jgi.p|Nanoce1779_2|571696, mRNA_1311 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571696
Unique Name	mRNA_1311
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1730
Alignment location	scaffold_1:250793..252522 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571782
Track	FilteredModels2
ProteinId	571696

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:250793..252522 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571696	gene_1311	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571696	mRNA_1311-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1311	CDS_1311	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:250793..252522+
coding sequence from alignment at scaffold_1:250793..252522+

mRNA sequence

>mRNA_1311 ID=mRNA_1311|Name=jgi.p|Nanoce1779_2|571696|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp
AGGCGGGAGGAAAATCACCCCGATGTTTGCCTCTCGCGTCACTGCCGCCT
CCACGGCCTCATCGTTCGCCCGCCATCTCATTGTCAGCCGCCGTCGCACC
CGCTACTTTTCCACCGGGACGACATGGGACTACGACGTCCTCATTCTCGG
CGGCGGCATCGTCGGCGCCTCCTTGGCCTGTCGATTGGCAGAAACTCTGG
CCCGTTCGCGCGGCCTCAAGATCGGTTTGCTGGAGAGTCGTCCACCACCG
CCCCTGGACAGCTGTCTAGCCCCCGACCGCCTCCCCGACCCCCGAGTTTA
TGCCTTGGCACCTTCAAGCGTGGCCTTCCTGAAATCCGTCGGCGCGTGGC
AATTTATTGGAGACAGATGGCAGGAGTACCAGTACATGCAGGTGTGGGAG
GGCGGGGCAAGTGGCTCCATCCGTTTTGATGCCTCCCAATCTACGGTCAT
GGGGGTGGGTAGCACCGGCACCAGCATCAGCCACGGGGACGAAAAGAATA
AGAAGAAGCTAGGCACTATGGCCGAGAACAGCACTGTACAAGCCGCATTA
TTTCAACGGATGGAGGCACTACAAGCTGAAGGTTTGTTGGAGCTTTATTG
CCCCGCACATGTTCAGAGTATGGCGTTCGACAACGCAGGCAGTGACCCCG
CCGGGCCTGCGCGCATCACATGGCTGAATCAAGATGGTGAAAAGAAAGAA
GTGACCACCCGCTTGCTGGTCGGTGCAGATGGAGCAGCCTCGCGGGTGAA
GAAAGTCAGGGGTTTGCCGTCATGGGGATGGGATTATGGGCAACGGGCTT
TGGTGGCCACGGTGTCGCTCGAGGACGCAAGTAGTGCAGCAGCCGCAACC
GCACCAGCTGCACTGGAAGCGAGCCCATCGTCGCCTGACGACACAAAAAC
ATTTAGGCCGCCATCAACGGCCTGGCAAATCTTCCTTCCAGAGGGCCCTC
TAGCCTTGCTCCCTCTGTGGGGTTCATATCACTCAATAGTCTGGTCCACC
ACCCCCGCAGAAGCCGACAGACTCCAAGCCCTTTCCAAAGAAGATTTCCT
CGCCGAACTTAACCTCAACCTCCAACACCCCGTCGGACTCCTTGATCCCC
CTTCGCTCCCTTCTTTCCTTCCCTCCCCCCTTTCCAGGGCAATAGGCGGA
GTACACCATCTACTCGAAAGCGTTGTAGTCAGCGCAGCACTCAACCAGGG
ATTTCACCTTCCCCCCCACGTCCACAAGCTCTGTGGCCCCCGTCTCTCCT
TCGATTTGAGAGCAGAACATGCGACGGCGTACGTAGGACCGCGGGCGGTG
TTGGTGGGGGATGCGGCTCACACCATCCACCCCATGGCGGGGCAGGGGCT
GAACCTAGGCATTGCCGATGTGGTAGCTCTTGCGGAGCTGCTAGAGAGTG
GGGTGGAGGAAGGGCAGGATCTGGGGAATGTGGGTTTTCTGAAAGGGTAT
GAGAGGGAGAGGCAGGTGGCGAATCTGGGGATGCTTGGAGGTCTGACGGC
GTTGCATCAGTTGTATGGAAGGAGGGAGGGGGGGTGGAAGTGGATGAGGA
ATGTGGGATTGGGTGCACTCAATGGTCTAGGGCCCGTGAAGGCGAAAATA
GCGGCGGTGGCGATGGGTAAGTAGTATGAGAGAGAAAATAAAGAGTAGAC
AAGGAGAGGAAGGATGCGTGTACATATATAATGGAAAGGAATTAAAGTTA
AGACGCAAATTGCAGACAAAAAAGAGGAGA

