jgi.p|Nanoce1779_2|571653, mRNA_1299 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571653
Unique NamemRNA_1299
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length923
Alignment locationscaffold_1:211595..212517 +

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Properties
Property NameValue
TranscriptId571739
TrackFilteredModels2
ProteinId571653
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:211595..212517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571653gene_1299Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571653mRNA_1299-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1299CDS_1299Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1299 ID=mRNA_1299|Name=jgi.p|Nanoce1779_2|571653|organism=Nannochloropsis oceanica|type=mRNA|length=923bp
GACAACCTTGACTCTCTTTGTTTTGCTTCATTCTCTCTTCTCCCTCTCCT
AGGACACGCATGCGCTTTTTGGGACCCTCCGCCACCTTTTTCTCTTTTTG
GTTGGCATTCATATCTTCGTTGATGTCTTTTCCCCTTTTCACTCCTCTCC
CCCCTCCCCTCCTGCCGGGTATTGTTTCGGACCACATTGCTCGTTGTCTA
CAAATTATAGTTTCGATGCGATCGCGTGGCATATTACCCTCCATCTTTCA
TTCTACATCTCCCTCCATAATTCTATCCCGGATAAATCGAGTAGAAAAAG
AAGAATTAATAAAAGTCAAACACACCACACTCCTTGAGCCCCTCTTAACC
TTACAATCAAAGACAAGCTTAATTTTCCGGCATGCGTAGCAGCAAAAGCG
ATGATGATGGCGGTGCTCAGCTGCTCCTTGTTCTTGTTGTGGCTGCTGTA
GCCGCTGTTGTTGCTTATGTCACGCGTGTCCACGTTAGGGCCCGCGTTCA
AGGATATCATAGCTGGTTCTCCTACCCGCCATCCCACGAAATGCTGCTGC
TGTTGCTGCTGCTGTTGTTCTCAGTTAAGCACCCCTGGTCTTCACTTGTC
AATATAGTTTACAGCCCGGGAGGCCGTGCAAGCCCTCCTCCGGCAGGAAG
GTGCGAGGAAGACGATGCCAAGCAGGACAAGAAAATCGACCCCGGGTAAT
CCATAACTTGAGACACACCGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTG
CTGCTGCTGCTGCTGCTGGTCGGAGTGAATCCAGCAGCAGTAGCAGCAGA
CGCCGCCGCCGCCGCCGCTGCTGACGTATCCCGATGCTGGTGCTGCTGCT
GCTGGTGGTGGTGGTGGTAGTGGTGCTGTTGCTGGTGTTGTTTGTTAAAG
ACATGGCCACACCACTCGCAGCA
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protein sequence of jgi.p|Nanoce1779_2|571653

>mRNA_1299-protein ID=mRNA_1299-protein|Name=jgi.p|Nanoce1779_2|571653|organism=Nannochloropsis oceanica|type=polypeptide|length=110bp
MRFLGPSATFFSFWLAFISSLMSFPLFTPLPPPLLPGIVSDHIARCLQII
VSMRSRGILPSIFHSTSPSIILSRINRVEKEELIKVKHTTLLEPLLTLQS
KTSLIFRHA*
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mRNA from alignment at scaffold_1:211595..212517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1299 ID=mRNA_1299|Name=jgi.p|Nanoce1779_2|571653|organism=Nannochloropsis oceanica|type=mRNA|length=923bp|location=Sequence derived from alignment at scaffold_1:211595..212517+ (Nannochloropsis oceanica)
GACAACCTTGACTCTCTTTGTTTTGCTTCATTCTCTCTTCTCCCTCTCCT
AGGACACGCATGCGCTTTTTGGGACCCTCCGCCACCTTTTTCTCTTTTTG
GTTGGCATTCATATCTTCGTTGATGTCTTTTCCCCTTTTCACTCCTCTCC
CCCCTCCCCTCCTGCCGGGTATTGTTTCGGACCACATTGCTCGTTGTCTA
CAAATTATAGTTTCGATGCGATCGCGTGGCATATTACCCTCCATCTTTCA
TTCTACATCTCCCTCCATAATTCTATCCCGGATAAATCGAGTAGAAAAAG
AAGAATTAATAAAAGTCAAACACACCACACTCCTTGAGCCCCTCTTAACC
TTACAATCAAAGACAAGCTTAATTTTCCGGCATGCGTAGCAGCAAAAGCG
ATGATGATGGCGGTGCTCAGCTGCTCCTTGTTCTTGTTGTGGCTGCTGTA
GCCGCTGTTGTTGCTTATGTCACGCGTGTCCACGTTAGGGCCCGCGTTCA
AGGATATCATAGCTGGTTCTCCTACCCGCCATCCCACGAAATGCTGCTGC
TGTTGCTGCTGCTGTTGTTCTCAGTTAAGCACCCCTGGTCTTCACTTGTC
AATATAGTTTACAGCCCGGGAGGCCGTGCAAGCCCTCCTCCGGCAGGAAG
GTGCGAGGAAGACGATGCCAAGCAGGACAAGAAAATCGACCCCGGGTAAT
CCATAACTTGAGACACACCGCTGCTGCTGCTGCTGCTGCCGCTGCTGCTG
CTGCTGCTGCTGCTGCTGGTCGGAGTGAATCCAGCAGCAGTAGCAGCAGA
CGCCGCCGCCGCCGCCGCTGCTGACGTATCCCGATGCTGGTGCTGCTGCT
GCTGGTGGTGGTGGTGGTAGTGGTGCTGTTGCTGGTGTTGTTTGTTAAAG
ACATGGCCACACCACTCGCAGCA
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Coding sequence (CDS) from alignment at scaffold_1:211595..212517+

>mRNA_1299 ID=mRNA_1299|Name=jgi.p|Nanoce1779_2|571653|organism=Nannochloropsis oceanica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_1:211595..212517+ (Nannochloropsis oceanica)
ATGCGCTTTTTGGGACCCTCCGCCACCTTTTTCTCTTTTTGGTTGGCATT
CATATCTTCGTTGATGTCTTTTCCCCTTTTCACTCCTCTCCCCCCTCCCC
TCCTGCCGGGTATTGTTTCGGACCACATTGCTCGTTGTCTACAAATTATA
GTTTCGATGCGATCGCGTGGCATATTACCCTCCATCTTTCATTCTACATC
TCCCTCCATAATTCTATCCCGGATAAATCGAGTAGAAAAAGAAGAATTAA
TAAAAGTCAAACACACCACACTCCTTGAGCCCCTCTTAACCTTACAATCA
AAGACAAGCTTAATTTTCCGGCATGCGTAG
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Synonyms
Publications