jgi.p|Nanoce1779_2|571660, mRNA_1301 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571660
Unique NamemRNA_1301
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length645
Alignment locationscaffold_1:216416..217539 +

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Properties
Property NameValue
TranscriptId571746
TrackFilteredModels2
ProteinId571660
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:216416..217539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571660gene_1301Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571660mRNA_1301-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1301CDS_1301Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1301 ID=mRNA_1301|Name=jgi.p|Nanoce1779_2|571660|organism=Nannochloropsis oceanica|type=mRNA|length=645bp
TCTGGGCATGGTGGGATACGACTCTATGGCAAGAGCCTTCTTCGATTTGC
TTCAAGCTGAGCTGTACTTGCGGAGCATGCGCCTGCAACATCATGCACTA
GGCGAGACCTCAACAGCTATTTCGCCCAAGGCGCTCTCCCTTCTCGTCTC
CCACCTCCTTTACTTTAAATTTCGGGGCAGTGGCACCGCCCCGATCATTG
CCGGGCTTGACCAGGATGGAACGTCGGTGTTATGCACGCAGGATTCCCTC
GGCGCGTATTCTTTCCAAGCTGATTTTGTGGCTTTGGGATCCTCGGCCAA
ATCGTTGCTAGGGGCATGCGAAGCTCTCTACCGTCCCAATTTGGAAGGGG
AGGCCCTGATGGAGCTTGCCTGCCGCTGTCTTAGGGCGGGGCTCGAGCGT
GACTGTGTGAGTGGGTACGGTATAGTGGTATACTTGGTCACAAAGCAGGG
GGTGGCACGCACACGGTTGCAAGGACGGATGGATTAGAGGGATTAGATTA
GTTTTATAGGCGGATGTACAGAGAAATGATGATCAAAGCAACAAAACTGA
TTAGTTGCTCAAGCGAAATGTTTGCAAGCAGGAGGGCGTCCTTGCTTGGC
ACATTTACCAAAAAAAAATAAAGAAAGAAATTGTTCTTTAGGAAG
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protein sequence of jgi.p|Nanoce1779_2|571660

>mRNA_1301-protein ID=mRNA_1301-protein|Name=jgi.p|Nanoce1779_2|571660|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MVGYDSMARAFFDLLQAELYLRSMRLQHHALGETSTAISPKALSLLVSHL
LYFKFRGSGTAPIIAGLDQDGTSVLCTQDSLGAYSFQADFVALGSSAKSL
LGACEALYRPNLEGEALMELACRCLRAGLERDCVSGYGIVVYLVTKQGVA
RTRLQGRMD*
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mRNA from alignment at scaffold_1:216416..217539+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1301 ID=mRNA_1301|Name=jgi.p|Nanoce1779_2|571660|organism=Nannochloropsis oceanica|type=mRNA|length=1124bp|location=Sequence derived from alignment at scaffold_1:216416..217539+ (Nannochloropsis oceanica)
TCTGGGCATGGTGGGATACGACTCTATGGCAAGAGCCTTCTTCGATTTGC
TTCAAGCTGAGCTGTACTTGCGGAGCATGCGCCTGCAACATCATGTACGT
TGCTCTATTACCTCTGTCTCCCATGCTGTAACCGTTCCTGTTCTTCCATG
CTCACATTCCCCTCCATCTCTTCCCATATTCCTCCTGTCCCTTCCTCAGG
CACTAGGCGAGACCTCAACAGCTATTTCGCCCAAGGCGCTCTCCCTTCTC
GTCTCCCACCTCCTTTACTTTAAATTTCGGGGCAGTGGCACCGCCCCGAT
CATTGCCGGGCTTGACCAGGATGGAACGTCGGTGTTATGCACGCAGGGTG
GGGAGAAGAAGACAAGGAGGGCAAGAAATGCAGGGGATTTGGGGAGGATA
GGAATGAGAGATGGGATGGATGCCTTAACTCCCAAATAAATACGCGCATA
CACTCATGATACATACCTACCCTTGTCTCACGTCTGTCCCTTCCCCATTC
ACTCCTCTTTGTCATTTGCACAGATTCCCTCGGCGCGTATTCTTTCCAAG
CTGATTTTGTGGCTTTGGGATCCTCGGCCAAATCGTTGCTAGGGGCATGC
GAAGTACGTTTTGGTGTCGAGATAGAGAGCATAATTTTCATCTTTGTTGA
TGTACTCCATCCACACGTTTTTTCTGAACCCCCCGCTACTTCTACCCTCT
GTAATTTTTCCTTGTCGAGTACTTCCTCCGCTTTCTATCTATCTTCTCGT
TCTTCTGGTTCTAATCCTCGTGTTCTCCCCCCCCCCCCCACACACCTACA
GGCTCTCTACCGTCCCAATTTGGAAGGGGAGGCCCTGATGGAGCTTGCCT
GCCGCTGTCTTAGGGCGGGGCTCGAGCGTGACTGTGTGAGTGGGTACGGT
ATAGTGGTATACTTGGTCACAAAGCAGGGGGTGGCACGCACACGGTTGCA
AGGACGGATGGATTAGAGGGATTAGATTAGTTTTATAGGCGGATGTACAG
AGAAATGATGATCAAAGCAACAAAACTGATTAGTTGCTCAAGCGAAATGT
TTGCAAGCAGGAGGGCGTCCTTGCTTGGCACATTTACCAAAAAAAAATAA
AGAAAGAAATTGTTCTTTAGGAAG
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Coding sequence (CDS) from alignment at scaffold_1:216416..217539+

