jgi.p|Nanoce1779_2|667278, mRNA_1313 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|667278
Unique Name	mRNA_1313
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1895
Alignment location	scaffold_1:254191..256186 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	667364
Track	FilteredModels2
ProteinId	667278

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:254191..256186 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667278	gene_1313	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|667278	mRNA_1313-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1313	CDS_1313	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:254191..256186+
coding sequence from alignment at scaffold_1:254191..256186+

mRNA sequence

>mRNA_1313 ID=mRNA_1313|Name=jgi.p|Nanoce1779_2|667278|organism=Nannochloropsis oceanica|type=mRNA|length=1895bp
ACAGGCAGGTCAAACGCTCCTGGTCCTTGCCTCTCCTCCTACAGCAAGCC
CCGCTCCCTCTCCTCCGCCCCGGCGCGACCGTTCTCTTACGTCCCACTTC
GACCATGCCTACCAAACGCTTCATGGCCGACCTTCTCGACGCGCTACCGA
GCATTATCTCGTCCTCCTCGTCGTTCTACAAAGTAGAAGCCAGTGATGGC
AAAGACACGGTCAGTATGGTCTTTCTTGCTTTTCTAGTCAGTGGCATCAC
CTGGAAGCTCTGCCTGGCCGTGGATCGCGCTTTGAAAGTCCGTCGGATGA
ACATGCCTGTCGTCCCCGGCGGCCTGCCCTTCCTTGGACAAGTCCTCGAA
CTAATCCGCATGCCCCCGTGGGATTTAATGGTCCAATGGATGAAGAAGCT
TGGTCCTATTTACAGATTCACTCTCTTTGGGGAGAGCTGCGTGGTGGTGG
CTGACCCGGCATTGCTCCGGGAGGTACTCCAAACGAGTATGAAGGCATTT
CAGAAGGACCTGGACTTCACCTATAAACCCTTCATGCCTCTCCTGGGCAC
GGGCCTCGTCACGTCAGAAGGCCAGCTCTGGTACACCCAACGAGCCATGG
TCTCGGCTGTCTTTCGCATTGAAATTTTGGAGATTATCCCTCACATTGCG
AAGCGCGCCGTGGAACGCATGTGCAGCAAGCTGGAGGAAGTGCGAGGCAC
AGGTACCCCTATTGAGATTGGGGAAATGTTCCGCCACCTCACCTTACAAG
TCATCGCCGAAGCCATCCTCAGCCTCTCCCCCGAGGAATCTGATAAGACC
TTCGCCAAAATGTACCTACCGATCGTGACGGAAGGCAACCTAAGGACGTG
GTATCCTTATCGCGCCTATCTCCCTACTCCTGCCAACTTTGCCTTCCACC
GACATGTGAAGGTCCTCAACGACTACATCACCAGCATCATCGAGAAGCGA
TGGACTATTCGACAGCTCGAGAGCAAGCTTTCTATCCCAACGAACAAACG
GCAACAAGATATTCTCGATCGTATTTTGAGTGGGGTCGATACCCATACCT
GGTCTCCCTCGGTAGTTCGTCAGATCCGCGACGAGATTAAAACGTTTATT
CTGGCAGGACACGAGACGTCCGCCTCAATGCTGACATGGGCGTTGTATGA
ACTGACGCAAAGTGAAGAAATCACGAAGGAGGTCATGGGAGAGGCAGAGA
GGGTTTTTGGTAAGGGGGCAACGGCCATGACGCCGTTGCCTGCAAGTGAG
ACGCTGGTGGGTTTGGCTTTCACGCAAAGTTGTCTGAAAGAGACATTGAG
GAAGTATAGCGTGGTGCCGATCGTTACAAGGGAAACGGTGAGAGACGTGG
GATTAGAAGGAGGGAAGTACCTGATTCCGAAGGGCACGAGGATGATGATA
TTGATTCAGGGCGTGCATCACAGGGCTGACATATGGCCTGCCCCTTTGGA
GTTCACCCCTCAGAGATTCCAGGAGGCGATGCCGAAGCCGTTTACGTTCT
TACCGTTCATCGATGGCCCACGGAATTGCTTAGGGCAGCATCTGGCCCTG
TTGGAGACGAAGATTGTGCTGGCGACGTTGGTGCAACGGTTCCGGTTTGA
GGCGGTAGAGGGGGAGGGAGGGAGGGAGGCTGGGAGGAAGCACCCGAGCA
TGGTGCCGGTCATTCCGGACGATCCAGGGTTGATGGTGTTGGTGACGTAG
CGAGGGAGGAAGGGAGACAGGCATGGGAAAAATAATTGAAAGAAAGTATG
CACACGATGTAGTCTTACAGCGAGGGGGGGGCGGGCGGCAGGGGCAAGAG
TAGCAGCAGAGGGCAAGAAGAAAAGTTGACAAAGTAACGTCGTGACGAGA
TAGTTTGGTTCCAATTACCAAAAAAGCAACTTCAGACAAGCATGG

