jgi.p|Nanoce1779_2|548920, mRNA_1314 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|548920
Unique NamemRNA_1314
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length494
Alignment locationscaffold_1:256222..256715 -

Link to JBrowse

Properties
Property NameValue
TranscriptId549006
TrackFilteredModels2
ProteinId548920
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:256222..256715 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|548920gene_1314Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|548920mRNA_1314-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1314CDS_1314Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1314 ID=mRNA_1314|Name=jgi.p|Nanoce1779_2|548920|organism=Nannochloropsis oceanica|type=mRNA|length=494bp
ATGCAGAAAATTGGAGGGAGGAGGGAAGGCAGGGAGGGAGGGTGGGAGAG
GGGGGATGCCAGGTTGGCCGCGTTGCATCGGTTGAGGTACGGGGATAGTC
GGGAGGAGGGAAGAAAGGAGAGGAGGGAGGAAGGAACGCATGGACTAAAG
GTACAAAGTTCCCCTTTTCCGTACCAACCGAAGGATAGCGATTGGGAGGT
GGCCGTCCGATCATACCCGGAGCGGGGTGGATGGGGGAGGTTGATCAGAA
ACCCAAAGAAGAAGAAGGGGCATGTGTATTTGGACATGTGTTCGCCCCAA
GGGAAATTAGAACGGATTGTTGTGGCAAGAAAAGCGGCCAAGCCCGTGCC
TGGGAAATACGTGGCGGCGAGGAAAGCGCAGTGGGGGGGCTTATGGCCGT
TTCCAGATGTGTGAGGAGGAGGGCAGGGAGGGAAGGAGGGAGGAAGGGAG
GGAGGTATGAAAGTACTTTGGACTGTGACATGGTAATACAAAGC
back to top

protein sequence of jgi.p|Nanoce1779_2|548920

>mRNA_1314-protein ID=mRNA_1314-protein|Name=jgi.p|Nanoce1779_2|548920|organism=Nannochloropsis oceanica|type=polypeptide|length=138bp
MQKIGGRREGREGGWERGDARLAALHRLRYGDSREEGRKERREEGTHGLK
VQSSPFPYQPKDSDWEVAVRSYPERGGWGRLIRNPKKKKGHVYLDMCSPQ
GKLERIVVARKAAKPVPGKYVAARKAQWGGLWPFPDV*
back to top

mRNA from alignment at scaffold_1:256222..256715-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1314 ID=mRNA_1314|Name=jgi.p|Nanoce1779_2|548920|organism=Nannochloropsis oceanica|type=mRNA|length=494bp|location=Sequence derived from alignment at scaffold_1:256222..256715- (Nannochloropsis oceanica)
ATGCAGAAAATTGGAGGGAGGAGGGAAGGCAGGGAGGGAGGGTGGGAGAG
GGGGGATGCCAGGTTGGCCGCGTTGCATCGGTTGAGGTACGGGGATAGTC
GGGAGGAGGGAAGAAAGGAGAGGAGGGAGGAAGGAACGCATGGACTAAAG
GTACAAAGTTCCCCTTTTCCGTACCAACCGAAGGATAGCGATTGGGAGGT
GGCCGTCCGATCATACCCGGAGCGGGGTGGATGGGGGAGGTTGATCAGAA
ACCCAAAGAAGAAGAAGGGGCATGTGTATTTGGACATGTGTTCGCCCCAA
GGGAAATTAGAACGGATTGTTGTGGCAAGAAAAGCGGCCAAGCCCGTGCC
TGGGAAATACGTGGCGGCGAGGAAAGCGCAGTGGGGGGGCTTATGGCCGT
TTCCAGATGTGTGAGGAGGAGGGCAGGGAGGGAAGGAGGGAGGAAGGGAG
GGAGGTATGAAAGTACTTTGGACTGTGACATGGTAATACAAAGC
back to top

Coding sequence (CDS) from alignment at scaffold_1:256222..256715-

>mRNA_1314 ID=mRNA_1314|Name=jgi.p|Nanoce1779_2|548920|organism=Nannochloropsis oceanica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_1:256222..256715- (Nannochloropsis oceanica)
ATGCAGAAAATTGGAGGGAGGAGGGAAGGCAGGGAGGGAGGGTGGGAGAG
GGGGGATGCCAGGTTGGCCGCGTTGCATCGGTTGAGGTACGGGGATAGTC
GGGAGGAGGGAAGAAAGGAGAGGAGGGAGGAAGGAACGCATGGACTAAAG
GTACAAAGTTCCCCTTTTCCGTACCAACCGAAGGATAGCGATTGGGAGGT
GGCCGTCCGATCATACCCGGAGCGGGGTGGATGGGGGAGGTTGATCAGAA
ACCCAAAGAAGAAGAAGGGGCATGTGTATTTGGACATGTGTTCGCCCCAA
GGGAAATTAGAACGGATTGTTGTGGCAAGAAAAGCGGCCAAGCCCGTGCC
TGGGAAATACGTGGCGGCGAGGAAAGCGCAGTGGGGGGGCTTATGGCCGT
TTCCAGATGTGTGA
back to top
Synonyms
Publications