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Properties
| Property Name | Value |
|---|
| TranscriptId | 522080 |
| Track | FilteredModels2 |
| ProteinId | 521994 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:247222..249036 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1310 ID=mRNA_1310|Name=jgi.p|Nanoce1779_2|521994|organism=Nannochloropsis oceanica|type=mRNA|length=1578bp
ATGATCACTCCACCCACCGTAACCGTCGTCCCACCCACCATCCCCCTCAC
GGCTGTCGAGGCCCACCTGTTCGATCTCTTAAAACTGGCGGTGGCGAAAG
AAGCTAAAGGCACCGTGCTGCGCGTGGCAGGTGGGTGGGTCCGGGACAAG
CTGCTGGGCAAGGAAAGCGATGATGTGGACGTGGCCCTCGACAACATGTC
GGGCGCATCCTTTGCCAAAAGCCTCAACACATTTCTCCAGCAGCAAGGAT
TTGAGACGCGGTCTATCGGTGTGATTCTAGCCAACCCCGACCAGTCCAAG
CACTTGGAGACCGCCCGCGTCCTCGTCCTAGGGCATTGGATCGATTTCAC
CAACCTCCGCACCGAGACTTATCGTGCCGATAGCCGCATCCCCGACATGG
CTTTTGGGTCTGCGCACGACGATGCACACCGAAGGGATTTCACGATTAAT
GCTTTGTTTTACAATCTGCAGACTGGCCAGGTAGAGGACTTAACGGGGAA
GGGCTTGAGTGATTTGCTGAGCCCCGAAGGTGTGATTCGCACGCCCTTGC
CAGCATTGACCACGTTCTTAGACGACCCTTTGCGATTGTTACGGGCCGTT
AGATTCGCGGCTCGATTTGCCTTGCCGTTGGATGACGATATAGTAAAAGC
GGCGAAGGACGGGGATTTACAGAAGGCACTATACGAAAAAGTGAGTCGAG
AACGAGTCGGGATTGAAGTGGAAGGGATGTTGTCGGGGAAAGACGCCAGA
CCGGCATTGGCTTTTGAAATGCTTGTTTCTTTGGGGTTGACGGACGTGAT
GTTTCGGTTGCCTGAGGAGATGAAGAAAGAGGACGAATTTGCAACGACGA
TGACAAAGGTATTGCAGGGATTAAGAGAGTCAGAGGCCTACAAACGACCT
CGGCGGGAGCATCGATTGCTTTTTTTAAGTGCCATGCTGAGAGCGTGGGC
TGGCCACTACACCGTGGAAGAGAAGAAGATTGTGAAGAAGGGCAGAGAAA
GCGAAAGAGAAAAGAGAGTGCCGATCGTTCAGTGGTTCATTCGGGAGGCA
TTGAAACTCCGGGCGAAGGATGCTGAGGACATGACCCTGCTTTTGGGGAC
GCTTGATAGGTTGCAGGCCTTGAGCGGCGAAAACAGTAATGAGCAGCGGG
TGCGGCTGGAGGCGGGTATGGTACTGCGAGAGCTGAAGGAGTTGTGGCGG
ACGGGGCTGGACTTGGCATGTGCGCGGGAACTCGCAATTACGTTTGAAGA
GAAATTAGAAATATCAGCAGCAGTTACAACACTCAAGGCAGTAACGACGA
GCTTCTTGGAGGTTTTGACTCGGTATCGACGTACGCGCGAAGCCTTGGAG
ATCATGGGCTTGGACCAGATCTGGAAACTCCGGCCGTTGCTGGACGGGAA
GGCCGTCATCACCCTTCTTCGCTTACAAAAAGGACCAATGGTCGGGCAAG
TCATGGAAGCGCAGATTGAGTGGCAGCTTCAGCATCCAAAAGAAGGCGTG
GAGGCGTTGACGGAGCACTTGAAAGGACTCATGGCAGCGGGCACATTTAG