protein sequence of jgi.p|Nanoce1779_2|667278

>mRNA_1313-protein ID=mRNA_1313-protein|Name=jgi.p|Nanoce1779_2|667278|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MPTKRFMADLLDALPSIISSSSSFYKVEASDGKDTVSMVFLAFLVSGITW
KLCLAVDRALKVRRMNMPVVPGGLPFLGQVLELIRMPPWDLMVQWMKKLG
PIYRFTLFGESCVVVADPALLREVLQTSMKAFQKDLDFTYKPFMPLLGTG
LVTSEGQLWYTQRAMVSAVFRIEILEIIPHIAKRAVERMCSKLEEVRGTG
TPIEIGEMFRHLTLQVIAEAILSLSPEESDKTFAKMYLPIVTEGNLRTWY
PYRAYLPTPANFAFHRHVKVLNDYITSIIEKRWTIRQLESKLSIPTNKRQ
QDILDRILSGVDTHTWSPSVVRQIRDEIKTFILAGHETSASMLTWALYEL
TQSEEITKEVMGEAERVFGKGATAMTPLPASETLVGLAFTQSCLKETLRK
YSVVPIVTRETVRDVGLEGGKYLIPKGTRMMILIQGVHHRADIWPAPLEF
TPQRFQEAMPKPFTFLPFIDGPRNCLGQHLALLETKIVLATLVQRFRFEA
VEGEGGREAGRKHPSMVPVIPDDPGLMVLVT*

mRNA from alignment at scaffold_1:254191..256186+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1313 ID=mRNA_1313|Name=jgi.p|Nanoce1779_2|667278|organism=Nannochloropsis oceanica|type=mRNA|length=1996bp|location=Sequence derived from alignment at scaffold_1:254191..256186+ (Nannochloropsis oceanica)
ACAGGCAGGTCAAACGCTCCTGGTCCTTGCCTCTCCTCCTACAGCAAGCC
CCGCTCCCTCTCCTCCGCCCCGGCGCGACCGTTCTCTTACGTCCCACTTC
GACCATGCCTACCAAACGCTTCATGGCCGACCTTCTCGACGCGCTACCGA
GCATTATCTCGTCCTCCTCGTCGTTCTACAAAGTAGAAGCCAGTGATGGC
AAAGGTAAGACCAGCAGACCAGCAAATTCTTCCCCCTTCTCAGTCGAACA
AAGAAGATCTGATGAGCTCCTTCCTCTGAAACCTACCACACCACCACCCT
CGTAGACACGGTCAGTATGGTCTTTCTTGCTTTTCTAGTCAGTGGCATCA
CCTGGAAGCTCTGCCTGGCCGTGGATCGCGCTTTGAAAGTCCGTCGGATG
AACATGCCTGTCGTCCCCGGCGGCCTGCCCTTCCTTGGACAAGTCCTCGA
ACTAATCCGCATGCCCCCGTGGGATTTAATGGTCCAATGGATGAAGAAGC
TTGGTCCTATTTACAGATTCACTCTCTTTGGGGAGAGCTGCGTGGTGGTG
GCTGACCCGGCATTGCTCCGGGAGGTACTCCAAACGAGTATGAAGGCATT
TCAGAAGGACCTGGACTTCACCTATAAACCCTTCATGCCTCTCCTGGGCA
CGGGCCTCGTCACGTCAGAAGGCCAGCTCTGGTACACCCAACGAGCCATG
GTCTCGGCTGTCTTTCGCATTGAAATTTTGGAGATTATCCCTCACATTGC
GAAGCGCGCCGTGGAACGCATGTGCAGCAAGCTGGAGGAAGTGCGAGGCA
CAGGTACCCCTATTGAGATTGGGGAAATGTTCCGCCACCTCACCTTACAA
GTCATCGCCGAAGCCATCCTCAGCCTCTCCCCCGAGGAATCTGATAAGAC
CTTCGCCAAAATGTACCTACCGATCGTGACGGAAGGCAACCTAAGGACGT
GGTATCCTTATCGCGCCTATCTCCCTACTCCTGCCAACTTTGCCTTCCAC
CGACATGTGAAGGTCCTCAACGACTACATCACCAGCATCATCGAGAAGCG
ATGGACTATTCGACAGCTCGAGAGCAAGCTTTCTATCCCAACGAACAAAC
GGCAACAAGATATTCTCGATCGTATTTTGAGTGGGGTCGATACCCATACC
TGGTCTCCCTCGGTAGTTCGTCAGATCCGCGACGAGATTAAAACGTTTAT
TCTGGCAGGACACGAGACGTCCGCCTCAATGCTGACATGGGCGTTGTATG
AACTGACGCAAAGTGAAGAAATCACGAAGGAGGTCATGGGAGAGGCAGAG
AGGGTTTTTGGTAAGGGGGCAACGGCCATGACGCCGTTGCCTGCAAGTGA
GACGCTGGTGGGTTTGGCTTTCACGCAAAGTTGTCTGAAAGAGACATTGA
GGAAGTATAGCGTGGTGCCGATCGTTACAAGGGAAACGGTGAGAGACGTG
GGATTAGAAGGAGGGAAGTACCTGATTCCGAAGGGCACGAGGATGATGAT
ATTGATTCAGGGCGTGCATCACAGGGCTGACATATGGCCTGCCCCTTTGG
AGTTCACCCCTCAGAGATTCCAGGAGGCGATGCCGAAGCCGTTTACGTTC
TTACCGTTCATCGATGGCCCACGGAATTGCTTAGGGCAGCATCTGGCCCT
GTTGGAGACGAAGATTGTGCTGGCGACGTTGGTGCAACGGTTCCGGTTTG
AGGCGGTAGAGGGGGAGGGAGGGAGGGAGGCTGGGAGGAAGCACCCGAGC
ATGGTGCCGGTCATTCCGGACGATCCAGGGTTGATGGTGTTGGTGACGTA
GCGAGGGAGGAAGGGAGACAGGCATGGGAAAAATAATTGAAAGAAAGTAT
GCACACGATGTAGTCTTACAGCGAGGGGGGGGCGGGCGGCAGGGGCAAGA
GTAGCAGCAGAGGGCAAGAAGAAAAGTTGACAAAGTAACGTCGTGACGAG
ATAGTTTGGTTCCAATTACCAAAAAAGCAACTTCAGACAAGCATGG

