jgi.p|Nanoce1779_2|571698, mRNA_1312 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571698
Unique NamemRNA_1312
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1442
Alignment locationscaffold_1:252533..254044 -

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Properties
Property NameValue
TranscriptId571784
TrackFilteredModels2
ProteinId571698
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:252533..254044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571698gene_1312Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571698mRNA_1312-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1312CDS_1312Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1312 ID=mRNA_1312|Name=jgi.p|Nanoce1779_2|571698|organism=Nannochloropsis oceanica|type=mRNA|length=1442bp
ACAGGCATAGCAGCAGTATCGGATTTTGGGGTAATGTAAAGCAGGCATAT
CCACTGCAGGGTTTTCCGCCTTTGCTGCAAAGCCAAACGTAAGCACTTGT
TCTTCCAGCTTTCCCACCCGCCCATCCAAAGCAGCCATGTGGCCCACTCT
CCGTCGCAGCCTATGCAGCACCATCAGAATACCACGCTCTACACCAGCTC
TTCCCACTGTCCACTTTAATCGTTCATTTGCCGCTGCGGCTCCATCCTCT
GATAGCGTGCCTCCTGCCGGGAGTCCGCGCGCCTCGGCCCGCTCTCCCTT
GGACGGGGGCAATGCCTCCATGAAAAAAATGTCGGTCCTTGACCTGTTAC
ACAAGAAACGAAAACATCAGCCCATCTCCATGGTTACGGCTTACGACTAC
CCTTCAGCCTTGCACGTGGACCTGGCCGGGATCGACATTGTCTTGTGCGG
TGACTCGGTAGCGATGGTCGAGCTGGGCTACCCCACCACCCAACCCGTCG
ACATGGAACAGATGCTTCACCATTGTAAAGCCGTCGCTCGAGGTGCAAAG
CGCTCCCTTATTGTAGGTGATATGCCTTTTGGCTCTTACGAAGTTTCCGA
AGAATTAGCCATGACAAATGCCTTCCGTTTTATCAAGGAAGGCTTCACAG
ACGCTGTCAAAATCGAAGGCGGACGAGACCGGGCCAATATCGTCCAGAAA
ATTGTCAAGGGAGGAATAGCAGTCATGGGACATATCGGCCTTACCCCCCA
AGCCATCTCAGTGCTGGGAGGGTTCCGCGCTCAGGGCCGCACGGCCGTCA
AGGCTCGGAGGCTGGTGGATGACGCGTTGGCCTTGCAAGACGCAGGGGCG
TTCGCGGTGGTAATTGAATGTGTCCCCGGCCCAGTCGCGCAAGCCATCAC
AAATGCCCTTGAGATCCCTACCATTGGAATAGGAGCAGGGCCGCACACGT
CGGGGCAGGTGTTGGTGTACCATGATATGTTGGGCATGACTTCCCATCCG
CACCACGAAGCGTTTGTGCCGAGATTCTGTAAGAGATATGCTCAGCTTGG
GGATGCGATACGATCGGGTTTGGAAGCATTTAAGAAGGACGTGGAGGAGG
GTACATTCCCTAGCGAGGCGTACAGTCCGTATAAGATGCCCAAGGAGGAA
TTGGATGCCTTCCTGACGTTGATGGCGAAAGACGCGGCGGTGAGGAAGGC
CCAGGCGGAGGAGGCGGCGGAACGATTGAAGCAGAGTGATGAGTATGAGC
AAATCAAGCTGTATTAGAGAAGTAGGTAGGTAGGGAAGCGGAATAAATCA
