jgi.p|Nanoce1779_2|575870, mRNA_13 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575870
Unique NamemRNA_13
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1292
Alignment locationscaffold_3:40705..41996 -

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Properties
Property NameValue
TranscriptId575956
TrackFilteredModels2
ProteinId575870
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:40705..41996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575870gene_13Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575870mRNA_13-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_13CDS_13Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_13 ID=mRNA_13|Name=jgi.p|Nanoce1779_2|575870|organism=Nannochloropsis oceanica|type=mRNA|length=1292bp
GGGCGGGGTTCGGAGCTCGTCCTGGCCAGGGAGGGAAACGCAGGGGCAGT
GGCACGGTTAAAGGGAGGAGGAGCCACGGACTGAGTGGTGGAGGAGGAGC
GGGGGGAAAAGGCGCTGCAGGGCAATTGAGACAGATCACCACTTCCACTG
TTGACTGGTGACTGTAGCTGCTCCCTGCTTTCCCTCCCATGTTTTCCTAT
TTTTGTCTCTCTTTCCCCATCATCTTCTCCTTCTTGGCTATCACTATCGC
TCTCCCCCTTCCCCTCTCTCTTCTCCTCGTCGTTCTTCTCTTCTTCCTTC
TACTCCTTTGCCTCCTCCTCCTTCTCCTTCAATTTGAAGCCGCTCTGCCT
CTTCTATCAATGATGCTAAGCACCTTTCCCCCTCCGCCAACCCCTGCTCT
TCCCCTGCTTCACAATTAACTTCATCTCTGCTTCTCTCGCTGTCCTTGTG
GCTCCTGCAGCTCATCATGGGGCTGCTGACGTCCGCAACATTACCGTTGT
GGACGCTGGTGCTGGTAGTACTGCTGTTGTCTCGATCTAATTCCTTTACA
GGCCCTTCGGCAGTGGGATTTGTAGAGAAGGAGGAGGAGGAGGAGGAGGA
GGAGACGCCGGGACGAGATGGGTTGGGAGTGCCAACGGGACGGGAAGCGC
TAGGCTCCCTCGCGTCGCCGCCACGCTCGGGCGTGGGACCAGCACTGTAA
GTTGAATATGAAAAAGGAGATGATGCAAGAAAGGGAGAAATGTGAGTGTG
CGGGTGCATGCTGTTAAATACCGCGGCATGCCTTGTCATAAACTTAGAGA
ACATAAGAATCGGATGCGATCGCCGTGCTTGCCTCCCTTCCATTCTTGCC
GCTATCGATATACTCCGGCAAGTACCTAGATCGCAGTGTGTCTGCCTCAT
TGTCATTGTCTCCACTAGCTTGCTTTCTGATTTCATTTCCCCCTTCCCAC
CTCATTGCATCTCCTTCTCCCCTCTCCACCGGACACGCGTCATGCGCGCC
CTCCCTGCCCTCGCAGTCAACGTTCCCGTGCACGTGATTACCGCACACCT
TCCTCTGCGAGACGGAGTCCCGGGCCGCGGTGCTGCTGGTGGTGGCAGCC
GCACTAGCAGTATTCGTGCCGCTCTCCTCGCTGCTATCGACGTCAATGGT
ATCCCGTCCAGCCACCCCCGCGCTCGGCCGGCGTCCTTTCATCTCGTCCC
CCAGGTCCGCGTCTAGGTTGCTCGTCCACTTTGATTGCTCAGGTCCTGGA
TGCAATCATCGGCTGACCTGTCGAAAAGTATTTGCCGGCCTG
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protein sequence of jgi.p|Nanoce1779_2|575870