CGCGGCTGAGGGAGAGCGGGAAGGGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|521994 >mRNA_1310-protein ID=mRNA_1310-protein|Name=jgi.p|Nanoce1779_2|521994|organism=Nannochloropsis oceanica|type=polypeptide|length=526bp
MITPPTVTVVPPTIPLTAVEAHLFDLLKLAVAKEAKGTVLRVAGGWVRDK
LLGKESDDVDVALDNMSGASFAKSLNTFLQQQGFETRSIGVILANPDQSK
HLETARVLVLGHWIDFTNLRTETYRADSRIPDMAFGSAHDDAHRRDFTIN
ALFYNLQTGQVEDLTGKGLSDLLSPEGVIRTPLPALTTFLDDPLRLLRAV
RFAARFALPLDDDIVKAAKDGDLQKALYEKVSRERVGIEVEGMLSGKDAR
PALAFEMLVSLGLTDVMFRLPEEMKKEDEFATTMTKVLQGLRESEAYKRP
RREHRLLFLSAMLRAWAGHYTVEEKKIVKKGRESEREKRVPIVQWFIREA
LKLRAKDAEDMTLLLGTLDRLQALSGENSNEQRVRLEAGMVLRELKELWR
TGLDLACARELAITFEEKLEISAAVTTLKAVTTSFLEVLTRYRRTREALE
IMGLDQIWKLRPLLDGKAVITLLRLQKGPMVGQVMEAQIEWQLQHPKEGV
EALTEHLKGLMAAGTFSAAEGEREG* back to topmRNA from alignment at scaffold_1:247222..249036- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1310 ID=mRNA_1310|Name=jgi.p|Nanoce1779_2|521994|organism=Nannochloropsis oceanica|type=mRNA|length=1815bp|location=Sequence derived from alignment at scaffold_1:247222..249036- (Nannochloropsis oceanica)
ATGATCACTCCACCCACCGTAACCGTCGTCCCACCCACCATCCCCCTCAC
GGCTGTCGAGGCCCACCTGTTCGATCTCTTAAAACTGGCGGTGGCGAAAG
AAGCTAAAGGCACCGTGCTGCGCGTGGCAGGTGGGTGGGTCCGGGACAAG
CTGCTGGGCAAGGAAAGCGATGATGTGGACGTGGCCCTCGACAACATGTC
GGGCGCATCCTTTGCCAAAAGCCTCAACACATTTCTCCAGCAGCAAGGAT
TTGAGACGCGGTCTATCGGTGTGATTCTAGCCAACCCCGACCAGTCCAAG
CACTTGGAGACCGCCCGCGTCCTCGTCCTAGGGCATTGGATCGATTTCAC
CAACCTCCGCACCGAGACTTATCGTGCCGATAGCCGCATCCCCGACATGG
CTTTTGGGTCTGCGCACGACGATGCACACCGAAGGGATTTCACGATTAAT
GCTTTGTTTTACAATCTGCAGACTGGCCAGGTAGAGGACTTAACGGGGAA
GGGCTTGAGTGATTTGCTGAGCCCCGAAGGTGTGATTCGCACGCCCTTGC
CAGCATTGACCACGTTCTTAGACGACCCTTTGCGATTGTTACGGGCCGTT
AGATTCGCGGCTCGATTTGCCTTGCCGTTGGATGACGATATAGTAAAAGC
GGCGAAGGACGGGGATTTACAGAAGGCACTATACGAAAAAGTGAGTCGAG
AACGAGTCGGGATTGAAGTGGAAGGGATGTTGTCGGGGAAAGACGCCAGA
CCGGCATTGGCTTTTGAAATGCTTGTTTCTTTGGGGTTGACGGACGTGAT
GTTTCGGTTGCCTGAGGAGATGAAGGTGCAGCTGAGACCGGAGAGAGGGA
GGGATGGATGGGCGGAGGAAGGGTTGGGAACAGTGAGGATGGTGAATTTG
TTGTTGATGTATCGGGAGGATGATGGACTTTTGAAAGGAGATGATAAGAA
