jgi.p|Nanoce1779_2|571686, mRNA_1308 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571686
Unique Name	mRNA_1308
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1758
Alignment location	scaffold_1:243762..245666 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	571772
Track	FilteredModels2
ProteinId	571686

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:243762..245666 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571686	gene_1308	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571686	mRNA_1308-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1308	CDS_1308	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:243762..245666+
coding sequence from alignment at scaffold_1:243762..245666+

mRNA sequence

>mRNA_1308 ID=mRNA_1308|Name=jgi.p|Nanoce1779_2|571686|organism=Nannochloropsis oceanica|type=mRNA|length=1758bp
CAGGATGTCTCCCGTTGCGGAAGATGAGCAGGCTTCAATTAAGAACTCAA
AGGAAGATGCCAACACTAACGCCGTAGCTATCCACGACCTTGACTACGAC
GTCCCCCCAGAGGAGCTTACACCAATCTCCGCAATATACTATGTCTCACC
CGGCGGGCGCGGACTGTCGGAGAAGGAGTTCTTCTCCTCCGATCCGGACG
CTAGCAGTGATGATGATGAGTGTACCGGGCAAAATAGCCCCAGTGTCCTC
AAGGAAAATGTATCAGCACCCCCTGAAAGATTCTCGCAGCGTCTCGCCAC
CATTTTGGTTGCAGGTGCAGGTTTCTTGGCCGACTCCTACGACCTTTTCG
TCATCAATATTGTCTTGATTATGATGAAGCAAAACGAGAGCTACGGCCCC
TTGACACCGGACGTGCAGACCCAATGCTCGTTTATGGCCATCATTGGTGC
CGCCGTAGGCCAGCTTCTTTTCGGTTTTCTTGGGGATCAATACGGGCGTC
GTCGCATGTTCCTCCTTACGGCCATCCTGACCATTTTAGGGAATATTTTG
CAAGCAAGCGCTCAACCGCGCGAGCGCTTGGGGATATATCAACAGATGAT
GCTGTTTAGGTTTATCATGGGCATTGGGGTAGGGGGCGAATACCCGACCG
CCAGCATCATTACGAGCGAGAATTCCTCTAATTGGACCCGGGGACGGAAC
CTGGCCGCTGTCTTTTCTATGCAAGGCGTCGGTCGCTTGCTCTGCGCGGT
GATCCTTCTCATCTGTGCCCACACCATCGAGGACACAAACATACAGTGGC
GAGTAGCAGTGATTGTAGGGGCCTTACCAATGATGATTGCCGTGTTTTAT
CGATGGCTTCCTGAGACGGCCATCTTCCGCGAACAAGTCCAAGCCCGGTA
CCCGAATATGCGCGAGCGTTTTAAGGTCATCTGGAGGACCGTGTGGGAGA
ACCGTCGAGCTCTTACGGGCACCGCTGGTTCTTGGTTTATTTTGGATATG
TTGTTTTATGGCAATTCTCTTTTCTCGGCCGACGTGACGGCAAGGATAGG
CTTGGAGGATAGCATCAGAGGGCTCACTGTCCAGAACCTTATCATTCAAT
CCATGGCCATGCCCGGCTATATTCTCGCTGTCCTCTTTATCGACTACATC
GGCAAGAAACGTTTGCAGCTGATAGGGTTCTTTGGGGAGGGAGTGATTTT
TGCGGTCATGGCTGTGTTTCATTCCCGGCTTAAGCGGACTCCGCAAGTAT
TTTTGGTCATGTATGCCCTTACTTTCCTCTTTGATAATTTTGGGGCCAAT
ACTTCGACTTTCGTCATTCCTGCTGTAATTTACCCCACGGAAGCCCGCTC
GACCTGCCATGGGATCTCGGCGGCGTTTGGGAAAGCAGGGGCGGTGGTAG
GTGCGAGTGTATTTCTGAATATAGTGACAATGCACTGTCCCAATCACGTG
TGCAGCGAGGACGTGGATTCGGCGTTGGTAGACAGGGGTATCAAGACCGT
GTTTTATTGGTGCGCCATGCTCTCCCTTGTCGGCTTTCTGTGGACATGCG
TCTTGGTCCACGATAAACGCCACAGGTCGCTTGATTGCAACGGGCCGCTG
CAAGCGCCGGCCACTTCTCCCGAGTATCAAATGACTTGAGCGGCAGCAGA
TGCGAATAATTAAAGAATGGAGGAAATGTGAATACAAAGATGAAAGGGGA
ATAGAGCATAAACATGGTTCCCCGCAAGATCCGGGCACGACAAACAGCAG
CAGCAAAG