Coding sequence (CDS) from alignment at scaffold_1:254191..256186+

>mRNA_1313 ID=mRNA_1313|Name=jgi.p|Nanoce1779_2|667278|organism=Nannochloropsis oceanica|type=CDS|length=3192bp|location=Sequence derived from alignment at scaffold_1:254191..256186+ (Nannochloropsis oceanica)
ATGCCTACCAAACGCTTCATGGCCGACCTTCTCGACGCGCTACCGAGCAT
TATCTCGTCCTCCTCGTCGTTCTACAAAGTAGAAGCCAGTGATGGCAAAG
ACACGGTCAGTATGGTCTTTCTTGCTTTTCTAGTCAGTGGCATCACCTGG
AAGCTCTGCCTGGCCGTGGATCGCGCTTTGAAAGTCCGTCGGATGAACAT
GCCTGTCGTCCCCGGCGGCCTGCCCTTCCTTGGACAAGTCCTCGAACTAA
TCCGCATGCCCCCGTGGGATTTAATGGTCCAATGGATGAAGAAGCTTGGT
CCTATTTACAGATTCACTCTCTTTGGGGAGAGCTGCGTGGTGGTGGCTGA
CCCGGCATTGCTCCGGGAGGTACTCCAAACGAGTATGAAGGCATTTCAGA
AGGACCTGGACTTCACCTATAAACCCTTCATGCCTCTCCTGGGCACGGGC
CTCGTCACGTCAGAAGGCCAGCTCTGGTACACCCAACGAGCCATGGTCTC
GGCTGTCTTTCGCATTGAAATTTTGGAGATTATCCCTCACATTGCGAAGC
GCGCCGTGGAACGCATGTGCAGCAAGCTGGAGGAAGTGCGAGGCACAGGT
ACCCCTATTGAGATTGGGGAAATGTTCCGCCACCTCACCTTACAAGTCAT
CGCCGAAGCCATCCTCAGCCTCTCCCCCGAGGAATCTGATAAGACCTTCG
CCAAAATGTACCTACCGATCGTGACGGAAGGCAACCTAAGGACGTGGTAT
CCTTATCGCGCCTATCTCCCTACTCCTGCCAACTTTGCCTTCCACCGACA
TGTGAAGGTCCTCAACGACTACATCACCAGCATCATCGAGAAGCGATGGA
CTATTCGACAGCTCGAGAGCAAGCTTTCTATCCCAACGAACAAACGGCAA
CAAGATATTCTCGATCGTATTTTGAGTGGGGTCGATACCCATACCTGGTC
TCCCTCGGTAGTTCGTCAGATCCGCGACGAGATTAAAACGTTTATTCTGG
CAGGACACGAGACGTCCGCCTCAATGCTGACATGGGCGTTGTATGAACTG
ACGCAAAGTGAAGAAATCACGAAGGAGGTCATGGGAGAGGCAGAGAGGGT
TTTTGGTAAGGGGGCAACGGCCATGACGCCGTTGCCTGCAAGTGAGACGC
TGGTGGGTTTGGCTTTCACGCAAAGTTGTCTGAAAGAGACATTGAGGAAG
TATAGCGTGGTGCCGATCGTTACAAGGGAAACGGTGAGAGACGTGGGATT
AGAAGGAGGGAAGTACCTGATTCCGAAGGGCACGAGGATGATGATATTGA
TTCAGGGCGTGCATCACAGGGCTGACATATGGCCTGCCCCTTTGGAGTTC
ACCCCTCAGAGATTCCAGGAGGCGATGCCGAAGCCGTTTACGTTCTTACC
GTTCATCGATGGCCCACGGAATTGCTTAGGGCAGCATCTGGCCCTGTTGG
