jgi.p|Nanoce1779_2|571708, mRNA_1316 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571708
Unique NamemRNA_1316
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length647
Alignment locationscaffold_1:258653..259299 +

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Properties
Property NameValue
TranscriptId571794
TrackFilteredModels2
ProteinId571708
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:258653..259299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571708gene_1316Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571708mRNA_1316-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1316CDS_1316Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1316 ID=mRNA_1316|Name=jgi.p|Nanoce1779_2|571708|organism=Nannochloropsis oceanica|type=mRNA|length=647bp
CAACAGCAGGAAAGGAAAATGCTCGCAGCTAAAATCCGCCGGGTGGCTGG
GACCGCTATCACCAAAACTACTACCGCCGCAGCAGCAAGCGCTTTAACAA
GAAAACCACGATTAGTATACTTCCATGGTACCACGGCTGTGGCGCACGGC
AGTGGCAAGGATCTGAATGACGCGCCGCGCATTACATTGCATTGGATCGG
CAAGAAAGGGGAGGAGTTCAGCACGGACGGGATCGTGGGCGAAAGCATCC
TGGACGCGGCGCACCGGCATGAAGTGGAGTTGGAAGGGGCGTGCGAAGGT
GTGTGTGCATGTTCAACATGCCACGTAATTTTGGAAGACCCTGTATTTGA
GAAGCTGGAAGACCCATCGGAGGAGGAAGAGGATATGCTAGATCAGGCGT
TTGGGCTCACTCCTACGTCGCGGCTAGGGTGTCAGGTGGAATTGACTCAA
GTCCTGGATGGCATAAGGATTAAACTACCAACTGCGACGCGTAATTTCTA
TATTGATGGGCATGTGCCGAAGCCACATTAGATCTCGACGCTTCGTTTGT
TGTTGGAGGAGGGGTGGGGGGCAGGGAAAAGGCAATGTCAAGACTGAAGA
AACATAGATAAATGTGGTAAAAAAATGTCAGAAATCAAATATGCATG
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protein sequence of jgi.p|Nanoce1779_2|571708

>mRNA_1316-protein ID=mRNA_1316-protein|Name=jgi.p|Nanoce1779_2|571708|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MLAAKIRRVAGTAITKTTTAAAASALTRKPRLVYFHGTTAVAHGSGKDLN
DAPRITLHWIGKKGEEFSTDGIVGESILDAAHRHEVELEGACEGVCACST
CHVILEDPVFEKLEDPSEEEEDMLDQAFGLTPTSRLGCQVELTQVLDGIR
IKLPTATRNFYIDGHVPKPH*
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mRNA from alignment at scaffold_1:258653..259299+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1316 ID=mRNA_1316|Name=jgi.p|Nanoce1779_2|571708|organism=Nannochloropsis oceanica|type=mRNA|length=647bp|location=Sequence derived from alignment at scaffold_1:258653..259299+ (Nannochloropsis oceanica)
CAACAGCAGGAAAGGAAAATGCTCGCAGCTAAAATCCGCCGGGTGGCTGG
GACCGCTATCACCAAAACTACTACCGCCGCAGCAGCAAGCGCTTTAACAA
GAAAACCACGATTAGTATACTTCCATGGTACCACGGCTGTGGCGCACGGC
AGTGGCAAGGATCTGAATGACGCGCCGCGCATTACATTGCATTGGATCGG
CAAGAAAGGGGAGGAGTTCAGCACGGACGGGATCGTGGGCGAAAGCATCC
TGGACGCGGCGCACCGGCATGAAGTGGAGTTGGAAGGGGCGTGCGAAGGT
GTGTGTGCATGTTCAACATGCCACGTAATTTTGGAAGACCCTGTATTTGA
GAAGCTGGAAGACCCATCGGAGGAGGAAGAGGATATGCTAGATCAGGCGT
TTGGGCTCACTCCTACGTCGCGGCTAGGGTGTCAGGTGGAATTGACTCAA
GTCCTGGATGGCATAAGGATTAAACTACCAACTGCGACGCGTAATTTCTA
TATTGATGGGCATGTGCCGAAGCCACATTAGATCTCGACGCTTCGTTTGT
TGTTGGAGGAGGGGTGGGGGGCAGGGAAAAGGCAATGTCAAGACTGAAGA
AACATAGATAAATGTGGTAAAAAAATGTCAGAAATCAAATATGCATG
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Coding sequence (CDS) from alignment at scaffold_1:258653..259299+

>mRNA_1316 ID=mRNA_1316|Name=jgi.p|Nanoce1779_2|571708|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_1:258653..259299+ (Nannochloropsis oceanica)
ATGCTCGCAGCTAAAATCCGCCGGGTGGCTGGGACCGCTATCACCAAAAC
TACTACCGCCGCAGCAGCAAGCGCTTTAACAAGAAAACCACGATTAGTAT
ACTTCCATGGTACCACGGCTGTGGCGCACGGCAGTGGCAAGGATCTGAAT
GACGCGCCGCGCATTACATTGCATTGGATCGGCAAGAAAGGGGAGGAGTT
CAGCACGGACGGGATCGTGGGCGAAAGCATCCTGGACGCGGCGCACCGGC
ATGAAGTGGAGTTGGAAGGGGCGTGCGAAGGTGTGTGTGCATGTTCAACA
TGCCACGTAATTTTGGAAGACCCTGTATTTGAGAAGCTGGAAGACCCATC
GGAGGAGGAAGAGGATATGCTAGATCAGGCGTTTGGGCTCACTCCTACGT
CGCGGCTAGGGTGTCAGGTGGAATTGACTCAAGTCCTGGATGGCATAAGG
ATTAAACTACCAACTGCGACGCGTAATTTCTATATTGATGGGCATGTGCC
GAAGCCACATTAG
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Synonyms
Publications