jgi.p|Nanoce1779_2|571668, mRNA_1302 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571668
Unique NamemRNA_1302
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2007
Alignment locationscaffold_1:218876..221133 -

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Properties
Property NameValue
TranscriptId571754
TrackFilteredModels2
ProteinId571668
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:218876..221133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571668gene_1302Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571668mRNA_1302-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1302CDS_1302Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1302 ID=mRNA_1302|Name=jgi.p|Nanoce1779_2|571668|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp
CTGCTGCTGCTGCTGCTGCTGCTCCTCCTCAATATGGTCAAAGTCTGAAA
AATGTTGCCATGCCCACTCCTTGTCGACCGAGTACTTGCACCCAACGTGA
CAAGGATGTGTATAGTCCATCAAGTGATATCTCTTCTTCTCTGACGGCTG
CTTCCCGGCCAATAACGGGCACGTTGATCCCTTCGGGCACGGATGGCGGT
ACAACCGACTATGCTCCCTCGCGCTTGAATTCGACGCCCCCGCCCCCCTG
AGGATGTAGGGACAATTCCCTCCAACCGGGCACCGGGCCTTTGTCCTCCG
ATATGGGTGATCGAAATGCGTGCAGTGCTCAATGTCATTCCGTGGGCACC
CCGTCCCCTTCTGGCATATATGTACAAACGTCAACATATGATCCCGCCGA
TCTGAATCACTGACGCCCGGTAGATTCACCGCACCCGGTGTACACGTGCT
CAACGCAATCAGGCATGTCGGTCCCTTCGGACAAGGGTGGCGCAAAGCAC
GCAAGTGCCCAGGTTCGTCCAGCTTATCGCAGAAACGCCCTTGTGGACAA
CGGTAGAGCTTCTGCTTCGGATTCAAACCCAAGCCCATACCCATTCCGGC
AAGTCCAAGCGCGCTCAGGGCAGAGGAAGGGGAGGGAGGGTTGCCTCCAC
TGCCACCACCACCACCAAGCATCAACGTGGATGAAGGGCCGTAAGAGGGA
GGGTGATGGGGATGGAAGCTTCCTCCAGCTCCGCCAGCTACAGCAGCAGC
GACTGCTGCAGCAGCGGCGGGTGACGCCATCATGCTCCCGCCCAAGTTGT
GGTGGCTGGGGTGGTGATGGTGCTGAGTATGGCGTTGGTCCGCCTGCATA
TGATGTTGATAATGGTGGTGGTGTTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGTTGCTTGACGAAGG
CAGTTGATACTTCCGCAACAGACAGGGCCTTGCTGGTACTGCTGATGCCA
AAGGTGGGTCTCGCACTTGAAAACCCGGCACTACTGTTATTGCTGCCACT
GCTGCTGCTATAAACCATTCCACTCCCCGCCGCAGCCGCTGCCGGCCCTC
CAAGCATGAGCGGAGTAATGGATGCAGCCGCAGCTGCAGCTGAGGACCCT
GCATCTTTCGGAGGCGGAGGGGTGACCACCCCGCTCTCACAGCTGCTGCT
GTCACTGCTCGCTTTCACAGAAGGCGTATGCGACGCCAGCACCCATGAAC
GCTCAATCAAATCGTCTAACCACACAGCCTGCCCTGATCCCTTCCGTACA
TGCTGGTGAAGTTTCTCACTCAGCGTCTTGCGCCCTCCACATACCACCAC
TTGGTAGCCTGATCGCTCTGCGCGCTCAATCACGGGGTGTAAGTCCCCAT