TGGGTCGTGAGGGAAAAGCTCAAATTTAAATGTGATAGGACAACGGGTAG
AGAGAGTGTGTGTGTGCCAATACAGACTGCAAAGACAGGATAAGAAGTAC
ACAACACGAAATGCCTATTGGAGAAAATATGCAGAGGTAGAG
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protein sequence of jgi.p|Nanoce1779_2|571698

>mRNA_1312-protein ID=mRNA_1312-protein|Name=jgi.p|Nanoce1779_2|571698|organism=Nannochloropsis oceanica|type=polypeptide|length=377bp
MWPTLRRSLCSTIRIPRSTPALPTVHFNRSFAAAAPSSDSVPPAGSPRAS
ARSPLDGGNASMKKMSVLDLLHKKRKHQPISMVTAYDYPSALHVDLAGID
IVLCGDSVAMVELGYPTTQPVDMEQMLHHCKAVARGAKRSLIVGDMPFGS
YEVSEELAMTNAFRFIKEGFTDAVKIEGGRDRANIVQKIVKGGIAVMGHI
GLTPQAISVLGGFRAQGRTAVKARRLVDDALALQDAGAFAVVIECVPGPV
AQAITNALEIPTIGIGAGPHTSGQVLVYHDMLGMTSHPHHEAFVPRFCKR
YAQLGDAIRSGLEAFKKDVEEGTFPSEAYSPYKMPKEELDAFLTLMAKDA
AVRKAQAEEAAERLKQSDEYEQIKLY*
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mRNA from alignment at scaffold_1:252533..254044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1312 ID=mRNA_1312|Name=jgi.p|Nanoce1779_2|571698|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at scaffold_1:252533..254044- (Nannochloropsis oceanica)
ACAGGCATAGCAGCAGTATCGGATTTTGGGGTAATGTAAAGCAGGCATAT
CCACTGCAGGTAACAGAGTGTCTCCAAACCATACTCTCAATACCTTTGTT
TCTAATTAAATCCACACAAAAAAAACCAGGGTTTTCCGCCTTTGCTGCAA
AGCCAAACGTAAGCACTTGTTCTTCCAGCTTTCCCACCCGCCCATCCAAA
GCAGCCATGTGGCCCACTCTCCGTCGCAGCCTATGCAGCACCATCAGAAT
ACCACGCTCTACACCAGCTCTTCCCACTGTCCACTTTAATCGTTCATTTG
CCGCTGCGGCTCCATCCTCTGATAGCGTGCCTCCTGCCGGGAGTCCGCGC
GCCTCGGCCCGCTCTCCCTTGGACGGGGGCAATGCCTCCATGAAAAAAAT
GTCGGTCCTTGACCTGTTACACAAGAAACGAAAACATCAGCCCATCTCCA
TGGTTACGGCTTACGACTACCCTTCAGCCTTGCACGTGGACCTGGCCGGG
ATCGACATTGTCTTGTGCGGTGACTCGGTAGCGATGGTCGAGCTGGGCTA
CCCCACCACCCAACCCGTCGACATGGAACAGATGCTTCACCATTGTAAAG
CCGTCGCTCGAGGTGCAAAGCGCTCCCTTATTGTAGGTGATATGCCTTTT
GGCTCTTACGAAGTTTCCGAAGAATTAGCCATGACAAATGCCTTCCGTTT
TATCAAGGAAGGCTTCACAGACGCTGTCAAAATCGAAGGCGGACGAGACC
GGGCCAATATCGTCCAGAAAATTGTCAAGGGAGGAATAGCAGTCATGGGA
CATATCGGCCTTACCCCCCAAGCCATCTCAGTGCTGGGAGGGTTCCGCGC
TCAGGGCCGCACGGCCGTCAAGGCTCGGAGGCTGGTGGATGACGCGTTGG
CCTTGCAAGACGCAGGGGCGTTCGCGGTGGTAATTGAATGTGTCCCCGGC
CCAGTCGCGCAAGCCATCACAAATGCCCTTGAGATCCCTACCATTGGAAT