AGAGGACGAATTTGCAACGACGATGACAAAGGTATTGCAGGGATTAAGAG
AGTCAGAGGCCTACAAACGACCTCGGCGGGAGCATCGATTGCTTTTTTTA
AGTGCCATGCTGAGAGCGTGGGCTGGCCACTACACCGTGGAAGAGAAGAA
GATTGTGAAGAAGGGCAGAGAAAGCGAAAGAGAAAAGAGAGTGCCGATCG
TTCAGTGGTTCATTCGGGAGGCATTGAAACTCCGGGCGAAGGATGCTGAG
GACATGACCCTGCTTTTGGGGACGCTTGATAGGTTGCAGGCCTTGAGTCG
CAGCATGGCAACAACGACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCGACGATGGCGGTTCAGGAGGCAGATAATCCAGGAATAGGAGGAGGA
GGAGTAAAAGGCGGCGAAAACAGTAATGAGCAGCGGGTGCGGCTGGAGGC
GGGTATGGTACTGCGAGAGCTGAAGGAGTTGTGGCGGACGGGGCTGGACT
TGGCATGTGCGCGGGAACTCGCAATTACGTTTGAAGAGAAATTAGAAATA
TCAGCAGCAGTTACAACACTCAAGGCAGTAACGACGAGCTTCTTGGAGGT
TTTGACTCGGTATCGACGTACGCGCGAAGCCTTGGAGATCATGGGCTTGG
ACCAGATCTGGAAACTCCGGCCGTTGCTGGACGGGAAGGCCGTCATCACC
CTTCTTCGCTTACAAAAAGGACCAATGGTCGGGCAAGTCATGGAAGCGCA
GATTGAGTGGCAGCTTCAGCATCCAAAAGAAGGCGTGGAGGCGTTGACGG
AGCACTTGAAAGGACTCATGGCAGCGGGCACATTTAGCGCGGCTGAGGGA
GAGCGGGAAGGGTAA back to topCoding sequence (CDS) from alignment at scaffold_1:247222..249036- >mRNA_1310 ID=mRNA_1310|Name=jgi.p|Nanoce1779_2|521994|organism=Nannochloropsis oceanica|type=CDS|length=4734bp|location=Sequence derived from alignment at scaffold_1:247222..249036- (Nannochloropsis oceanica)
GCGGCGAAAACAGTAATGAGCAGCGGGTGCGGCTGGAGGCGGGTATGGTA
CTGCGAGAGCTGAAGGAGTTGTGGCGGACGGGGCTGGACTTGGCATGTGC
GCGGGAACTCGCAATTACGTTTGAAGAGAAATTAGAAATATCAGCAGCAG
TTACAACACTCAAGGCAGTAACGACGAGCTTCTTGGAGGTTTTGACTCGG
TATCGACGTACGCGCGAAGCCTTGGAGATCATGGGCTTGGACCAGATCTG
GAAACTCCGGCCGTTGCTGGACGGGAAGGCCGTCATCACCCTTCTTCGCT
TACAAAAAGGACCAATGGTCGGGCAAGTCATGGAAGCGCAGATTGAGTGG
CAGCTTCAGCATCCAAAAGAAGGCGTGGAGGCGTTGACGGAGCACTTGAA
AGGACTCATGGCAGCGGGCACATTTAGCGCGGCTGAGGGAGAGCGGGAAG
GGTAAAAAGAGGACGAATTTGCAACGACGATGACAAAGGTATTGCAGGGA
TTAAGAGAGTCAGAGGCCTACAAACGACCTCGGCGGGAGCATCGATTGCT
TTTTTTAAGTGCCATGCTGAGAGCGTGGGCTGGCCACTACACCGTGGAAG
AGAAGAAGATTGTGAAGAAGGGCAGAGAAAGCGAAAGAGAAAAGAGAGTG
CCGATCGTTCAGTGGTTCATTCGGGAGGCATTGAAACTCCGGGCGAAGGA
TGCTGAGGACATGACCCTGCTTTTGGGGACGCTTGATAGGTTGCAGGCCT
TGAATGATCACTCCACCCACCGTAACCGTCGTCCCACCCACCATCCCCCT
CACGGCTGTCGAGGCCCACCTGTTCGATCTCTTAAAACTGGCGGTGGCGA