>mRNA_1301 ID=mRNA_1301|Name=jgi.p|Nanoce1779_2|571660|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_1:216416..217539+ (Nannochloropsis oceanica)
ATGGTGGGATACGACTCTATGGCAAGAGCCTTCTTCGATTTGCTTCAAGC
TGAGCTGTACTTGCGGAGCATGCGCCTGCAACATCATGCACTAGGCGAGA
CCTCAACAGCTATTTCGCCCAAGGCGCTCTCCCTTCTCGTCTCCCACCTC
CTTTACTTTAAATTTCGGGGCAGTGGCACCGCCCCGATCATTGCCGGGCT
TGACCAGGATGGAACGTCGGTGTTATGCACGCAGGATTCCCTCGGCGCGT
ATTCTTTCCAAGCTGATTTTGTGGCTTTGGGATCCTCGGCCAAATCGTTG
CTAGGGGCATGCGAAGCTCTCTACCGTCCCAATTTGGAAGGGGAGGCCCT
GATGGAGCTTGCCTGCCGCTGTCTTAGGGCGGGGCTCGAGCGTGACTGTG
TGAGTGGGTACGGTATAGTGGTATACTTGGTCACAAAGCAGGGGGTGGCA
CGCACACGGTTGCAAGGACGGATGGATTAGATGGTGGGATACGACTCTAT
GGCAAGAGCCTTCTTCGATTTGCTTCAAGCTGAGCTGTACTTGCGGAGCA
TGCGCCTGCAACATCATGCACTAGGCGAGACCTCAACAGCTATTTCGCCC
AAGGCGCTCTCCCTTCTCGTCTCCCACCTCCTTTACTTTAAATTTCGGGG
CAGTGGCACCGCCCCGATCATTGCCGGGCTTGACCAGGATGGAACGTCGG
TGTTATGCACGCAGGATTCCCTCGGCGCGTATTCTTTCCAAGCTGATTTT
GTGGCTTTGGGATCCTCGGCCAAATCGTTGCTAGGGGCATGCGAAGCTCT
CTACCGTCCCAATTTGGAAGGGGAGGCCCTGATGGAGCTTGCCTGCCGCT
GTCTTAGGGCGGGGCTCGAGCGTGACTGTGTGAGTGGGTACGGTATAGTG
GTATACTTGGTCACAAAGCAGGGGGTGGCACGCACACGGTTGCAAGGACG
GATGGATTAGATGGTGGGATACGACTCTATGGCAAGAGCCTTCTTCGATT
TGCTTCAAGCTGAGCTGTACTTGCGGAGCATGCGCCTGCAACATCATGCA
CTAGGCGAGACCTCAACAGCTATTTCGCCCAAGGCGCTCTCCCTTCTCGT
CTCCCACCTCCTTTACTTTAAATTTCGGGGCAGTGGCACCGCCCCGATCA
TTGCCGGGCTTGACCAGGATGGAACGTCGGTGTTATGCACGCAGGATTCC
CTCGGCGCGTATTCTTTCCAAGCTGATTTTGTGGCTTTGGGATCCTCGGC
CAAATCGTTGCTAGGGGCATGCGAAGCTCTCTACCGTCCCAATTTGGAAG
GGGAGGCCCTGATGGAGCTTGCCTGCCGCTGTCTTAGGGCGGGGCTCGAG
CGTGACTGTGTGAGTGGGTACGGTATAGTGGTATACTTGGTCACAAAGCA
GGGGGTGGCACGCACACGGTTGCAAGGACGGATGGATTAGATGGTGGGAT
ACGACTCTATGGCAAGAGCCTTCTTCGATTTGCTTCAAGCTGAGCTGTAC
TTGCGGAGCATGCGCCTGCAACATCATGCACTAGGCGAGACCTCAACAGC
TATTTCGCCCAAGGCGCTCTCCCTTCTCGTCTCCCACCTCCTTTACTTTA
AATTTCGGGGCAGTGGCACCGCCCCGATCATTGCCGGGCTTGACCAGGAT
GGAACGTCGGTGTTATGCACGCAGGATTCCCTCGGCGCGTATTCTTTCCA
AGCTGATTTTGTGGCTTTGGGATCCTCGGCCAAATCGTTGCTAGGGGCAT
GCGAAGCTCTCTACCGTCCCAATTTGGAAGGGGAGGCCCTGATGGAGCTT
GCCTGCCGCTGTCTTAGGGCGGGGCTCGAGCGTGACTGTGTGAGTGGGTA
CGGTATAGTGGTATACTTGGTCACAAAGCAGGGGGTGGCACGCACACGGT
TGCAAGGACGGATGGATTAG
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Synonyms
Publications