jgi.p|Nanoce1779_2|571672, mRNA_1303 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|571672
Unique Name	mRNA_1303
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1935
Alignment location	scaffold_1:221973..223907 -

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Properties


Property Name	Value
TranscriptId	571758
Track	FilteredModels2
ProteinId	571672

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:221973..223907 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571672	gene_1303	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|571672	mRNA_1303-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1303	CDS_1303	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:221973..223907-
coding sequence from alignment at scaffold_1:221973..223907-

mRNA sequence

>mRNA_1303 ID=mRNA_1303|Name=jgi.p|Nanoce1779_2|571672|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp
TTCGAATGCGTCTATATTTCCTTCCTTTTGGTCGCGTTTGCGATTGTGGG
AAAAAGACAAGCACATTTTGTCATGGATAGGAATGAAATTGTTGTGGCTC
CTCAAGTGATTGCTGCTGGTCTGTCTCATAGTCGCAATATAGATATGTCC
GGGATGCTCTCTGCGTCTCGTCCATGACGACAAGACATAGAGGCCCCCAG
CGCCCTTTGTTTCTCCCGTAATCACTGTCTATTACTTCTCTTGCCCTAAT
ATTCCTTCTCTTTGATTTCTGTCATGTTAAGGCATGTTAAGACGACCATG
TTGTATGGTGGATGATTCACGCTAAAAGAGCAGAGTATACAGATCCAATA
TCTTCTTCTCGACCCATTCTCAAGTTTTGTAACTCTCTGTCTTTTCATCT
GTTGCTTCTATTGAATTTTCTTCCTCTCCTGCTCTCACTTTCCCTCTGTT
TTTTGTGTCGTGACAAGACTCTCCGATCGTCACATAACACGGCAGGTATA
AAAAGCTTTACGTCAATTGGATGAAAACATTGTGGATGGGGTCGGATTAA
TACCAGGCGCCACATCAAAAAAGAAAGGACAAGGCTGTATTCTCCATCAC
CCTCCCTTCCATCCCATTCAAATCTTCCCTCCCTTTCTCTCCACACTAAA
ATCTAGTATACCTCGTCTTATTATCTCTCTGTTTGCCAATTTGTAACGCG
CTCGGGACGCAAAGAGAAAAAGGGGACAGACCCCTCTGCTGCTTCCACAT
TCTCACACACGCACATGCATACACATCACACAACTTACTTGATCAGTCGC
TCTCTCGTTATCTTTCTCTTTCAATCTCCCCCACCCTTCCCTTTTCTCAC
AGGCACACACGCTCATGCACGCGGGTGCAATAATACACTTGTCCGCAGGC
AAGATTGAACAAATAACTGATAATGCTCGATTCTCATGTGAGACCATCCC
GTGTTCTTCTCGCTGCAAAATTTGGATCAGACGCGTACGTCCCCATCGCT
TGTAATCTCTCATGTCCTCTCTCACAAAGAACCTCCATCCGGTCATTCAT
TTTGTTTTACCTTTTTGTCGTCTTCTCAGTCACTTTCTCCATCACGAACT
CTTGTCCGCTGAGCGTTGAAAAAAAAGACAATCAAGGGGAAAAGAAAGAA
TGAGGTGTGTGGGTGGATAGGAAGGCGGGTCCGTGCATACACAGCAAAAC
TGCACAACTTTTCAATGCCTTAAGCCACCTTTGGTCCTTGGATCCATGTC
GTTTGTTGATGTCCTTGTCCTCGCACTTTGTCGATGTCTACTGCTCTTGG
TTTTCTTGTCGCCGTCGCTGTTGTTGTCGTCGTTGTCATCGTCGTCCTTG
TTCTCGGTGGTTTCGTTGTCACCGCGTTTTCCCTTCTTGTGATCGTGAAT
GGCTTTTCCGCTCTCTTTCTCATCATCACTAGCAAGTTTATTATACTCAC
TCTTTCTCATTCTCTCTCCCTTTCCTCCTACCCTGACACGCTTCTATTTC
TCTCTCTCGTTTGTTAATATTTGCCCTTTCCCTATAAATATCCCGGAATG
GATGTACTCCTTCTCAATTTCCTCTGTCCTCCATGGTATTTCATCGACTG
CTTTTCTTACTTATATCGCAGCCTGTCGACGTCACCCTCCAAAGGCACAC
GACAAGCTCCTTCTTTTTCTTTCTTCACAATTGACCGTCATCCACTCGGC
CGCCACGGAGACTGTGGTCCCTTGTCCTTACGGAAAGTTGCCGCTGCCGA
TGCCATTGACGAGGAGGAAAAGGACGAGTCTACCCGCATAACCTCCTCCT
CCGCCGCCTCCTCCCCCGATAAATTGACCATCATGATGATGATGATGCTG
CTTCTGCTGCTGCTTCTGCTGCTGCTATTTCTGCTGCTGGCGATGATGAT
AGGCCTGCTGCTGGTGGAAGGAGTCACGCGTCGTG

protein sequence of jgi.p|Nanoce1779_2|571672

>mRNA_1303-protein ID=mRNA_1303-protein|Name=jgi.p|Nanoce1779_2|571672|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MAFPLSFSSSLASLLYSLFLILSPFPPTLTRFYFSLSFVNICPFPINIPE
WMYSFSISSVLHGISSTAFLTYIAACRRHPPKAHDKLLLFLSSQLTVIHS
AATETVVPCPYGKLPLPMPLTRRKRTSLPA*