AAGAAGCTAAAGGCACCGTGCTGCGCGTGGCAGGTGGGTGGGTCCGGGAC
AAGCTGCTGGGCAAGGAAAGCGATGATGTGGACGTGGCCCTCGACAACAT
GTCGGGCGCATCCTTTGCCAAAAGCCTCAACACATTTCTCCAGCAGCAAG
GATTTGAGACGCGGTCTATCGGTGTGATTCTAGCCAACCCCGACCAGTCC
AAGCACTTGGAGACCGCCCGCGTCCTCGTCCTAGGGCATTGGATCGATTT
CACCAACCTCCGCACCGAGACTTATCGTGCCGATAGCCGCATCCCCGACA
TGGCTTTTGGGTCTGCGCACGACGATGCACACCGAAGGGATTTCACGATT
AATGCTTTGTTTTACAATCTGCAGACTGGCCAGGTAGAGGACTTAACGGG
GAAGGGCTTGAGTGATTTGCTGAGCCCCGAAGGTGTGATTCGCACGCCCT
TGCCAGCATTGACCACGTTCTTAGACGACCCTTTGCGATTGTTACGGGCC
GTTAGATTCGCGGCTCGATTTGCCTTGCCGTTGGATGACGATATAGTAAA
AGCGGCGAAGGACGGGGATTTACAGAAGGCACTATACGAAAAAGTGAGTC
GAGAACGAGTCGGGATTGAAGTGGAAGGGATGTTGTCGGGGAAAGACGCC
AGACCGGCATTGGCTTTTGAAATGCTTGTTTCTTTGGGGTTGACGGACGT
GATGTTTCGGTTGCCTGAGGAGATGAAGGCGGCGAAAACAGTAATGAGCA
GCGGGTGCGGCTGGAGGCGGGTATGGTACTGCGAGAGCTGAAGGAGTTGT
GGCGGACGGGGCTGGACTTGGCATGTGCGCGGGAACTCGCAATTACGTTT
GAAGAGAAATTAGAAATATCAGCAGCAGTTACAACACTCAAGGCAGTAAC
GACGAGCTTCTTGGAGGTTTTGACTCGGTATCGACGTACGCGCGAAGCCT
TGGAGATCATGGGCTTGGACCAGATCTGGAAACTCCGGCCGTTGCTGGAC
GGGAAGGCCGTCATCACCCTTCTTCGCTTACAAAAAGGACCAATGGTCGG
GCAAGTCATGGAAGCGCAGATTGAGTGGCAGCTTCAGCATCCAAAAGAAG
GCGTGGAGGCGTTGACGGAGCACTTGAAAGGACTCATGGCAGCGGGCACA
TTTAGCGCGGCTGAGGGAGAGCGGGAAGGGTAAAAAGAGGACGAATTTGC
AACGACGATGACAAAGGTATTGCAGGGATTAAGAGAGTCAGAGGCCTACA
AACGACCTCGGCGGGAGCATCGATTGCTTTTTTTAAGTGCCATGCTGAGA
GCGTGGGCTGGCCACTACACCGTGGAAGAGAAGAAGATTGTGAAGAAGGG
CAGAGAAAGCGAAAGAGAAAAGAGAGTGCCGATCGTTCAGTGGTTCATTC
GGGAGGCATTGAAACTCCGGGCGAAGGATGCTGAGGACATGACCCTGCTT
TTGGGGACGCTTGATAGGTTGCAGGCCTTGAATGATCACTCCACCCACCG
TAACCGTCGTCCCACCCACCATCCCCCTCACGGCTGTCGAGGCCCACCTG
TTCGATCTCTTAAAACTGGCGGTGGCGAAAGAAGCTAAAGGCACCGTGCT
GCGCGTGGCAGGTGGGTGGGTCCGGGACAAGCTGCTGGGCAAGGAAAGCG
ATGATGTGGACGTGGCCCTCGACAACATGTCGGGCGCATCCTTTGCCAAA
AGCCTCAACACATTTCTCCAGCAGCAAGGATTTGAGACGCGGTCTATCGG
TGTGATTCTAGCCAACCCCGACCAGTCCAAGCACTTGGAGACCGCCCGCG
TCCTCGTCCTAGGGCATTGGATCGATTTCACCAACCTCCGCACCGAGACT
TATCGTGCCGATAGCCGCATCCCCGACATGGCTTTTGGGTCTGCGCACGA
CGATGCACACCGAAGGGATTTCACGATTAATGCTTTGTTTTACAATCTGC
