jgi.p|Nanoce1779_2|548894, mRNA_1298 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|548894
Unique Name	mRNA_1298
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2290
Alignment location	scaffold_1:209321..211610 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	548980
Track	FilteredModels2
ProteinId	548894

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:209321..211610 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|548894	gene_1298	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|548894	mRNA_1298-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1298	CDS_1298	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:209321..211610+
coding sequence from alignment at scaffold_1:209321..211610+

mRNA sequence

>mRNA_1298 ID=mRNA_1298|Name=jgi.p|Nanoce1779_2|548894|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp
ACAGGGCCGCCCTCCTTCAAGCGCAACACCCTACCTGTACCCCAGGGCGC
CCATCCTTCCTCATCCCCCCTCACCACAATGTTGGAGTACGACGACTCAG
CGTTCTACTACTTTTGCATGACGATGCTGAGCTTTTACATGCTCCCAGGG
ACCTATTACCTTGTGTTCAAGCAACTGCTTCCAGCCCTCATCCCGCGCAC
GGATGCCGGCCTGGTGCCCCGTACCGAGGCCGAGCGCCGTAAGGCCAAGC
AGCTGAAGGACGATGCACGGAGCAGCAATAAACTTATGTCATGCGGGGTA
ATTACCAACGCGGTCCTGTTGACTTTGACGTATGCATTGTTTATCTTTTT
GGTGCTGCGCGTGTGGAACGACGCTGAAATCGCTCAATTCGACCCGTATG
CTATCCTCGAGATTGCCACGGACGCTGAAGATCGCACCATTCGCAAGGCG
TATCGCTCGCTCTCTCTCAAGTGGCACCCGGACAAGAACATGGGCAACCA
GTACGCAGAGCAAATGTTCATGATGGTTCGTAAGGCCTACGAAGCCCTTA
CGGACGAAGTGGCCAAAGAAAACTGGCAAAAATACGGCAACCCCGACGGT
AAACAAGCGCTGGAAGTATCCATCGGTCTGCCTACTTTCCTGCTTGAAAA
AGACAATCACACGACGATCCTGTTGGTGTACCTGGTGGTCCTAGTGATTG
CCATTCCTCTGGCTGTGTACTGCTGGTATTCGGAGTCCCAGCAGTACGGC
GAAAACAACGTCATGCACAGGACTTACAATGACTACGCCGCACTCCTTGC
CGAAGCTACCCCCCCGCGCTATCTCCCCTCCATCCTCGTCACTTCCAACG
AGTGCGTCAAGGCCAACGCTTCCTCCACCTCCCCTCCTCCTTCCTCTACC
ACCCCCACTGCCCCCGGCACCGCTGGAGCCGCCATCGCTCTCATCCCTGG
CATGGACCCTGCAGAAGCTAAAGACCTTAACAGGCTAGTTACCGCGCTTG
GTCCAACCCGCCTCGTCAAACCCAAGCATGAGAAGCACTTGAAGGCCCTC
GCGGAGGTGACAAAAGGGAACGTGCTCCTCCACGCCTATCTCTACCGCCT
GGAGATCCCCCCACGATTCCACGAGAATCTGCGCAAGATGCTCTGCCTGT
CCGGAGACCTCATTGAGGCCATGCTGGAAATTCTGCAGAAAACCCGCTGG
CTGCAGACGGCCCTCGGGGTGCTCGACTTCCAACAGCAGCTGACGCAAGC
CATCATGGTGAGGGAGCCTGCGGACAGCCTGTACCAACTGCCTCATCTGA
CAGCGGTGGAGATGGGGCATATCACCAAGGGGAAGGGAAGCGTGAAATCA
ATTTTGGATTATTGTCGGCTACCGGATGAGCAGAAAAAGGGGTTGGCGGG
CTTGGGGGAGGCGGAGAAGGCGGACGTGTTGAAGGTGTGTGGGTTGCTGC
CGAGGCTAGAGGTCAAGACCGAGGTGCTGGTGGAGGACGAGACAGAGATT
GCGGAGGGGGACTTGGTCACTGTTAAGGTGACGATGACGCGGACAAATTT
ATCTGAAGGTGAGAATGCGGGCCCGGCGCACGCACCTTATTTCCCCGTCA
GTCGGAGAGAGGGATGGTGGGTGATTTTGGCTCATGGCCAGAAGATAATC
ATTGCGATGGAGAGGGTCGAGAACAAGGAGCGAACGTTCGTGCATGAGTT
GAAGGTATTCGGGCCGGGCATGCCATTAGAGGCGGGACATTACAAGTTTG
ATTTGTACGTGAAGAGTGATTGTTATGTGGGGTTGGATGTGGCGCAGAAA
GTGGAGTTCGATGTGATTAAGGCGAGCGATTTGCCCGAATATGTCCCTCA
TAAAGATGACTTGGAGCTGGATAACGAGCCGACTCTGTTTGAGAGCTTGG
CGGGGAATTTGGAGGACGACAGTGACTCAGACCTGGAAATGGAGGAGGAG
GGGGAGGAGGGAATGGACGGGGGAGAGGGCGAGAAGGAAAGGGGGGCGAA
GAAGGATGATTAAGTAGTGTGGAGGAGACGCTTTTTGAAGTAAGGAAAGA
AGGAATTCAAAAAATGAAAAGAGGATAAAGATTATATGTTTGCTTGAGTG
AGGGAGAGAAGAAGAGAGAAGAAAGTGGGCAGAAGCGAGAAAGAGAGAAA
TGGAGTATCAGTCGAGGGCAGCAGAAGTAGCTGCAGCAATAGCAGCCAAA
AAACATGCCATCAACAGGAACAAGAACAATTAACAGCAACAGATAGAGGA
TGAAGTAGAATTAAGAGGAAAAAAGACAACCTTGACTCTC