mRNA from alignment at scaffold_1:221973..223907-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1303 ID=mRNA_1303|Name=jgi.p|Nanoce1779_2|571672|organism=Nannochloropsis oceanica|type=mRNA|length=1935bp|location=Sequence derived from alignment at scaffold_1:221973..223907- (Nannochloropsis oceanica)
TTCGAATGCGTCTATATTTCCTTCCTTTTGGTCGCGTTTGCGATTGTGGG
AAAAAGACAAGCACATTTTGTCATGGATAGGAATGAAATTGTTGTGGCTC
CTCAAGTGATTGCTGCTGGTCTGTCTCATAGTCGCAATATAGATATGTCC
GGGATGCTCTCTGCGTCTCGTCCATGACGACAAGACATAGAGGCCCCCAG
CGCCCTTTGTTTCTCCCGTAATCACTGTCTATTACTTCTCTTGCCCTAAT
ATTCCTTCTCTTTGATTTCTGTCATGTTAAGGCATGTTAAGACGACCATG
TTGTATGGTGGATGATTCACGCTAAAAGAGCAGAGTATACAGATCCAATA
TCTTCTTCTCGACCCATTCTCAAGTTTTGTAACTCTCTGTCTTTTCATCT
GTTGCTTCTATTGAATTTTCTTCCTCTCCTGCTCTCACTTTCCCTCTGTT
TTTTGTGTCGTGACAAGACTCTCCGATCGTCACATAACACGGCAGGTATA
AAAAGCTTTACGTCAATTGGATGAAAACATTGTGGATGGGGTCGGATTAA
TACCAGGCGCCACATCAAAAAAGAAAGGACAAGGCTGTATTCTCCATCAC
CCTCCCTTCCATCCCATTCAAATCTTCCCTCCCTTTCTCTCCACACTAAA
ATCTAGTATACCTCGTCTTATTATCTCTCTGTTTGCCAATTTGTAACGCG
CTCGGGACGCAAAGAGAAAAAGGGGACAGACCCCTCTGCTGCTTCCACAT
TCTCACACACGCACATGCATACACATCACACAACTTACTTGATCAGTCGC
TCTCTCGTTATCTTTCTCTTTCAATCTCCCCCACCCTTCCCTTTTCTCAC
AGGCACACACGCTCATGCACGCGGGTGCAATAATACACTTGTCCGCAGGC
AAGATTGAACAAATAACTGATAATGCTCGATTCTCATGTGAGACCATCCC
GTGTTCTTCTCGCTGCAAAATTTGGATCAGACGCGTACGTCCCCATCGCT
TGTAATCTCTCATGTCCTCTCTCACAAAGAACCTCCATCCGGTCATTCAT
TTTGTTTTACCTTTTTGTCGTCTTCTCAGTCACTTTCTCCATCACGAACT
CTTGTCCGCTGAGCGTTGAAAAAAAAGACAATCAAGGGGAAAAGAAAGAA
TGAGGTGTGTGGGTGGATAGGAAGGCGGGTCCGTGCATACACAGCAAAAC
TGCACAACTTTTCAATGCCTTAAGCCACCTTTGGTCCTTGGATCCATGTC
GTTTGTTGATGTCCTTGTCCTCGCACTTTGTCGATGTCTACTGCTCTTGG
TTTTCTTGTCGCCGTCGCTGTTGTTGTCGTCGTTGTCATCGTCGTCCTTG
TTCTCGGTGGTTTCGTTGTCACCGCGTTTTCCCTTCTTGTGATCGTGAAT
GGCTTTTCCGCTCTCTTTCTCATCATCACTAGCAAGTTTATTATACTCAC
TCTTTCTCATTCTCTCTCCCTTTCCTCCTACCCTGACACGCTTCTATTTC
TCTCTCTCGTTTGTTAATATTTGCCCTTTCCCTATAAATATCCCGGAATG
GATGTACTCCTTCTCAATTTCCTCTGTCCTCCATGGTATTTCATCGACTG
CTTTTCTTACTTATATCGCAGCCTGTCGACGTCACCCTCCAAAGGCACAC
GACAAGCTCCTTCTTTTTCTTTCTTCACAATTGACCGTCATCCACTCGGC
CGCCACGGAGACTGTGGTCCCTTGTCCTTACGGAAAGTTGCCGCTGCCGA
TGCCATTGACGAGGAGGAAAAGGACGAGTCTACCCGCATAACCTCCTCCT
CCGCCGCCTCCTCCCCCGATAAATTGACCATCATGATGATGATGATGCTG
CTTCTGCTGCTGCTTCTGCTGCTGCTATTTCTGCTGCTGGCGATGATGAT
AGGCCTGCTGCTGGTGGAAGGAGTCACGCGTCGTG

Coding sequence (CDS) from alignment at scaffold_1:221973..223907-

>mRNA_1303 ID=mRNA_1303|Name=jgi.p|Nanoce1779_2|571672|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_1:221973..223907- (Nannochloropsis oceanica)
ATGGCTTTTCCGCTCTCTTTCTCATCATCACTAGCAAGTTTATTATACTC
ACTCTTTCTCATTCTCTCTCCCTTTCCTCCTACCCTGACACGCTTCTATT
TCTCTCTCTCGTTTGTTAATATTTGCCCTTTCCCTATAAATATCCCGGAA
TGGATGTACTCCTTCTCAATTTCCTCTGTCCTCCATGGTATTTCATCGAC
TGCTTTTCTTACTTATATCGCAGCCTGTCGACGTCACCCTCCAAAGGCAC
ACGACAAGCTCCTTCTTTTTCTTTCTTCACAATTGACCGTCATCCACTCG
GCCGCCACGGAGACTGTGGTCCCTTGTCCTTACGGAAAGTTGCCGCTGCC
GATGCCATTGACGAGGAGGAAAAGGACGAGTCTACCCGCATAA

Synonyms

Publications