AGACGAAGATTGTGCTGGCGACGTTGGTGCAACGGTTCCGGTTTGAGGCG
GTAGAGGGGGAGGGAGGGAGGGAGGCTGGGAGGAAGCACCCGAGCATGGT
GCCGGTCATTCCGGACGATCCAGGGTTGATGGTGTTGGTGACGTAGATGC
CTACCAAACGCTTCATGGCCGACCTTCTCGACGCGCTACCGAGCATTATC
TCGTCCTCCTCGTCGTTCTACAAAGTAGAAGCCAGTGATGGCAAAGACAC
GGTCAGTATGGTCTTTCTTGCTTTTCTAGTCAGTGGCATCACCTGGAAGC
TCTGCCTGGCCGTGGATCGCGCTTTGAAAGTCCGTCGGATGAACATGCCT
GTCGTCCCCGGCGGCCTGCCCTTCCTTGGACAAGTCCTCGAACTAATCCG
CATGCCCCCGTGGGATTTAATGGTCCAATGGATGAAGAAGCTTGGTCCTA
TTTACAGATTCACTCTCTTTGGGGAGAGCTGCGTGGTGGTGGCTGACCCG
GCATTGCTCCGGGAGGTACTCCAAACGAGTATGAAGGCATTTCAGAAGGA
CCTGGACTTCACCTATAAACCCTTCATGCCTCTCCTGGGCACGGGCCTCG
TCACGTCAGAAGGCCAGCTCTGGTACACCCAACGAGCCATGGTCTCGGCT
GTCTTTCGCATTGAAATTTTGGAGATTATCCCTCACATTGCGAAGCGCGC
CGTGGAACGCATGTGCAGCAAGCTGGAGGAAGTGCGAGGCACAGGTACCC
CTATTGAGATTGGGGAAATGTTCCGCCACCTCACCTTACAAGTCATCGCC
GAAGCCATCCTCAGCCTCTCCCCCGAGGAATCTGATAAGACCTTCGCCAA
AATGTACCTACCGATCGTGACGGAAGGCAACCTAAGGACGTGGTATCCTT
ATCGCGCCTATCTCCCTACTCCTGCCAACTTTGCCTTCCACCGACATGTG
AAGGTCCTCAACGACTACATCACCAGCATCATCGAGAAGCGATGGACTAT
TCGACAGCTCGAGAGCAAGCTTTCTATCCCAACGAACAAACGGCAACAAG
ATATTCTCGATCGTATTTTGAGTGGGGTCGATACCCATACCTGGTCTCCC
TCGGTAGTTCGTCAGATCCGCGACGAGATTAAAACGTTTATTCTGGCAGG
ACACGAGACGTCCGCCTCAATGCTGACATGGGCGTTGTATGAACTGACGC
AAAGTGAAGAAATCACGAAGGAGGTCATGGGAGAGGCAGAGAGGGTTTTT
GGTAAGGGGGCAACGGCCATGACGCCGTTGCCTGCAAGTGAGACGCTGGT
GGGTTTGGCTTTCACGCAAAGTTGTCTGAAAGAGACATTGAGGAAGTATA
GCGTGGTGCCGATCGTTACAAGGGAAACGGTGAGAGACGTGGGATTAGAA
GGAGGGAAGTACCTGATTCCGAAGGGCACGAGGATGATGATATTGATTCA
GGGCGTGCATCACAGGGCTGACATATGGCCTGCCCCTTTGGAGTTCACCC
CTCAGAGATTCCAGGAGGCGATGCCGAAGCCGTTTACGTTCTTACCGTTC
ATCGATGGCCCACGGAATTGCTTAGGGCAGCATCTGGCCCTGTTGGAGAC
GAAGATTGTGCTGGCGACGTTGGTGCAACGGTTCCGGTTTGAGGCGGTAG
AGGGGGAGGGAGGGAGGGAGGCTGGGAGGAAGCACCCGAGCATGGTGCCG
GTCATTCCGGACGATCCAGGGTTGATGGTGTTGGTGACGTAG

Synonyms

Publications