AGGAGCAGGGCCGCACACGTCGGGGCAGGTGTTGGTGTACCATGATATGT
TGGGCATGACTTCCCATCCGCACCACGAAGCGTTTGTGCCGAGATTCTGT
AAGAGATATGCTCAGCTTGGGGATGCGATACGATCGGGTTTGGAAGCATT
TAAGAAGGACGTGGAGGAGGGTACATTCCCTAGCGAGGCGTACAGTCCGT
ATAAGATGCCCAAGGAGGAATTGGATGCCTTCCTGACGTTGATGGCGAAA
GACGCGGCGGTGAGGAAGGCCCAGGCGGAGGAGGCGGCGGAACGATTGAA
GCAGAGTGATGAGTATGAGCAAATCAAGCTGTATTAGAGAAGTAGGTAGG
TAGGGAAGCGGAATAAATCATGGGTCGTGAGGGAAAAGCTCAAATTTAAA
TGTGATAGGACAACGGGTAGAGAGAGTGTGTGTGTGCCAATACAGACTGC
AAAGACAGGATAAGAAGTACACAACACGAAATGCCTATTGGAGAAAATAT
GCAGAGGTAGAG
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Coding sequence (CDS) from alignment at scaffold_1:252533..254044-

>mRNA_1312 ID=mRNA_1312|Name=jgi.p|Nanoce1779_2|571698|organism=Nannochloropsis oceanica|type=CDS|length=1131bp|location=Sequence derived from alignment at scaffold_1:252533..254044- (Nannochloropsis oceanica)
ATGTGGCCCACTCTCCGTCGCAGCCTATGCAGCACCATCAGAATACCACG
CTCTACACCAGCTCTTCCCACTGTCCACTTTAATCGTTCATTTGCCGCTG
CGGCTCCATCCTCTGATAGCGTGCCTCCTGCCGGGAGTCCGCGCGCCTCG
GCCCGCTCTCCCTTGGACGGGGGCAATGCCTCCATGAAAAAAATGTCGGT
CCTTGACCTGTTACACAAGAAACGAAAACATCAGCCCATCTCCATGGTTA
CGGCTTACGACTACCCTTCAGCCTTGCACGTGGACCTGGCCGGGATCGAC
ATTGTCTTGTGCGGTGACTCGGTAGCGATGGTCGAGCTGGGCTACCCCAC
CACCCAACCCGTCGACATGGAACAGATGCTTCACCATTGTAAAGCCGTCG
CTCGAGGTGCAAAGCGCTCCCTTATTGTAGGTGATATGCCTTTTGGCTCT
TACGAAGTTTCCGAAGAATTAGCCATGACAAATGCCTTCCGTTTTATCAA
GGAAGGCTTCACAGACGCTGTCAAAATCGAAGGCGGACGAGACCGGGCCA
ATATCGTCCAGAAAATTGTCAAGGGAGGAATAGCAGTCATGGGACATATC
GGCCTTACCCCCCAAGCCATCTCAGTGCTGGGAGGGTTCCGCGCTCAGGG
CCGCACGGCCGTCAAGGCTCGGAGGCTGGTGGATGACGCGTTGGCCTTGC
AAGACGCAGGGGCGTTCGCGGTGGTAATTGAATGTGTCCCCGGCCCAGTC
GCGCAAGCCATCACAAATGCCCTTGAGATCCCTACCATTGGAATAGGAGC
AGGGCCGCACACGTCGGGGCAGGTGTTGGTGTACCATGATATGTTGGGCA
TGACTTCCCATCCGCACCACGAAGCGTTTGTGCCGAGATTCTGTAAGAGA
TATGCTCAGCTTGGGGATGCGATACGATCGGGTTTGGAAGCATTTAAGAA
GGACGTGGAGGAGGGTACATTCCCTAGCGAGGCGTACAGTCCGTATAAGA
TGCCCAAGGAGGAATTGGATGCCTTCCTGACGTTGATGGCGAAAGACGCG
GCGGTGAGGAAGGCCCAGGCGGAGGAGGCGGCGGAACGATTGAAGCAGAG
TGATGAGTATGAGCAAATCAAGCTGTATTAG
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Synonyms
Publications