protein sequence of jgi.p|Nanoce1779_2|571686

>mRNA_1308-protein ID=mRNA_1308-protein|Name=jgi.p|Nanoce1779_2|571686|organism=Nannochloropsis oceanica|type=polypeptide|length=545bp
MSPVAEDEQASIKNSKEDANTNAVAIHDLDYDVPPEELTPISAIYYVSPG
GRGLSEKEFFSSDPDASSDDDECTGQNSPSVLKENVSAPPERFSQRLATI
LVAGAGFLADSYDLFVINIVLIMMKQNESYGPLTPDVQTQCSFMAIIGAA
VGQLLFGFLGDQYGRRRMFLLTAILTILGNILQASAQPRERLGIYQQMML
FRFIMGIGVGGEYPTASIITSENSSNWTRGRNLAAVFSMQGVGRLLCAVI
LLICAHTIEDTNIQWRVAVIVGALPMMIAVFYRWLPETAIFREQVQARYP
NMRERFKVIWRTVWENRRALTGTAGSWFILDMLFYGNSLFSADVTARIGL
EDSIRGLTVQNLIIQSMAMPGYILAVLFIDYIGKKRLQLIGFFGEGVIFA
VMAVFHSRLKRTPQVFLVMYALTFLFDNFGANTSTFVIPAVIYPTEARST
CHGISAAFGKAGAVVGASVFLNIVTMHCPNHVCSEDVDSALVDRGIKTVF
YWCAMLSLVGFLWTCVLVHDKRHRSLDCNGPLQAPATSPEYQMT*

mRNA from alignment at scaffold_1:243762..245666+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1308 ID=mRNA_1308|Name=jgi.p|Nanoce1779_2|571686|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp|location=Sequence derived from alignment at scaffold_1:243762..245666+ (Nannochloropsis oceanica)
CAGGATGTCTCCCGTTGCGGAAGATGAGCAGGCTTCAATTAAGAACTCAA
AGGAAGATGCCAACACTAACGCCGTAGCTATCCACGACCTTGACTACGAC
GTCCCCCCAGAGGAGCTTACACCAATCTCCGCAATATACTATGTCTCACC
CGGCGGGCGCGGACTGTCGGAGAAGGAGTTCTTCTCCTCCGATCCGGACG
CTAGCAGTGATGATGATGAGTGTACCGGGCAAAATAGCCCCAGTGTCCTC
AAGGAAAATGTATCAGCACCCCCTGAAAGATTCTCGCAGCGTCTCGCCAC
CATTTTGGTTGCAGGTGCAGGTTTCTTGGCCGACTCCTACGACCTTTTCG
TCATCAATATTGTCTTGATTATGATGAAGCAAAACGAGAGCTACGGCCCC
TTGACACCGGACGTGCAGACCCAATGCTCGTTTATGGCCATCATTGGTGC
CGCCGTAGGCCAGCTTCTTTTCGGTTTTCTTGGGGATCAATACGGGCGTC
GTCGCATGTTCCTCCTTACGGCCATCCTGACCATTTTAGGGAATATTTTG
CAAGCAAGCGCTCAACCGCGCGAGCGCTTGGGGATATATCAACAGATGAT
GCTGTTTAGGTTTATCATGGGCATTGGGGTAGGGGGCGAATACCCGACCG
CCAGCATCATTACGAGCGAGAATTCCTCTAATTGGACCCGGGGACGGAAC
CTGGCCGCTGTCTTTTCTATGCAAGGCGTCGGTCGCTTGCTCTGCGCGGT
GATCCTTCTCATCTGTGCCCACACCATCGAGGACACAAACATACAGTGGC
GAGTAGCAGTGATTGTAGGGGCCTTACCAATGATGATTGCCGTGTTTTAT
CGATGGCTTCCTGAGACGGCCATCTTCCGCGAACAAGTCCAAGCCCGGTA
CCCGAATATGCGCGAGCGTTTTAAGGTCATCTGGAGGACCGTGTGGGAGA
ACCGTCGAGCTCTTACGGGCACCGCTGGTTCTTGGTTTATTTTGGATATG
TTGTTTTATGGCAATTCTCTTTTCTCGGCCGACGTGACGGCAAGGATAGG
CTTGGAGGATAGCATCAGAGGGCTCACTGTCCAGAACCTTATCATTCAAT
CCATGGCCATGCCCGGCTATATTCTCGCTGTCCTCTTTATCGACTACATC
GGCAAGAAACGTTTGCAGCTGATAGGGTTCTTTGGGGAGGGAGTGATTTT
TGCGGTCATGGCTGTGTTTCATTCCCGGCTTAAGCGGACTCCGCAAGTAT
TTTTGGTCATGTATGCCCTTACTTTCCTCTTTGATAATTTTGGGGCCAAT
ACTTCGACTTTCGTCATTCCTGCTGTAATTTACCCCACGGAAGCCCGCTC
GACCTGCCATGGGATCTCGGCGGCGTTTGGGAAAGCAGGGGCGGTGGTAG
GTGCGAGTGTATTTCTGAATATAGTGACAATGCACTGTCCCAATCACGTG
TGCAGCGAGGACGTGGATTCGGCGTTGGTAGACAGGGGTATCAAGACCGT
GTTTTATTGGTATGTAATATTTGACGGGGTCGTGAGAATTTCGCTAACTT
TCTTTTGAATGGTAGATCCTCCATTAATTGCGTATCTATAATTCGAAGTA
AAGCATGTTTCCTGATCCCTCCCCATTTCCCTCCCTGCTCTTATTGTTTC
CACCAGGTGCGCCATGCTCTCCCTTGTCGGCTTTCTGTGGACATGCGTCT
TGGTCCACGATAAACGCCACAGGTCGCTTGATTGCAACGGGCCGCTGCAA
GCGCCGGCCACTTCTCCCGAGTATCAAATGACTTGAGCGGCAGCAGATGC
GAATAATTAAAGAATGGAGGAAATGTGAATACAAAGATGAAAGGGGAATA
GAGCATAAACATGGTTCCCCGCAAGATCCGGGCACGACAAACAGCAGCAG
CAAAG

