPLTAEGGDRLPSSATCMNLLKLPAYSTPEMLREK
LLYAISAGAGFELS*
back to top

mRNA from alignment at scaffold_1:259323..260329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1317 ID=mRNA_1317|Name=jgi.p|Nanoce1779_2|571709|organism=Nannochloropsis oceanica|type=mRNA|length=1007bp|location=Sequence derived from alignment at scaffold_1:259323..260329- (Nannochloropsis oceanica)
AAGGGAGGGAAGGAGGGGGACGGAGAAGGGATGGATGTAAGGGATTTGGC
CTTGAATTTTGAGGTGGTGGTGGAGGATGAGGAGAGACTGCTACCCACGG
ATGAGGCAGCAGTGGAGCTGGTTCCAGGGGGGAAGCACGTGGCAGTGACG
AATGAGAATGTGTTTCGGTACATACAGCTAGTCGCCAATTACAAGCTCAA
TATCGAGATCAACGCCCAAGTCCAAGCTTTCCTGCGAGGGTTTCGCGACT
TGATCCCCATGCCCTGGCTCCGGATGTTTGGGGCGGAGGAACTCCAAATC
CTGTTGACGGGGGAAAAACGAGCGATTGACATCGAGAATTTACGGGCCCA
CACGCGTTATTCAGGTGGGTATCATCCAACTCAGCCCATCATTCAGTGGT
TCTGGGAGGCGCTGCGCAGCTACACCCCGGACGAGCAGAGTGCGTTCTTG
ATGTTTGTCACCTCGTGTTCACGCCAGCCATTGCTGGGCTTCCAGTGTTT
GAATCCACCTATGTGTATTCAGCGGGTGCCCTTGACAGCAGAGGGAGGGG
ATCGATTACCCTCCTCGGCGACGTGTATGAATTTGTTGAAGCTGCCCGCG
TACAGCACACCGGAAATGTTAAGAGAGAAATTGCTGTATGCCATCTCGGC
CGGAGCAGGATTTGAGCTGTCGTAGGTTAGAAGAAGGACAGATTGAAGGA
GGGTGCAAGGAGAGAAGTATAACGGATAAGGTCATGCTCTGCATTGTTGT
GGTTGCTAGGTGGGTGTTGGTGTTGAAGGTTGCGCAGAATAGAGGACAGT
AAACCAGCTGTCAGTAGTACAGCACTTTTTACGCTTGATGTGTATAGGCA
CGAAAAAGGTGTATGGAAGAGGAAATGAAAAATGAGAGCAAAATCATCAC
CAGCAGCAGCAGCGTCAGTATAAAGAAACGCCCCATAAAGTCCTCAATCA
GAACAGAGAAGAGTACATGTACAACGAAAAGGAGAAGAAAAAAATTAAAA
TAATAAG
back to top

Coding sequence (CDS) from alignment at scaffold_1:259323..260329-

>mRNA_1317 ID=mRNA_1317|Name=jgi.p|Nanoce1779_2|571709|organism=Nannochloropsis oceanica|type=CDS|length=645bp|location=Sequence derived from alignment at scaffold_1:259323..260329- (Nannochloropsis oceanica)
ATGGATGTAAGGGATTTGGCCTTGAATTTTGAGGTGGTGGTGGAGGATGA
GGAGAGACTGCTACCCACGGATGAGGCAGCAGTGGAGCTGGTTCCAGGGG
GGAAGCACGTGGCAGTGACGAATGAGAATGTGTTTCGGTACATACAGCTA
GTCGCCAATTACAAGCTCAATATCGAGATCAACGCCCAAGTCCAAGCTTT
CCTGCGAGGGTTTCGCGACTTGATCCCCATGCCCTGGCTCCGGATGTTTG
GGGCGGAGGAACTCCAAATCCTGTTGACGGGGGAAAAACGAGCGATTGAC
ATCGAGAATTTACGGGCCCACACGCGTTATTCAGGTGGGTATCATCCAAC
TCAGCCCATCATTCAGTGGTTCTGGGAGGCGCTGCGCAGCTACACCCCGG
ACGAGCAGAGTGCGTTCTTGATGTTTGTCACCTCGTGTTCACGCCAGCCA
TTGCTGGGCTTCCAGTGTTTGAATCCACCTATGTGTATTCAGCGGGTGCC
CTTGACAGCAGAGGGAGGGGATCGATTACCCTCCTCGGCGACGTGTATGA
ATTTGTTGAAGCTGCCCGCGTACAGCACACCGGAAATGTTAAGAGAGAAA
TTGCTGTATGCCATCTCGGCCGGAGCAGGATTTGAGCTGTCGTAG
back to top
Synonyms
Publications