jgi.p|Nanoce1779_2|571651, mRNA_1297 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571651
Unique NamemRNA_1297
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length589
Alignment locationscaffold_1:208191..208779 -

Link to JBrowse

Properties
Property NameValue
TranscriptId571737
TrackFilteredModels2
ProteinId571651
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:208191..208779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571651gene_1297Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571651mRNA_1297-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1297CDS_1297Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1297 ID=mRNA_1297|Name=jgi.p|Nanoce1779_2|571651|organism=Nannochloropsis oceanica|type=mRNA|length=589bp
ACAGGGTGGGTGGCAGAGGGCGTGTGGCGGGCAAGACAAGAGTGACCCTC
AGCTCTTCAAGGCTACTGCCGCCACGAGGGCAAAGCCAACACGTACATCA
TGGCCGGCGCATCCTCAAGACGATCTATTTCGTTGCTGCAGCTGCTGATG
ATTCCCATGGCCTCCTGTTTGGCCTTTGCGGGCGTGCTGCCGTTGTCGTC
GCTGCATTTGCGTGGTCAAGGCTTGAGCATGGTCAGAGGATCGCCCTACT
GTGGGATCGGGGTACGTGCTGATGCAGGGAGATCAACCAGCAGAAGCTTG
CCAAGAGGGCGATCATTCTTCCTGTCCGTGCTGCGAACGCAGAGCTGCTT
GCATTCGAGTAGGGATGAGGAGCAGGTACATTTTAAAGGAGGCTCAGCGG
ATGTTGGTGGAGGCGGAATGAAGCATGCATACGTACCCTTGTAAATTCCT
TCTCCCTCATGTCACTTACACCCCACCCCTCCACTCGACCCCCAAATACA
CAAACAACAGCAGATTGATAAACAAGGCCACTCCAATGCCTGGATAGAAA
AAGGCGGTCTGGGCTTGGTGCGTGGCGGTGGCGGCGGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|571651

>mRNA_1297-protein ID=mRNA_1297-protein|Name=jgi.p|Nanoce1779_2|571651|organism=Nannochloropsis oceanica|type=polypeptide|length=115bp
MAGASSRRSISLLQLLMIPMASCLAFAGVLPLSSLHLRGQGLSMVRGSPY
CGIGVRADAGRSTSRSLPRGRSFFLSVLRTQSCLHSSRDEEQVHFKGGSA
DVGGGGMKHAYVPL*
back to top

mRNA from alignment at scaffold_1:208191..208779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1297 ID=mRNA_1297|Name=jgi.p|Nanoce1779_2|571651|organism=Nannochloropsis oceanica|type=mRNA|length=589bp|location=Sequence derived from alignment at scaffold_1:208191..208779- (Nannochloropsis oceanica)
ACAGGGTGGGTGGCAGAGGGCGTGTGGCGGGCAAGACAAGAGTGACCCTC
AGCTCTTCAAGGCTACTGCCGCCACGAGGGCAAAGCCAACACGTACATCA
TGGCCGGCGCATCCTCAAGACGATCTATTTCGTTGCTGCAGCTGCTGATG
ATTCCCATGGCCTCCTGTTTGGCCTTTGCGGGCGTGCTGCCGTTGTCGTC
GCTGCATTTGCGTGGTCAAGGCTTGAGCATGGTCAGAGGATCGCCCTACT
GTGGGATCGGGGTACGTGCTGATGCAGGGAGATCAACCAGCAGAAGCTTG
CCAAGAGGGCGATCATTCTTCCTGTCCGTGCTGCGAACGCAGAGCTGCTT
GCATTCGAGTAGGGATGAGGAGCAGGTACATTTTAAAGGAGGCTCAGCGG
ATGTTGGTGGAGGCGGAATGAAGCATGCATACGTACCCTTGTAAATTCCT
TCTCCCTCATGTCACTTACACCCCACCCCTCCACTCGACCCCCAAATACA
CAAACAACAGCAGATTGATAAACAAGGCCACTCCAATGCCTGGATAGAAA
AAGGCGGTCTGGGCTTGGTGCGTGGCGGTGGCGGCGGGG
back to top

Coding sequence (CDS) from alignment at scaffold_1:208191..208779-

>mRNA_1297 ID=mRNA_1297|Name=jgi.p|Nanoce1779_2|571651|organism=Nannochloropsis oceanica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_1:208191..208779- (Nannochloropsis oceanica)
ATGGCCGGCGCATCCTCAAGACGATCTATTTCGTTGCTGCAGCTGCTGAT
GATTCCCATGGCCTCCTGTTTGGCCTTTGCGGGCGTGCTGCCGTTGTCGT
CGCTGCATTTGCGTGGTCAAGGCTTGAGCATGGTCAGAGGATCGCCCTAC
TGTGGGATCGGGGTACGTGCTGATGCAGGGAGATCAACCAGCAGAAGCTT
GCCAAGAGGGCGATCATTCTTCCTGTCCGTGCTGCGAACGCAGAGCTGCT
TGCATTCGAGTAGGGATGAGGAGCAGGTACATTTTAAAGGAGGCTCAGCG
GATGTTGGTGGAGGCGGAATGAAGCATGCATACGTACCCTTGTAA
back to top
Synonyms
Publications