jgi.p|Nanoce1779_2|571642, mRNA_1295 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571642
Unique NamemRNA_1295
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1501
Alignment locationscaffold_1:204608..206236 +

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Properties
Property NameValue
TranscriptId571728
TrackFilteredModels2
ProteinId571642
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:204608..206236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571642gene_1295Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571642mRNA_1295-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1295CDS_1295Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1295 ID=mRNA_1295|Name=jgi.p|Nanoce1779_2|571642|organism=Nannochloropsis oceanica|type=mRNA|length=1501bp
ACAGCACCATGAATAGGCCGGCGACATTCCGCATGCTGCCGCCCGAGTGC
TACGACCATATTGTGGGATTCCTGCGCTACAAAGATGTAAGTACTCACCA
AGACGTTGTAATGGGATTGCCAGGACAGCGAACGAGTGACGGAGGGCGGG
GTCGTGACAAAGACCATTCCATGCAACTGTCTCCCCCCTTGCGCGGGAGC
CACGTGTATTTGTGACTCACCTCGGTATTAACGTGGGTCCCCTTCCCGCA
GTGCCAGTCGATCCCTTAGTTCTTGTCGGACGCCGCTTTCGGGGGAAGGA
CCACTCCCTCCCTTTACTGATATGCAGACGTGCTAGAAGCCCTCCTTTCC
TCACCACAACTCTTCTTCTCATATCCCCTTGGGCGCATGCCACTGACCCG
TCCCACCCTTATCCTCTTCGGGGCGCAGACCACTTGAGTTGTATCGTTCC
ATAGGCGACGTGCCTTTCGAAAGAGCGGCCTTCCTTCGCCGTTTGTCGCT
GCTCCCTTCCCGACCCTCTCAGACCCTCTCAGACCCTCTTTTCCCCCCTC
CCTCACTTCCCTCCCTCCATCTCTACTCTCCACCTCCCAAACAGCTCGTC
CGCGTCTCCATGACAAGCGTGGACACTTGGATGGCCTACTTCCGGGTGCA
GAGCCGTTTGGAAGAATTACGGGCCAAGAATGTGAGAAGTCGGAGACGGC
GTCGCGCGCTGTTTGCCCAGCTCCGGGTATCCACGGGATTGAAAATTTTG
AGCCTTGTTAATGTCCAGCATCCCTGCACCAGCGTCCTATTCCGGCAGGT
CAGCGGTATGCATGGTCTTCAAGAACTCGACCTCTCTGCCAACGGGCTCA
AGGGCCCCCTCCCCCTCTCCATCGGTGACGACCTGCCCCTCCTCCGTGTC
CTCTCCCTCAGCAATAACGGGCTTACGGGCACCTTGCCACCGGGATGGGG
CAAGCTCCACCGTCTCGAGGACCTCAAATTATCGTTCAATTCCTTACAAG
GCAGCATCCCCGACTCCTGGGCCGGCATGATCTCCCTCCGGCACATCTCC
CTCTCCTACAACCAACTCTCCGGGCCCGTCCCCTCCTTCTTCTCCACCCT
CCGCGACCTTGAGACCCTGCTGTTGGGAGGGAACCGCTTTACTGGCGTTC
TCCCTCCGTCTCTGGGGGCATTAAGTCACATCAATTCCCTCTACCTCTTC
CAAAACGAACTCGAAGGCCCCATCCCTGACTCTCTCGGCTCGTGCGTCGC
CCTCCAAAAGCTGCTGTTGTCTCACAACAAGCTCACGGGGAAGCTTCCTT
CCTCCCTGGGTCGCCTCGAGAGCCTGAAAGAATTGAGTGTGAGTGGGAAC
GAGCTCGAGGGAGAGCTACCGCACGCGTTGGAAAAACTGGAGAAACTGCA
GACGCTTGATTTGGCCGATAATCGATTTGCGGCCGATGCACCAAGGAGCC
GGCAGGTGATCCGGGTCATGCGGACGAGGGATTGTCAGATTTATATGTAG
G
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protein sequence of jgi.p|Nanoce1779_2|571642