CGCCCGTCACCACCACCAAGGCCGGCTGTGAGAAACAGGTCGAGGTAGCG
GCTGATGCAAGGGAAGAAGATGAGGACGCAGGGGAGGATGAGGCTGGGCC
ACCTTCGAAGGGCTCAAGAATCTCCAAGGCAAGCGCTAGGTCTACCCCTT
TATCGAGATAAATCTCTTTGTTCTGCTTCAGCCCCCCACCCACGCCGACC
GTCATCATGCGGGCCTTCAGCGGCTGTAGCACCACCTTGACATGTGCGCC
ATCTGGATGAGAGATGGAGCGATGAAACTGGTTGGGTTGGCCGTCGGGGG
TTGCTTGATAGAGTACCTTCTTCTCGAACGTCACATCCAGTCGATCCTCT
AGCAGAGACAACAGCGCCAAGTGGTCTACGCGTCCCTTGTGCCCTTCTCC
TGCCACCTTAAGCGACGCCTCCAGGTACGCACCGTCAACAATAAGCTTGG
CCCTATTGCGATGAATTGAGCTTGGAGCCCGGTCTTCAGATATGGACGCC
GACGTGCCTGCCGGGACGTTACTGCTGGTGGTATTGCTAGTGCTGCTGCC
ACCACCAGCGGCCACGTCTCTATCCCCTGTCGCTGCCCCGTCCTTGTTGC
TGTTACA
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protein sequence of jgi.p|Nanoce1779_2|571668

>mRNA_1302-protein ID=mRNA_1302-protein|Name=jgi.p|Nanoce1779_2|571668|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MSVPSDKGGAKHASAQVRPAYRRNALVDNGRASASDSNPSPYPFRQVQAR
SGQRKGREGCLHCHHHHQASTWMKGRKREGDGDGSFLQLRQLQQQRLLQQ
RRVTPSCSRPSCGGWGGDGAEYGVGPPAYDVDNGGGVAAAAAAAAAAAAA
AAAAAAAVA*
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mRNA from alignment at scaffold_1:218876..221133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1302 ID=mRNA_1302|Name=jgi.p|Nanoce1779_2|571668|organism=Nannochloropsis oceanica|type=mRNA|length=2258bp|location=Sequence derived from alignment at scaffold_1:218876..221133- (Nannochloropsis oceanica)
CTGCTGCTGCTGCTGCTGCTGCTCCTCCTCAATATGGTCAAAGTCTGAAA
AATGTTGCCATGCCCACTCCTTGTCGACCGAGTACTTGCACCCAACGTGA
CAAGGATGTGTATAGTCCATCAAGTGATATCTGTGGAAGGGAAAAAGGAA
TGAAGGGGATGTCATGGGAAGATTTTCGAAAGGTATTAAAACAACATTTA
TTTCGATGAAACGCCGTCTAACCCGTCACTCTTTCTTACCCCTAATCGAA
ATGTACCTTTCATCCCTCCTTCCCTCCCTCCCTCTTTGTACTCGCTGCTC
ATTCTCCGACAGCTGGATTCCCTTTAAGTACGAAAACAAACATACATTTC
CTTCCCTCCTCCCCTTCCTCTAGCTACGCACCTCTTCTTCTCTGACGGCT
GCTTCCCGGCCAATAACGGGCACGTTGATCCCTTCGGGCACGGATGGCGG
TACAACCGACTATGCTCCCTCGCGCTTGAATTCGACGCCCCCGCCCCCCT
GAGGATGTAGGGACAATTCCCTCCAACCGGGCACCGGGCCTTTGTCCTCC
GATATGGGTGATCGAAATGCGTGCAGTGCTCAATGTCATTCCGTGGGCAC
CCCGTCCCCTTCTGGCATATATGTACAAACGTCAACATATGATCCCGCCG
ATCTGAATCACTGACGCCCGGTAGATTCACCGCACCCGGTGTACACGTGC
TCAACGCAATCAGGCATGTCGGTCCCTTCGGACAAGGGTGGCGCAAAGCA
CGCAAGTGCCCAGGTTCGTCCAGCTTATCGCAGAAACGCCCTTGTGGACA
ACGGTAGAGCTTCTGCTTCGGATTCAAACCCAAGCCCATACCCATTCCGG
CAAGTCCAAGCGCGCTCAGGGCAGAGGAAGGGGAGGGAGGGTTGCCTCCA
