jgi.p|Nanoce1779_2|571650, mRNA_1296 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571650
Unique NamemRNA_1296
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length784
Alignment locationscaffold_1:207395..208190 -

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Properties
Property NameValue
TranscriptId571736
TrackFilteredModels2
ProteinId571650
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:207395..208190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571650gene_1296Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571650mRNA_1296-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1296CDS_1296Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1296 ID=mRNA_1296|Name=jgi.p|Nanoce1779_2|571650|organism=Nannochloropsis oceanica|type=mRNA|length=784bp
GTGCGGGAATCATCTCTGGAGGAGGGGAGGGAGGGGAAGGCAACAGCAAC
AAAAGCCCAGGGTCCTTGCTGTTGGTGGCAGCATTGGGCACGTTCAAAAG
CCTGTGGGGTCAGTACGCAGAGCTGTTGGAGAGTAAGCCCGTCGTGACGA
AGGCGATCACAGCAGGGCTCATTGCTTTATTTGGTGATATGCTCGCGCAA
CTCTTCGAGTACAAGTTGGCTTGTCGTCGCTTGGCAGAGGGGGAGGAAGC
TCCGCCGATGAAGCTTGATTTTTTGCGGTGTCTTGCGGTGACTATAGAGG
GTGTAGTCATCACCGGGCCGGGTTTGCATTACTTATATACAGCGTTGGAG
ACATGGATGCCTGCACAGAAGGGAGCATTGGCGGCTTTCACGCACGTGGC
GGTCGATGAGTTCATTTTTGATCCGCTCTTTGTCTTGTGTTTCTTCTTTC
TGTGTGGCTTGATCGAAGGGAAGAATTTGAGGACTGATATAGTGCCGCAG
GTGCAGAGGGAGTACTGGTCCGCGCTGAAGGGTGGGTGGGGGGTGTCGTT
GTTGTTTTTGCCGTTGGAATTTGCGACATTTAGATGCTTGCCGTTGAGGC
TGCGAGTATTGGTGGTGAATCTAACGGATGTAGTGTGGACTGCGGTGGTG
TCTTTTTTTGGGCATCGGGAACATTTGAAAGAGGTGGAGGCGGGGAGGAG
AGTGTGAGGGGAAGAAGGAGGAAGGAAAATGTGAGGGTTGTGTTTATAGC
TATGTACCTCAATTGGCGAGGAGGGAGGGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|571650

>mRNA_1296-protein ID=mRNA_1296-protein|Name=jgi.p|Nanoce1779_2|571650|organism=Nannochloropsis oceanica|type=polypeptide|length=173bp
MLAQLFEYKLACRRLAEGEEAPPMKLDFLRCLAVTIEGVVITGPGLHYLY
TALETWMPAQKGALAAFTHVAVDEFIFDPLFVLCFFFLCGLIEGKNLRTD
IVPQVQREYWSALKGGWGVSLLFLPLEFATFRCLPLRLRVLVVNLTDVVW
TAVVSFFGHREHLKEVEAGRRV*
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mRNA from alignment at scaffold_1:207395..208190-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1296 ID=mRNA_1296|Name=jgi.p|Nanoce1779_2|571650|organism=Nannochloropsis oceanica|type=mRNA|length=796bp|location=Sequence derived from alignment at scaffold_1:207395..208190- (Nannochloropsis oceanica)
GTGCGGGAATCATCTCTGGTGGTGGGGGAGGAGGAGGGGAGGGAGGGGAA
GGCAACAGCAACAAAAGCCCAGGGTCCTTGCTGTTGGTGGCAGCATTGGG
CACGTTCAAAAGCCTGTGGGGTCAGTACGCAGAGCTGTTGGAGAGTAAGC
CCGTCGTGACGAAGGCGATCACAGCAGGGCTCATTGCTTTATTTGGTGAT
ATGCTCGCGCAACTCTTCGAGTACAAGTTGGCTTGTCGTCGCTTGGCAGA
GGGGGAGGAAGCTCCGCCGATGAAGCTTGATTTTTTGCGGTGTCTTGCGG
TGACTATAGAGGGTGTAGTCATCACCGGGCCGGGTTTGCATTACTTATAT
ACAGCGTTGGAGACATGGATGCCTGCACAGAAGGGAGCATTGGCGGCTTT
CACGCACGTGGCGGTCGATGAGTTCATTTTTGATCCGCTCTTTGTCTTGT
GTTTCTTCTTTCTGTGTGGCTTGATCGAAGGGAAGAATTTGAGGACTGAT
ATAGTGCCGCAGGTGCAGAGGGAGTACTGGTCCGCGCTGAAGGGTGGGTG
GGGGGTGTCGTTGTTGTTTTTGCCGTTGGAATTTGCGACATTTAGATGCT
TGCCGTTGAGGCTGCGAGTATTGGTGGTGAATCTAACGGATGTAGTGTGG
ACTGCGGTGGTGTCTTTTTTTGGGCATCGGGAACATTTGAAAGAGGTGGA
GGCGGGGAGGAGAGTGTGAGGGGAAGAAGGAGGAAGGAAAATGTGAGGGT
TGTGTTTATAGCTATGTACCTCAATTGGCGAGGAGGGAGGGAGGGA
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Coding sequence (CDS) from alignment at scaffold_1:207395..208190-

>mRNA_1296 ID=mRNA_1296|Name=jgi.p|Nanoce1779_2|571650|organism=Nannochloropsis oceanica|type=CDS|length=519bp|location=Sequence derived from alignment at scaffold_1:207395..208190- (Nannochloropsis oceanica)
ATGCTCGCGCAACTCTTCGAGTACAAGTTGGCTTGTCGTCGCTTGGCAGA
GGGGGAGGAAGCTCCGCCGATGAAGCTTGATTTTTTGCGGTGTCTTGCGG
TGACTATAGAGGGTGTAGTCATCACCGGGCCGGGTTTGCATTACTTATAT
ACAGCGTTGGAGACATGGATGCCTGCACAGAAGGGAGCATTGGCGGCTTT
CACGCACGTGGCGGTCGATGAGTTCATTTTTGATCCGCTCTTTGTCTTGT
GTTTCTTCTTTCTGTGTGGCTTGATCGAAGGGAAGAATTTGAGGACTGAT
ATAGTGCCGCAGGTGCAGAGGGAGTACTGGTCCGCGCTGAAGGGTGGGTG
GGGGGTGTCGTTGTTGTTTTTGCCGTTGGAATTTGCGACATTTAGATGCT
TGCCGTTGAGGCTGCGAGTATTGGTGGTGAATCTAACGGATGTAGTGTGG
ACTGCGGTGGTGTCTTTTTTTGGGCATCGGGAACATTTGAAAGAGGTGGA
GGCGGGGAGGAGAGTGTGA
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Synonyms
Publications