Coding sequence (CDS) from alignment at scaffold_1:243762..245666+

>mRNA_1308 ID=mRNA_1308|Name=jgi.p|Nanoce1779_2|571686|organism=Nannochloropsis oceanica|type=CDS|length=3270bp|location=Sequence derived from alignment at scaffold_1:243762..245666+ (Nannochloropsis oceanica)
ATGTCTCCCGTTGCGGAAGATGAGCAGGCTTCAATTAAGAACTCAAAGGA
AGATGCCAACACTAACGCCGTAGCTATCCACGACCTTGACTACGACGTCC
CCCCAGAGGAGCTTACACCAATCTCCGCAATATACTATGTCTCACCCGGC
GGGCGCGGACTGTCGGAGAAGGAGTTCTTCTCCTCCGATCCGGACGCTAG
CAGTGATGATGATGAGTGTACCGGGCAAAATAGCCCCAGTGTCCTCAAGG
AAAATGTATCAGCACCCCCTGAAAGATTCTCGCAGCGTCTCGCCACCATT
TTGGTTGCAGGTGCAGGTTTCTTGGCCGACTCCTACGACCTTTTCGTCAT
CAATATTGTCTTGATTATGATGAAGCAAAACGAGAGCTACGGCCCCTTGA
CACCGGACGTGCAGACCCAATGCTCGTTTATGGCCATCATTGGTGCCGCC
GTAGGCCAGCTTCTTTTCGGTTTTCTTGGGGATCAATACGGGCGTCGTCG
CATGTTCCTCCTTACGGCCATCCTGACCATTTTAGGGAATATTTTGCAAG
CAAGCGCTCAACCGCGCGAGCGCTTGGGGATATATCAACAGATGATGCTG
TTTAGGTTTATCATGGGCATTGGGGTAGGGGGCGAATACCCGACCGCCAG
CATCATTACGAGCGAGAATTCCTCTAATTGGACCCGGGGACGGAACCTGG
CCGCTGTCTTTTCTATGCAAGGCGTCGGTCGCTTGCTCTGCGCGGTGATC
CTTCTCATCTGTGCCCACACCATCGAGGACACAAACATACAGTGGCGAGT
AGCAGTGATTGTAGGGGCCTTACCAATGATGATTGCCGTGTTTTATCGAT
GGCTTCCTGAGACGGCCATCTTCCGCGAACAAGTCCAAGCCCGGTACCCG
AATATGCGCGAGCGTTTTAAGGTCATCTGGAGGACCGTGTGGGAGAACCG
TCGAGCTCTTACGGGCACCGCTGGTTCTTGGTTTATTTTGGATATGTTGT
TTTATGGCAATTCTCTTTTCTCGGCCGACGTGACGGCAAGGATAGGCTTG
GAGGATAGCATCAGAGGGCTCACTGTCCAGAACCTTATCATTCAATCCAT
GGCCATGCCCGGCTATATTCTCGCTGTCCTCTTTATCGACTACATCGGCA
AGAAACGTTTGCAGCTGATAGGGTTCTTTGGGGAGGGAGTGATTTTTGCG
GTCATGGCTGTGTTTCATTCCCGGCTTAAGCGGACTCCGCAAGTATTTTT
GGTCATGTATGCCCTTACTTTCCTCTTTGATAATTTTGGGGCCAATACTT
CGACTTTCGTCATTCCTGCTGTAATTTACCCCACGGAAGCCCGCTCGACC
TGCCATGGGATCTCGGCGGCGTTTGGGAAAGCAGGGGCGGTGGTAGGTGC
GAGTGTATTTCTGAATATAGTGACAATGCACTGTCCCAATCACGTGTGCA
GCGAGGACGTGGATTCGGCGTTGGTAGACAGGGGTATCAAGACCGTGTTT