AGACTGGCCAGGTAGAGGACTTAACGGGGAAGGGCTTGAGTGATTTGCTG
AGCCCCGAAGGTGTGATTCGCACGCCCTTGCCAGCATTGACCACGTTCTT
AGACGACCCTTTGCGATTGTTACGGGCCGTTAGATTCGCGGCTCGATTTG
CCTTGCCGTTGGATGACGATATAGTAAAAGCGGCGAAGGACGGGGATTTA
CAGAAGGCACTATACGAAAAAGTGAGTCGAGAACGAGTCGGGATTGAAGT
GGAAGGGATGTTGTCGGGGAAAGACGCCAGACCGGCATTGGCTTTTGAAA
TGCTTGTTTCTTTGGGGTTGACGGACGTGATGTTTCGGTTGCCTGAGGAG
ATGAAGGCGGCGAAAACAGTAATGAGCAGCGGGTGCGGCTGGAGGCGGGT
ATGGTACTGCGAGAGCTGAAGGAGTTGTGGCGGACGGGGCTGGACTTGGC
ATGTGCGCGGGAACTCGCAATTACGTTTGAAGAGAAATTAGAAATATCAG
CAGCAGTTACAACACTCAAGGCAGTAACGACGAGCTTCTTGGAGGTTTTG
ACTCGGTATCGACGTACGCGCGAAGCCTTGGAGATCATGGGCTTGGACCA
GATCTGGAAACTCCGGCCGTTGCTGGACGGGAAGGCCGTCATCACCCTTC
TTCGCTTACAAAAAGGACCAATGGTCGGGCAAGTCATGGAAGCGCAGATT
GAGTGGCAGCTTCAGCATCCAAAAGAAGGCGTGGAGGCGTTGACGGAGCA
CTTGAAAGGACTCATGGCAGCGGGCACATTTAGCGCGGCTGAGGGAGAGC
GGGAAGGGTAAAAAGAGGACGAATTTGCAACGACGATGACAAAGGTATTG
CAGGGATTAAGAGAGTCAGAGGCCTACAAACGACCTCGGCGGGAGCATCG
ATTGCTTTTTTTAAGTGCCATGCTGAGAGCGTGGGCTGGCCACTACACCG
TGGAAGAGAAGAAGATTGTGAAGAAGGGCAGAGAAAGCGAAAGAGAAAAG
AGAGTGCCGATCGTTCAGTGGTTCATTCGGGAGGCATTGAAACTCCGGGC
GAAGGATGCTGAGGACATGACCCTGCTTTTGGGGACGCTTGATAGGTTGC
AGGCCTTGAATGATCACTCCACCCACCGTAACCGTCGTCCCACCCACCAT
CCCCCTCACGGCTGTCGAGGCCCACCTGTTCGATCTCTTAAAACTGGCGG
TGGCGAAAGAAGCTAAAGGCACCGTGCTGCGCGTGGCAGGTGGGTGGGTC
CGGGACAAGCTGCTGGGCAAGGAAAGCGATGATGTGGACGTGGCCCTCGA
CAACATGTCGGGCGCATCCTTTGCCAAAAGCCTCAACACATTTCTCCAGC
AGCAAGGATTTGAGACGCGGTCTATCGGTGTGATTCTAGCCAACCCCGAC
CAGTCCAAGCACTTGGAGACCGCCCGCGTCCTCGTCCTAGGGCATTGGAT
CGATTTCACCAACCTCCGCACCGAGACTTATCGTGCCGATAGCCGCATCC
CCGACATGGCTTTTGGGTCTGCGCACGACGATGCACACCGAAGGGATTTC
ACGATTAATGCTTTGTTTTACAATCTGCAGACTGGCCAGGTAGAGGACTT
AACGGGGAAGGGCTTGAGTGATTTGCTGAGCCCCGAAGGTGTGATTCGCA
CGCCCTTGCCAGCATTGACCACGTTCTTAGACGACCCTTTGCGATTGTTA
CGGGCCGTTAGATTCGCGGCTCGATTTGCCTTGCCGTTGGATGACGATAT
AGTAAAAGCGGCGAAGGACGGGGATTTACAGAAGGCACTATACGAAAAAG
TGAGTCGAGAACGAGTCGGGATTGAAGTGGAAGGGATGTTGTCGGGGAAA
GACGCCAGACCGGCATTGGCTTTTGAAATGCTTGTTTCTTTGGGGTTGAC
GGACGTGATGTTTCGGTTGCCTGAGGAGATGAAG back to top
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