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Properties
| Property Name | Value |
|---|
| TranscriptId | 571777 |
| Track | FilteredModels2 |
| ProteinId | 571691 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:245659..246997 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1309 ID=mRNA_1309|Name=jgi.p|Nanoce1779_2|571691|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp
ACAGGCTTTTCCAGAAATACAGCATGAGGACCTTGAGGTTCCAAGCCCGC
AGCAATGCCATGACCTTATTGCTAGTCGTCCTTGTTGCCGCTGCCACAAC
CTCCTCTACTCATCCCCCATGCTTTCATGTCTCCAGAACCGATGCCTTCC
ACAAGAGCGCCGTGCACCAACCGATCCGCGCCCAGCAAGGCAGCCGAAAA
CTTGCCTTGGCCTTGTTCAGCAGCAACAACGACAACAACCGCTCCTCCGG
CAGGCTCCAAATGAAAGATGTATTGCGTCCTAGTGCTCCTCCCTCTTCCC
CTCCCCCCTCCGCCCTCACCGAGTGGGCCGCCGAAGTCAGCCTGGCCAGC
CTCAAGGAAAAAATCATTCAACAGCCTATCCAGCGCATAATACCTCTCAT
CACACTCATTTCATTTGTAGGGTACGTCTTCATTTCGCCATTCGCCCCGG
GGCCCGTACCCAACATGCTCGACCCAGCGGTCCTCAAGCAAGTGGGGGGG
TTGACTCTCAACTACTTCTGCATCCTCCCTACTCTCCTCCCCAGCATTGC
CCCGAAATTTTCTCCTGTAATGGAAGGGGTATTTAATCTGCTGCTGGCAT
ACGCGGCTTTATTAAGCGGCTTTCTGGTGGATGGACGGAAGGCAGGCAGC
AGGAGCAGCAACGTCAACTTCTTCTTGCCTTTCGCGGCAGCTGGCTTGGC
ACTGACCAACACTGCGTTCCTTCCTTATCTTGTCCTTCGTCCATTGCACA
AGAAAGACGAAACGTGCGTTAGGAAGGAGGACGTGCCCCAAGTTGAGTTA
CAGCTGGGAGAAGCGAAGAAGCTATTAGCGGTTTATGGGCTCGCGGGCTT
GTATAGTGTGTGGTGGGGGTTCTTCGCGCGCCCGGAGTTTGGAGGATTGA
GTGCGAGATGGGCGAGTCTAATAGAGATGGCATCGACGGATAGACTGATG
TTTGCTTTTTGTGTGGAGGCGGTCTTATTTTGGGTGTTTCAGGGTTGGTT
AGTGGATGATGATATGATGAGGAGGACGGGAGCAAAAGAAAGCGGGTCAT
TGGGGGAGATTCTTGTACCGTCGGTGGCCAAGGTGGTGCCGTTTGTAGGT
TTGTTCATGTATATGATGTGGAGGCCGCCATTGATGGACAGAGGGGAGGG
AAAGATAGAGGAGGAGGGAGGAAGGATTTGAAAAAAGACGAGAAAGCTGC
GGTGTTTTTGAGCACTGAGGACACGAATATGTCACCGATACAATTCACTT
ACTGGCTCCGATCTTCGACTTTGCGTCTGCTATATTGCAACATATTTGTT
CCTTCCTCTCCTGCGATTGTTTGTTTTCATTCTTTGCTG back to topprotein sequence of jgi.p|Nanoce1779_2|571691 >mRNA_1309-protein ID=mRNA_1309-protein|Name=jgi.p|Nanoce1779_2|571691|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MRTLRFQARSNAMTLLLVVLVAAATTSSTHPPCFHVSRTDAFHKSAVHQP
IRAQQGSRKLALALFSSNNDNNRSSGRLQMKDVLRPSAPPSSPPPSALTE
WAAEVSLASLKEKIIQQPIQRIIPLITLISFVGYVFISPFAPGPVPNMLD
PAVLKQVGGLTLNYFCILPTLLPSIAPKFSPVMEGVFNLLLAYAALLSGF
LVDGRKAGSRSSNVNFFLPFAAAGLALTNTAFLPYLVLRPLHKKDETCVR
KEDVPQVELQLGEAKKLLAVYGLAGLYSVWWGFFARPEFGGLSARWASLI
EMASTDRLMFAFCVEAVLFWVFQGWLVDDDMMRRTGAKESGSLGEILVPS
VAKVVPFVGLFMYMMWRPPLMDRGEGKIEEEGGRI* back to topmRNA from alignment at scaffold_1:245659..246997- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1309 ID=mRNA_1309|Name=jgi.p|Nanoce1779_2|571691|organism=Nannochloropsis oceanica|type=mRNA|length=1339bp|location=Sequence derived from alignment at scaffold_1:245659..246997- (Nannochloropsis oceanica)
ACAGGCTTTTCCAGAAATACAGCATGAGGACCTTGAGGTTCCAAGCCCGC
AGCAATGCCATGACCTTATTGCTAGTCGTCCTTGTTGCCGCTGCCACAAC