TATTGGTGCGCCATGCTCTCCCTTGTCGGCTTTCTGTGGACATGCGTCTT
GGTCCACGATAAACGCCACAGGTCGCTTGATTGCAACGGGCCGCTGCAAG
CGCCGGCCACTTCTCCCGAGTATCAAATGACTTGAATGTCTCCCGTTGCG
GAAGATGAGCAGGCTTCAATTAAGAACTCAAAGGAAGATGCCAACACTAA
CGCCGTAGCTATCCACGACCTTGACTACGACGTCCCCCCAGAGGAGCTTA
CACCAATCTCCGCAATATACTATGTCTCACCCGGCGGGCGCGGACTGTCG
GAGAAGGAGTTCTTCTCCTCCGATCCGGACGCTAGCAGTGATGATGATGA
GTGTACCGGGCAAAATAGCCCCAGTGTCCTCAAGGAAAATGTATCAGCAC
CCCCTGAAAGATTCTCGCAGCGTCTCGCCACCATTTTGGTTGCAGGTGCA
GGTTTCTTGGCCGACTCCTACGACCTTTTCGTCATCAATATTGTCTTGAT
TATGATGAAGCAAAACGAGAGCTACGGCCCCTTGACACCGGACGTGCAGA
CCCAATGCTCGTTTATGGCCATCATTGGTGCCGCCGTAGGCCAGCTTCTT
TTCGGTTTTCTTGGGGATCAATACGGGCGTCGTCGCATGTTCCTCCTTAC
GGCCATCCTGACCATTTTAGGGAATATTTTGCAAGCAAGCGCTCAACCGC
GCGAGCGCTTGGGGATATATCAACAGATGATGCTGTTTAGGTTTATCATG
GGCATTGGGGTAGGGGGCGAATACCCGACCGCCAGCATCATTACGAGCGA
GAATTCCTCTAATTGGACCCGGGGACGGAACCTGGCCGCTGTCTTTTCTA
TGCAAGGCGTCGGTCGCTTGCTCTGCGCGGTGATCCTTCTCATCTGTGCC
CACACCATCGAGGACACAAACATACAGTGGCGAGTAGCAGTGATTGTAGG
GGCCTTACCAATGATGATTGCCGTGTTTTATCGATGGCTTCCTGAGACGG
CCATCTTCCGCGAACAAGTCCAAGCCCGGTACCCGAATATGCGCGAGCGT
TTTAAGGTCATCTGGAGGACCGTGTGGGAGAACCGTCGAGCTCTTACGGG
CACCGCTGGTTCTTGGTTTATTTTGGATATGTTGTTTTATGGCAATTCTC
TTTTCTCGGCCGACGTGACGGCAAGGATAGGCTTGGAGGATAGCATCAGA
GGGCTCACTGTCCAGAACCTTATCATTCAATCCATGGCCATGCCCGGCTA
TATTCTCGCTGTCCTCTTTATCGACTACATCGGCAAGAAACGTTTGCAGC
TGATAGGGTTCTTTGGGGAGGGAGTGATTTTTGCGGTCATGGCTGTGTTT
CATTCCCGGCTTAAGCGGACTCCGCAAGTATTTTTGGTCATGTATGCCCT
TACTTTCCTCTTTGATAATTTTGGGGCCAATACTTCGACTTTCGTCATTC
CTGCTGTAATTTACCCCACGGAAGCCCGCTCGACCTGCCATGGGATCTCG
GCGGCGTTTGGGAAAGCAGGGGCGGTGGTAGGTGCGAGTGTATTTCTGAA
TATAGTGACAATGCACTGTCCCAATCACGTGTGCAGCGAGGACGTGGATT
CGGCGTTGGTAGACAGGGGTATCAAGACCGTGTTTTATTGGTGCGCCATG
CTCTCCCTTGTCGGCTTTCTGTGGACATGCGTCTTGGTCCACGATAAACG
CCACAGGTCGCTTGATTGCAACGGGCCGCTGCAAGCGCCGGCCACTTCTC
CCGAGTATCAAATGACTTGA

Synonyms

Publications