protein sequence of jgi.p|Nanoce1779_2|548894

>mRNA_1298-protein ID=mRNA_1298-protein|Name=jgi.p|Nanoce1779_2|548894|organism=Nannochloropsis oceanica|type=polypeptide|length=645bp
MLEYDDSAFYYFCMTMLSFYMLPGTYYLVFKQLLPALIPRTDAGLVPRTE
AERRKAKQLKDDARSSNKLMSCGVITNAVLLTLTYALFIFLVLRVWNDAE
IAQFDPYAILEIATDAEDRTIRKAYRSLSLKWHPDKNMGNQYAEQMFMMV
RKAYEALTDEVAKENWQKYGNPDGKQALEVSIGLPTFLLEKDNHTTILLV
YLVVLVIAIPLAVYCWYSESQQYGENNVMHRTYNDYAALLAEATPPRYLP
SILVTSNECVKANASSTSPPPSSTTPTAPGTAGAAIALIPGMDPAEAKDL
NRLVTALGPTRLVKPKHEKHLKALAEVTKGNVLLHAYLYRLEIPPRFHEN
LRKMLCLSGDLIEAMLEILQKTRWLQTALGVLDFQQQLTQAIMVREPADS
LYQLPHLTAVEMGHITKGKGSVKSILDYCRLPDEQKKGLAGLGEAEKADV
LKVCGLLPRLEVKTEVLVEDETEIAEGDLVTVKVTMTRTNLSEGENAGPA
HAPYFPVSRREGWWVILAHGQKIIIAMERVENKERTFVHELKVFGPGMPL
EAGHYKFDLYVKSDCYVGLDVAQKVEFDVIKASDLPEYVPHKDDLELDNE
PTLFESLAGNLEDDSDSDLEMEEEGEEGMDGGEGEKERGAKKDD*