CTCCTCTACTCATCCCCCATGCTTTCATGTCTCCAGAACCGATGCCTTCC
ACAAGAGCGCCGTGCACCAACCGATCCGCGCCCAGCAAGGCAGCCGAAAA
CTTGCCTTGGCCTTGTTCAGCAGCAACAACGACAACAACCGCTCCTCCGG
CAGGCTCCAAATGAAAGATGTATTGCGTCCTAGTGCTCCTCCCTCTTCCC
CTCCCCCCTCCGCCCTCACCGAGTGGGCCGCCGAAGTCAGCCTGGCCAGC
CTCAAGGAAAAAATCATTCAACAGCCTATCCAGCGCATAATACCTCTCAT
CACACTCATTTCATTTGTAGGGTACGTCTTCATTTCGCCATTCGCCCCGG
GGCCCGTACCCAACATGCTCGACCCAGCGGTCCTCAAGCAAGTGGGGGGG
TTGACTCTCAACTACTTCTGCATCCTCCCTACTCTCCTCCCCAGCATTGC
CCCGAAATTTTCTCCTGTAATGGAAGGGGTATTTAATCTGCTGCTGGCAT
ACGCGGCTTTATTAAGCGGCTTTCTGGTGGATGGACGGAAGGCAGGCAGC
AGGAGCAGCAACGTCAACTTCTTCTTGCCTTTCGCGGCAGCTGGCTTGGC
ACTGACCAACACTGCGTTCCTTCCTTATCTTGTCCTTCGTCCATTGCACA
AGAAAGACGAAACGTGCGTTAGGAAGGAGGACGTGCCCCAAGTTGAGTTA
CAGCTGGGAGAAGCGAAGAAGCTATTAGCGGTTTATGGGCTCGCGGGCTT
GTATAGTGTGTGGTGGGGGTTCTTCGCGCGCCCGGAGTTTGGAGGATTGA
GTGCGAGATGGGCGAGTCTAATAGAGATGGCATCGACGGATAGACTGATG
TTTGCTTTTTGTGTGGAGGCGGTCTTATTTTGGGTGTTTCAGGGTTGGTT
AGTGGATGATGATATGATGAGGAGGACGGGAGCAAAAGAAAGCGGGTCAT
TGGGGGAGATTCTTGTACCGTCGGTGGCCAAGGTGGTGCCGTTTGTAGGT
TTGTTCATGTATATGATGTGGAGGCCGCCATTGATGGACAGAGGGGAGGG
AAAGATAGAGGAGGAGGGAGGAAGGATTTGAAAAAAGACGAGAAAGCTGC
GGTGTTTTTGAGCACTGAGGACACGAATATGTCACCGATACAATTCACTT
ACTGGCTCCGATCTTCGACTTTGCGTCTGCTATATTGCAACATATTTGTT
CCTTCCTCTCCTGCGATTGTTTGTTTTCATTCTTTGCTG back to topCoding sequence (CDS) from alignment at scaffold_1:245659..246997- >mRNA_1309 ID=mRNA_1309|Name=jgi.p|Nanoce1779_2|571691|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_1:245659..246997- (Nannochloropsis oceanica)
ATGAGGACCTTGAGGTTCCAAGCCCGCAGCAATGCCATGACCTTATTGCT
AGTCGTCCTTGTTGCCGCTGCCACAACCTCCTCTACTCATCCCCCATGCT
TTCATGTCTCCAGAACCGATGCCTTCCACAAGAGCGCCGTGCACCAACCG
ATCCGCGCCCAGCAAGGCAGCCGAAAACTTGCCTTGGCCTTGTTCAGCAG
CAACAACGACAACAACCGCTCCTCCGGCAGGCTCCAAATGAAAGATGTAT
TGCGTCCTAGTGCTCCTCCCTCTTCCCCTCCCCCCTCCGCCCTCACCGAG
TGGGCCGCCGAAGTCAGCCTGGCCAGCCTCAAGGAAAAAATCATTCAACA
GCCTATCCAGCGCATAATACCTCTCATCACACTCATTTCATTTGTAGGGT
ACGTCTTCATTTCGCCATTCGCCCCGGGGCCCGTACCCAACATGCTCGAC
CCAGCGGTCCTCAAGCAAGTGGGGGGGTTGACTCTCAACTACTTCTGCAT
CCTCCCTACTCTCCTCCCCAGCATTGCCCCGAAATTTTCTCCTGTAATGG
AAGGGGTATTTAATCTGCTGCTGGCATACGCGGCTTTATTAAGCGGCTTT
CTGGTGGATGGACGGAAGGCAGGCAGCAGGAGCAGCAACGTCAACTTCTT
CTTGCCTTTCGCGGCAGCTGGCTTGGCACTGACCAACACTGCGTTCCTTC
CTTATCTTGTCCTTCGTCCATTGCACAAGAAAGACGAAACGTGCGTTAGG
AAGGAGGACGTGCCCCAAGTTGAGTTACAGCTGGGAGAAGCGAAGAAGCT
ATTAGCGGTTTATGGGCTCGCGGGCTTGTATAGTGTGTGGTGGGGGTTCT
TCGCGCGCCCGGAGTTTGGAGGATTGAGTGCGAGATGGGCGAGTCTAATA
GAGATGGCATCGACGGATAGACTGATGTTTGCTTTTTGTGTGGAGGCGGT
CTTATTTTGGGTGTTTCAGGGTTGGTTAGTGGATGATGATATGATGAGGA
GGACGGGAGCAAAAGAAAGCGGGTCATTGGGGGAGATTCTTGTACCGTCG
GTGGCCAAGGTGGTGCCGTTTGTAGGTTTGTTCATGTATATGATGTGGAG
GCCGCCATTGATGGACAGAGGGGAGGGAAAGATAGAGGAGGAGGGAGGAA
GGATTTGA back to top
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