CTGCCACCACCACCACCAAGCATCAACGTGGATGAAGGGCCGTAAGAGGG
AGGGTGATGGGGATGGAAGCTTCCTCCAGCTCCGCCAGCTACAGCAGCAG
CGACTGCTGCAGCAGCGGCGGGTGACGCCATCATGCTCCCGCCCAAGTTG
TGGTGGCTGGGGTGGTGATGGTGCTGAGTATGGCGTTGGTCCGCCTGCAT
ATGATGTTGATAATGGTGGTGGTGTTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGGTTGCTTGACGAAG
GCAGTTGATACTTCCGCAACAGACAGGGCCTTGCTGGTACTGCTGATGCC
AAAGGTGGGTCTCGCACTTGAAAACCCGGCACTACTGTTATTGCTGCCAC
TGCTGCTGCTATAAACCATTCCACTCCCCGCCGCAGCCGCTGCCGGCCCT
CCAAGCATGAGCGGAGTAATGGATGCAGCCGCAGCTGCAGCTGAGGACCC
TGCATCTTTCGGAGGCGGAGGGGTGACCACCCCGCTCTCACAGCTGCTGC
TGTCACTGCTCGCTTTCACAGAAGGCGTATGCGACGCCAGCACCCATGAA
CGCTCAATCAAATCGTCTAACCACACAGCCTGCCCTGATCCCTTCCGTAC
ATGCTGGTGAAGTTTCTCACTCAGCGTCTTGCGCCCTCCACATACCACCA
CTTGGTAGCCTGATCGCTCTGCGCGCTCAATCACGGGGTGTAAGTCCCCA
TCGCCCGTCACCACCACCAAGGCCGGCTGTGAGAAACAGGTCGAGGTAGC
GGCTGATGCAAGGGAAGAAGATGAGGACGCAGGGGAGGATGAGGCTGGGC
CACCTTCGAAGGGCTCAAGAATCTCCAAGGCAAGCGCTAGGTCTACCCCT
TTATCGAGATAAATCTCTTTGTTCTGCTTCAGCCCCCCACCCACGCCGAC
CGTCATCATGCGGGCCTTCAGCGGCTGTAGCACCACCTTGACATGTGCGC
CATCTGGATGAGAGATGGAGCGATGAAACTGGTTGGGTTGGCCGTCGGGG
GTTGCTTGATAGAGTACCTTCTTCTCGAACGTCACATCCAGTCGATCCTC
TAGCAGAGACAACAGCGCCAAGTGGTCTACGCGTCCCTTGTGCCCTTCTC
CTGCCACCTTAAGCGACGCCTCCAGGTACGCACCGTCAACAATAAGCTTG
GCCCTATTGCGATGAATTGAGCTTGGAGCCCGGTCTTCAGATATGGACGC
CGACGTGCCTGCCGGGACGTTACTGCTGGTGGTATTGCTAGTGCTGCTGC
CACCACCAGCGGCCACGTCTCTATCCCCTGTCGCTGCCCCGTCCTTGTTG
CTGTTACA
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Coding sequence (CDS) from alignment at scaffold_1:218876..221133-

>mRNA_1302 ID=mRNA_1302|Name=jgi.p|Nanoce1779_2|571668|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_1:218876..221133- (Nannochloropsis oceanica)
ATGTCGGTCCCTTCGGACAAGGGTGGCGCAAAGCACGCAAGTGCCCAGGT
TCGTCCAGCTTATCGCAGAAACGCCCTTGTGGACAACGGTAGAGCTTCTG
CTTCGGATTCAAACCCAAGCCCATACCCATTCCGGCAAGTCCAAGCGCGC
TCAGGGCAGAGGAAGGGGAGGGAGGGTTGCCTCCACTGCCACCACCACCA
CCAAGCATCAACGTGGATGAAGGGCCGTAAGAGGGAGGGTGATGGGGATG
GAAGCTTCCTCCAGCTCCGCCAGCTACAGCAGCAGCGACTGCTGCAGCAG
CGGCGGGTGACGCCATCATGCTCCCGCCCAAGTTGTGGTGGCTGGGGTGG
TGATGGTGCTGAGTATGGCGTTGGTCCGCCTGCATATGATGTTGATAATG
GTGGTGGTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCGGTTGCTTGA
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Synonyms
Publications