mRNA from alignment at scaffold_1:209321..211610+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1298 ID=mRNA_1298|Name=jgi.p|Nanoce1779_2|548894|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp|location=Sequence derived from alignment at scaffold_1:209321..211610+ (Nannochloropsis oceanica)
ACAGGGCCGCCCTCCTTCAAGCGCAACACCCTACCTGTACCCCAGGGCGC
CCATCCTTCCTCATCCCCCCTCACCACAATGTTGGAGTACGACGACTCAG
CGTTCTACTACTTTTGCATGACGATGCTGAGCTTTTACATGCTCCCAGGG
ACCTATTACCTTGTGTTCAAGCAACTGCTTCCAGCCCTCATCCCGCGCAC
GGATGCCGGCCTGGTGCCCCGTACCGAGGCCGAGCGCCGTAAGGCCAAGC
AGCTGAAGGACGATGCACGGAGCAGCAATAAACTTATGTCATGCGGGGTA
ATTACCAACGCGGTCCTGTTGACTTTGACGTATGCATTGTTTATCTTTTT
GGTGCTGCGCGTGTGGAACGACGCTGAAATCGCTCAATTCGACCCGTATG
CTATCCTCGAGATTGCCACGGACGCTGAAGATCGCACCATTCGCAAGGCG
TATCGCTCGCTCTCTCTCAAGTGGCACCCGGACAAGAACATGGGCAACCA
GTACGCAGAGCAAATGTTCATGATGGTTCGTAAGGCCTACGAAGCCCTTA
CGGACGAAGTGGCCAAAGAAAACTGGCAAAAATACGGCAACCCCGACGGT
AAACAAGCGCTGGAAGTATCCATCGGTCTGCCTACTTTCCTGCTTGAAAA
AGACAATCACACGACGATCCTGTTGGTGTACCTGGTGGTCCTAGTGATTG
CCATTCCTCTGGCTGTGTACTGCTGGTATTCGGAGTCCCAGCAGTACGGC
GAAAACAACGTCATGCACAGGACTTACAATGACTACGCCGCACTCCTTGC
CGAAGCTACCCCCCCGCGCTATCTCCCCTCCATCCTCGTCACTTCCAACG
AGTGCGTCAAGGCCAACGCTTCCTCCACCTCCCCTCCTCCTTCCTCTACC
ACCCCCACTGCCCCCGGCACCGCTGGAGCCGCCATCGCTCTCATCCCTGG
CATGGACCCTGCAGAAGCTAAAGACCTTAACAGGCTAGTTACCGCGCTTG
GTCCAACCCGCCTCGTCAAACCCAAGCATGAGAAGCACTTGAAGGCCCTC
GCGGAGGTGACAAAAGGGAACGTGCTCCTCCACGCCTATCTCTACCGCCT
GGAGATCCCCCCACGATTCCACGAGAATCTGCGCAAGATGCTCTGCCTGT
CCGGAGACCTCATTGAGGCCATGCTGGAAATTCTGCAGAAAACCCGCTGG
CTGCAGACGGCCCTCGGGGTGCTCGACTTCCAACAGCAGCTGACGCAAGC
CATCATGGTGAGGGAGCCTGCGGACAGCCTGTACCAACTGCCTCATCTGA
CAGCGGTGGAGATGGGGCATATCACCAAGGGGAAGGGAAGCGTGAAATCA
ATTTTGGATTATTGTCGGCTACCGGATGAGCAGAAAAAGGGGTTGGCGGG
CTTGGGGGAGGCGGAGAAGGCGGACGTGTTGAAGGTGTGTGGGTTGCTGC
CGAGGCTAGAGGTCAAGACCGAGGTGCTGGTGGAGGACGAGACAGAGATT
GCGGAGGGGGACTTGGTCACTGTTAAGGTGACGATGACGCGGACAAATTT
ATCTGAAGGTGAGAATGCGGGCCCGGCGCACGCACCTTATTTCCCCGTCA
GTCGGAGAGAGGGATGGTGGGTGATTTTGGCTCATGGCCAGAAGATAATC
ATTGCGATGGAGAGGGTCGAGAACAAGGAGCGAACGTTCGTGCATGAGTT
GAAGGTATTCGGGCCGGGCATGCCATTAGAGGCGGGACATTACAAGTTTG
ATTTGTACGTGAAGAGTGATTGTTATGTGGGGTTGGATGTGGCGCAGAAA
GTGGAGTTCGATGTGATTAAGGCGAGCGATTTGCCCGAATATGTCCCTCA
TAAAGATGACTTGGAGCTGGATAACGAGCCGACTCTGTTTGAGAGCTTGG
CGGGGAATTTGGAGGACGACAGTGACTCAGACCTGGAAATGGAGGAGGAG
GGGGAGGAGGGAATGGACGGGGGAGAGGGCGAGAAGGAAAGGGGGGCGAA
GAAGGATGATTAAGTAGTGTGGAGGAGACGCTTTTTGAAGTAAGGAAAGA
AGGAATTCAAAAAATGAAAAGAGGATAAAGATTATATGTTTGCTTGAGTG
AGGGAGAGAAGAAGAGAGAAGAAAGTGGGCAGAAGCGAGAAAGAGAGAAA
TGGAGTATCAGTCGAGGGCAGCAGAAGTAGCTGCAGCAATAGCAGCCAAA
AAACATGCCATCAACAGGAACAAGAACAATTAACAGCAACAGATAGAGGA
TGAAGTAGAATTAAGAGGAAAAAAGACAACCTTGACTCTC