protein sequence of jgi.p|Nanoce1779_2|571696

>mRNA_1311-protein ID=mRNA_1311-protein|Name=jgi.p|Nanoce1779_2|571696|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MFASRVTAASTASSFARHLIVSRRRTRYFSTGTTWDYDVLILGGGIVGAS
LACRLAETLARSRGLKIGLLESRPPPPLDSCLAPDRLPDPRVYALAPSSV
AFLKSVGAWQFIGDRWQEYQYMQVWEGGASGSIRFDASQSTVMGVGSTGT
SISHGDEKNKKKLGTMAENSTVQAALFQRMEALQAEGLLELYCPAHVQSM
AFDNAGSDPAGPARITWLNQDGEKKEVTTRLLVGADGAASRVKKVRGLPS
WGWDYGQRALVATVSLEDASSAAAATAPAALEASPSSPDDTKTFRPPSTA
WQIFLPEGPLALLPLWGSYHSIVWSTTPAEADRLQALSKEDFLAELNLNL
QHPVGLLDPPSLPSFLPSPLSRAIGGVHHLLESVVVSAALNQGFHLPPHV
HKLCGPRLSFDLRAEHATAYVGPRAVLVGDAAHTIHPMAGQGLNLGIADV
VALAELLESGVEEGQDLGNVGFLKGYERERQVANLGMLGGLTALHQLYGR
REGGWKWMRNVGLGALNGLGPVKAKIAAVAMGK*

mRNA from alignment at scaffold_1:250793..252522+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1311 ID=mRNA_1311|Name=jgi.p|Nanoce1779_2|571696|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp|location=Sequence derived from alignment at scaffold_1:250793..252522+ (Nannochloropsis oceanica)
AGGCGGGAGGAAAATCACCCCGATGTTTGCCTCTCGCGTCACTGCCGCCT
CCACGGCCTCATCGTTCGCCCGCCATCTCATTGTCAGCCGCCGTCGCACC
CGCTACTTTTCCACCGGGACGACATGGGACTACGACGTCCTCATTCTCGG
CGGCGGCATCGTCGGCGCCTCCTTGGCCTGTCGATTGGCAGAAACTCTGG
CCCGTTCGCGCGGCCTCAAGATCGGTTTGCTGGAGAGTCGTCCACCACCG
CCCCTGGACAGCTGTCTAGCCCCCGACCGCCTCCCCGACCCCCGAGTTTA
TGCCTTGGCACCTTCAAGCGTGGCCTTCCTGAAATCCGTCGGCGCGTGGC
AATTTATTGGAGACAGATGGCAGGAGTACCAGTACATGCAGGTGTGGGAG
GGCGGGGCAAGTGGCTCCATCCGTTTTGATGCCTCCCAATCTACGGTCAT
GGGGGTGGGTAGCACCGGCACCAGCATCAGCCACGGGGACGAAAAGAATA
AGAAGAAGCTAGGCACTATGGCCGAGAACAGCACTGTACAAGCCGCATTA
TTTCAACGGATGGAGGCACTACAAGCTGAAGGTTTGTTGGAGCTTTATTG
CCCCGCACATGTTCAGAGTATGGCGTTCGACAACGCAGGCAGTGACCCCG
CCGGGCCTGCGCGCATCACATGGCTGAATCAAGATGGTGAAAAGAAAGAA
GTGACCACCCGCTTGCTGGTCGGTGCAGATGGAGCAGCCTCGCGGGTGAA
GAAAGTCAGGGGTTTGCCGTCATGGGGATGGGATTATGGGCAACGGGCTT
TGGTGGCCACGGTGTCGCTCGAGGACGCAAGTAGTGCAGCAGCCGCAACC
GCACCAGCTGCACTGGAAGCGAGCCCATCGTCGCCTGACGACACAAAAAC
ATTTAGGCCGCCATCAACGGCCTGGCAAATCTTCCTTCCAGAGGGCCCTC
TAGCCTTGCTCCCTCTGTGGGGTTCATATCACTCAATAGTCTGGTCCACC
ACCCCCGCAGAAGCCGACAGACTCCAAGCCCTTTCCAAAGAAGATTTCCT
CGCCGAACTTAACCTCAACCTCCAACACCCCGTCGGACTCCTTGATCCCC
CTTCGCTCCCTTCTTTCCTTCCCTCCCCCCTTTCCAGGGCAATAGGCGGA
GTACACCATCTACTCGAAAGCGTTGTAGTCAGCGCAGCACTCAACCAGGG
ATTTCACCTTCCCCCCCACGTCCACAAGCTCTGTGGCCCCCGTCTCTCCT
TCGATTTGAGAGCAGAACATGCGACGGCGTACGTAGGACCGCGGGCGGTG
TTGGTGGGGGATGCGGCTCACACCATCCACCCCATGGCGGGGCAGGGGCT
GAACCTAGGCATTGCCGATGTGGTAGCTCTTGCGGAGCTGCTAGAGAGTG
GGGTGGAGGAAGGGCAGGATCTGGGGAATGTGGGTTTTCTGAAAGGGTAT
GAGAGGGAGAGGCAGGTGGCGAATCTGGGGATGCTTGGAGGTCTGACGGC
GTTGCATCAGTTGTATGGAAGGAGGGAGGGGGGGTGGAAGTGGATGAGGA
ATGTGGGATTGGGTGCACTCAATGGTCTAGGGCCCGTGAAGGCGAAAATA
GCGGCGGTGGCGATGGGTAAGTAGTATGAGAGAGAAAATAAAGAGTAGAC
AAGGAGAGGAAGGATGCGTGTACATATATAATGGAAAGGAATTAAAGTTA
AGACGCAAATTGCAGACAAAAAAGAGGAGA