>mRNA_13-protein ID=mRNA_13-protein|Name=jgi.p|Nanoce1779_2|575870|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MLLNTAACLVINLENIRIGCDRRACLPSILAAIDILRQVPRSQCVCLIVI
VSTSLLSDFISPFPPHCISFSPLHRTRVMRALPALAVNVPVHVITAHLPL
RDGVPGRGAAGGGSRTSSIRAALLAAIDVNGIPSSHPRARPASFHLVPQV
RV*
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mRNA from alignment at scaffold_3:40705..41996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13 ID=mRNA_13|Name=jgi.p|Nanoce1779_2|575870|organism=Nannochloropsis oceanica|type=mRNA|length=1292bp|location=Sequence derived from alignment at scaffold_3:40705..41996- (Nannochloropsis oceanica)
GGGCGGGGTTCGGAGCTCGTCCTGGCCAGGGAGGGAAACGCAGGGGCAGT
GGCACGGTTAAAGGGAGGAGGAGCCACGGACTGAGTGGTGGAGGAGGAGC
GGGGGGAAAAGGCGCTGCAGGGCAATTGAGACAGATCACCACTTCCACTG
TTGACTGGTGACTGTAGCTGCTCCCTGCTTTCCCTCCCATGTTTTCCTAT
TTTTGTCTCTCTTTCCCCATCATCTTCTCCTTCTTGGCTATCACTATCGC
TCTCCCCCTTCCCCTCTCTCTTCTCCTCGTCGTTCTTCTCTTCTTCCTTC
TACTCCTTTGCCTCCTCCTCCTTCTCCTTCAATTTGAAGCCGCTCTGCCT
CTTCTATCAATGATGCTAAGCACCTTTCCCCCTCCGCCAACCCCTGCTCT
TCCCCTGCTTCACAATTAACTTCATCTCTGCTTCTCTCGCTGTCCTTGTG
GCTCCTGCAGCTCATCATGGGGCTGCTGACGTCCGCAACATTACCGTTGT
GGACGCTGGTGCTGGTAGTACTGCTGTTGTCTCGATCTAATTCCTTTACA
GGCCCTTCGGCAGTGGGATTTGTAGAGAAGGAGGAGGAGGAGGAGGAGGA
GGAGACGCCGGGACGAGATGGGTTGGGAGTGCCAACGGGACGGGAAGCGC
TAGGCTCCCTCGCGTCGCCGCCACGCTCGGGCGTGGGACCAGCACTGTAA
GTTGAATATGAAAAAGGAGATGATGCAAGAAAGGGAGAAATGTGAGTGTG
CGGGTGCATGCTGTTAAATACCGCGGCATGCCTTGTCATAAACTTAGAGA
ACATAAGAATCGGATGCGATCGCCGTGCTTGCCTCCCTTCCATTCTTGCC
GCTATCGATATACTCCGGCAAGTACCTAGATCGCAGTGTGTCTGCCTCAT
TGTCATTGTCTCCACTAGCTTGCTTTCTGATTTCATTTCCCCCTTCCCAC
CTCATTGCATCTCCTTCTCCCCTCTCCACCGGACACGCGTCATGCGCGCC
CTCCCTGCCCTCGCAGTCAACGTTCCCGTGCACGTGATTACCGCACACCT
TCCTCTGCGAGACGGAGTCCCGGGCCGCGGTGCTGCTGGTGGTGGCAGCC
GCACTAGCAGTATTCGTGCCGCTCTCCTCGCTGCTATCGACGTCAATGGT
ATCCCGTCCAGCCACCCCCGCGCTCGGCCGGCGTCCTTTCATCTCGTCCC
CCAGGTCCGCGTCTAGGTTGCTCGTCCACTTTGATTGCTCAGGTCCTGGA
TGCAATCATCGGCTGACCTGTCGAAAAGTATTTGCCGGCCTG
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Coding sequence (CDS) from alignment at scaffold_3:40705..41996-

>mRNA_13 ID=mRNA_13|Name=jgi.p|Nanoce1779_2|575870|organism=Nannochloropsis oceanica|type=CDS|length=459bp|location=Sequence derived from alignment at scaffold_3:40705..41996- (Nannochloropsis oceanica)
ATGCTGTTAAATACCGCGGCATGCCTTGTCATAAACTTAGAGAACATAAG
AATCGGATGCGATCGCCGTGCTTGCCTCCCTTCCATTCTTGCCGCTATCG
ATATACTCCGGCAAGTACCTAGATCGCAGTGTGTCTGCCTCATTGTCATT
GTCTCCACTAGCTTGCTTTCTGATTTCATTTCCCCCTTCCCACCTCATTG
CATCTCCTTCTCCCCTCTCCACCGGACACGCGTCATGCGCGCCCTCCCTG
CCCTCGCAGTCAACGTTCCCGTGCACGTGATTACCGCACACCTTCCTCTG
CGAGACGGAGTCCCGGGCCGCGGTGCTGCTGGTGGTGGCAGCCGCACTAG
CAGTATTCGTGCCGCTCTCCTCGCTGCTATCGACGTCAATGGTATCCCGT
CCAGCCACCCCCGCGCTCGGCCGGCGTCCTTTCATCTCGTCCCCCAGGTC
CGCGTCTAG
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Synonyms
Publications