Coding sequence (CDS) from alignment at scaffold_1:209321..211610+

>mRNA_1298 ID=mRNA_1298|Name=jgi.p|Nanoce1779_2|548894|organism=Nannochloropsis oceanica|type=CDS|length=1935bp|location=Sequence derived from alignment at scaffold_1:209321..211610+ (Nannochloropsis oceanica)
ATGTTGGAGTACGACGACTCAGCGTTCTACTACTTTTGCATGACGATGCT
GAGCTTTTACATGCTCCCAGGGACCTATTACCTTGTGTTCAAGCAACTGC
TTCCAGCCCTCATCCCGCGCACGGATGCCGGCCTGGTGCCCCGTACCGAG
GCCGAGCGCCGTAAGGCCAAGCAGCTGAAGGACGATGCACGGAGCAGCAA
TAAACTTATGTCATGCGGGGTAATTACCAACGCGGTCCTGTTGACTTTGA
CGTATGCATTGTTTATCTTTTTGGTGCTGCGCGTGTGGAACGACGCTGAA
ATCGCTCAATTCGACCCGTATGCTATCCTCGAGATTGCCACGGACGCTGA
AGATCGCACCATTCGCAAGGCGTATCGCTCGCTCTCTCTCAAGTGGCACC
CGGACAAGAACATGGGCAACCAGTACGCAGAGCAAATGTTCATGATGGTT
CGTAAGGCCTACGAAGCCCTTACGGACGAAGTGGCCAAAGAAAACTGGCA
AAAATACGGCAACCCCGACGGTAAACAAGCGCTGGAAGTATCCATCGGTC
TGCCTACTTTCCTGCTTGAAAAAGACAATCACACGACGATCCTGTTGGTG
TACCTGGTGGTCCTAGTGATTGCCATTCCTCTGGCTGTGTACTGCTGGTA
TTCGGAGTCCCAGCAGTACGGCGAAAACAACGTCATGCACAGGACTTACA
ATGACTACGCCGCACTCCTTGCCGAAGCTACCCCCCCGCGCTATCTCCCC
TCCATCCTCGTCACTTCCAACGAGTGCGTCAAGGCCAACGCTTCCTCCAC
CTCCCCTCCTCCTTCCTCTACCACCCCCACTGCCCCCGGCACCGCTGGAG
CCGCCATCGCTCTCATCCCTGGCATGGACCCTGCAGAAGCTAAAGACCTT
AACAGGCTAGTTACCGCGCTTGGTCCAACCCGCCTCGTCAAACCCAAGCA
TGAGAAGCACTTGAAGGCCCTCGCGGAGGTGACAAAAGGGAACGTGCTCC
TCCACGCCTATCTCTACCGCCTGGAGATCCCCCCACGATTCCACGAGAAT
CTGCGCAAGATGCTCTGCCTGTCCGGAGACCTCATTGAGGCCATGCTGGA
AATTCTGCAGAAAACCCGCTGGCTGCAGACGGCCCTCGGGGTGCTCGACT
TCCAACAGCAGCTGACGCAAGCCATCATGGTGAGGGAGCCTGCGGACAGC
CTGTACCAACTGCCTCATCTGACAGCGGTGGAGATGGGGCATATCACCAA
GGGGAAGGGAAGCGTGAAATCAATTTTGGATTATTGTCGGCTACCGGATG
AGCAGAAAAAGGGGTTGGCGGGCTTGGGGGAGGCGGAGAAGGCGGACGTG
TTGAAGGTGTGTGGGTTGCTGCCGAGGCTAGAGGTCAAGACCGAGGTGCT
GGTGGAGGACGAGACAGAGATTGCGGAGGGGGACTTGGTCACTGTTAAGG
TGACGATGACGCGGACAAATTTATCTGAAGGTGAGAATGCGGGCCCGGCG
CACGCACCTTATTTCCCCGTCAGTCGGAGAGAGGGATGGTGGGTGATTTT
GGCTCATGGCCAGAAGATAATCATTGCGATGGAGAGGGTCGAGAACAAGG
AGCGAACGTTCGTGCATGAGTTGAAGGTATTCGGGCCGGGCATGCCATTA
GAGGCGGGACATTACAAGTTTGATTTGTACGTGAAGAGTGATTGTTATGT
GGGGTTGGATGTGGCGCAGAAAGTGGAGTTCGATGTGATTAAGGCGAGCG
ATTTGCCCGAATATGTCCCTCATAAAGATGACTTGGAGCTGGATAACGAG
CCGACTCTGTTTGAGAGCTTGGCGGGGAATTTGGAGGACGACAGTGACTC
AGACCTGGAAATGGAGGAGGAGGGGGAGGAGGGAATGGACGGGGGAGAGG
GCGAGAAGGAAAGGGGGGCGAAGAAGGATGATTAA

Synonyms

Publications