Coding sequence (CDS) from alignment at scaffold_1:250793..252522+

>mRNA_1311 ID=mRNA_1311|Name=jgi.p|Nanoce1779_2|571696|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_1:250793..252522+ (Nannochloropsis oceanica)
ATGTTTGCCTCTCGCGTCACTGCCGCCTCCACGGCCTCATCGTTCGCCCG
CCATCTCATTGTCAGCCGCCGTCGCACCCGCTACTTTTCCACCGGGACGA
CATGGGACTACGACGTCCTCATTCTCGGCGGCGGCATCGTCGGCGCCTCC
TTGGCCTGTCGATTGGCAGAAACTCTGGCCCGTTCGCGCGGCCTCAAGAT
CGGTTTGCTGGAGAGTCGTCCACCACCGCCCCTGGACAGCTGTCTAGCCC
CCGACCGCCTCCCCGACCCCCGAGTTTATGCCTTGGCACCTTCAAGCGTG
GCCTTCCTGAAATCCGTCGGCGCGTGGCAATTTATTGGAGACAGATGGCA
GGAGTACCAGTACATGCAGGTGTGGGAGGGCGGGGCAAGTGGCTCCATCC
GTTTTGATGCCTCCCAATCTACGGTCATGGGGGTGGGTAGCACCGGCACC
AGCATCAGCCACGGGGACGAAAAGAATAAGAAGAAGCTAGGCACTATGGC
CGAGAACAGCACTGTACAAGCCGCATTATTTCAACGGATGGAGGCACTAC
AAGCTGAAGGTTTGTTGGAGCTTTATTGCCCCGCACATGTTCAGAGTATG
GCGTTCGACAACGCAGGCAGTGACCCCGCCGGGCCTGCGCGCATCACATG
GCTGAATCAAGATGGTGAAAAGAAAGAAGTGACCACCCGCTTGCTGGTCG
GTGCAGATGGAGCAGCCTCGCGGGTGAAGAAAGTCAGGGGTTTGCCGTCA
TGGGGATGGGATTATGGGCAACGGGCTTTGGTGGCCACGGTGTCGCTCGA
GGACGCAAGTAGTGCAGCAGCCGCAACCGCACCAGCTGCACTGGAAGCGA
GCCCATCGTCGCCTGACGACACAAAAACATTTAGGCCGCCATCAACGGCC
TGGCAAATCTTCCTTCCAGAGGGCCCTCTAGCCTTGCTCCCTCTGTGGGG
TTCATATCACTCAATAGTCTGGTCCACCACCCCCGCAGAAGCCGACAGAC
TCCAAGCCCTTTCCAAAGAAGATTTCCTCGCCGAACTTAACCTCAACCTC
CAACACCCCGTCGGACTCCTTGATCCCCCTTCGCTCCCTTCTTTCCTTCC
CTCCCCCCTTTCCAGGGCAATAGGCGGAGTACACCATCTACTCGAAAGCG
TTGTAGTCAGCGCAGCACTCAACCAGGGATTTCACCTTCCCCCCCACGTC
CACAAGCTCTGTGGCCCCCGTCTCTCCTTCGATTTGAGAGCAGAACATGC
GACGGCGTACGTAGGACCGCGGGCGGTGTTGGTGGGGGATGCGGCTCACA
CCATCCACCCCATGGCGGGGCAGGGGCTGAACCTAGGCATTGCCGATGTG
GTAGCTCTTGCGGAGCTGCTAGAGAGTGGGGTGGAGGAAGGGCAGGATCT
GGGGAATGTGGGTTTTCTGAAAGGGTATGAGAGGGAGAGGCAGGTGGCGA
ATCTGGGGATGCTTGGAGGTCTGACGGCGTTGCATCAGTTGTATGGAAGG
AGGGAGGGGGGGTGGAAGTGGATGAGGAATGTGGGATTGGGTGCACTCAA
TGGTCTAGGGCCCGTGAAGGCGAAAATAGCGGCGGTGGCGATGGGTAAGT
AG

Synonyms

Publications