>mRNA_1295-protein ID=mRNA_1295-protein|Name=jgi.p|Nanoce1779_2|571642|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MTSVDTWMAYFRVQSRLEELRAKNVRSRRRRRALFAQLRVSTGLKILSLV
NVQHPCTSVLFRQVSGMHGLQELDLSANGLKGPLPLSIGDDLPLLRVLSL
SNNGLTGTLPPGWGKLHRLEDLKLSFNSLQGSIPDSWAGMISLRHISLSY
NQLSGPVPSFFSTLRDLETLLLGGNRFTGVLPPSLGALSHINSLYLFQNE
LEGPIPDSLGSCVALQKLLLSHNKLTGKLPSSLGRLESLKELSVSGNELE
GELPHALEKLEKLQTLDLADNRFAADAPRSRQVIRVMRTRDCQIYM*
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mRNA from alignment at scaffold_1:204608..206236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1295 ID=mRNA_1295|Name=jgi.p|Nanoce1779_2|571642|organism=Nannochloropsis oceanica|type=mRNA|length=1629bp|location=Sequence derived from alignment at scaffold_1:204608..206236+ (Nannochloropsis oceanica)
ACAGCACCATGAATAGGCCGGCGACATTCCGCATGCTGCCGCCCGAGTGC
TACGACCATATTGTGGGATTCCTGCGCTACAAAGATGTAAGTACTCACCA
AGACGTTGTAATGGGATTGCCAGGACAGCGAACGAGTGACGGAGGGCGGG
GTCGTGACAAAGACCATTCCATGCAACTGTCTCCCCCCTTGCGCGGGAGC
CACGTGTATTTGTGACTCACCTCGGTATTAACGTGGGTCCCCTTCCCGCA
GTGCCAGTCGATCCCTTAGTTCTTGTCGGACGCCGCTTTCGGGGGAAGGA
CCACTCCCTCCCTTTACTGATATGCAGACGTGCTAGAAGCCCTCCTTTCC
TCACCACAACTCTTCTTCTCATATCCCCTTGGGCGCATGCCACTGACCCG
TCCCACCCTTATCCTCTTCGGGGCGCAGACCACTTGAGTTGTATCGTTCC
ATAGGCGACGTGCCTTTCGAAAGAGCGGCCTTCCTTCGCCGTTTGTCGCT
GCTCCCTTCCCGACCCTCTCAGACCCTCTCAGACCCTCTTTTCCCCCCTC
CCTCACTTCCCTCCCTCCATCTCTACTCTCCACCTCCCAAACAGCTCGTC
CGCGTCTCCATGACAAGCGTGGACACTTGGATGGCCTACTTCCGGGTGCA
GAGCCGTTTGGAAGAATTACGGGCCAAGAATGTGAGAAGTCGGAGACGGC
GTCGCGCGCTGTTTGCCCAGCTCCGGGTATCCACGGGATTGAAAATTTTG
AGCCTTGTTAATGTCCAGCATCCCTGCACCAGTACGTTTGAATGCTTGAA
AATAGTGAGGAAGGAGGGAAGAAGGGAATTTACACAGAAGTAAGAAAGAA
AAGCTCCACTTATCTTCCCCCTTCCCTCTACCCCCCCCCCCCCTCCCTCT
TCCAATTAGGCGTCCTATTCCGGCAGGTCAGCGGTATGCATGGTCTTCAA
GAACTCGACCTCTCTGCCAACGGGCTCAAGGGCCCCCTCCCCCTCTCCAT
CGGTGACGACCTGCCCCTCCTCCGTGTCCTCTCCCTCAGCAATAACGGGC
TTACGGGCACCTTGCCACCGGGATGGGGCAAGCTCCACCGTCTCGAGGAC
CTCAAATTATCGTTCAATTCCTTACAAGGCAGCATCCCCGACTCCTGGGC
CGGCATGATCTCCCTCCGGCACATCTCCCTCTCCTACAACCAACTCTCCG
GGCCCGTCCCCTCCTTCTTCTCCACCCTCCGCGACCTTGAGACCCTGCTG
TTGGGAGGGAACCGCTTTACTGGCGTTCTCCCTCCGTCTCTGGGGGCATT
AAGTCACATCAATTCCCTCTACCTCTTCCAAAACGAACTCGAAGGCCCCA
TCCCTGACTCTCTCGGCTCGTGCGTCGCCCTCCAAAAGCTGCTGTTGTCT
CACAACAAGCTCACGGGGAAGCTTCCTTCCTCCCTGGGTCGCCTCGAGAG
CCTGAAAGAATTGAGTGTGAGTGGGAACGAGCTCGAGGGAGAGCTACCGC
ACGCGTTGGAAAAACTGGAGAAACTGCAGACGCTTGATTTGGCCGATAAT
CGATTTGCGGCCGATGCACCAAGGAGCCGGCAGGTGATCCGGGTCATGCG
GACGAGGGATTGTCAGATTTATATGTAGG
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Coding sequence (CDS) from alignment at scaffold_1:204608..206236+

>mRNA_1295 ID=mRNA_1295|Name=jgi.p|Nanoce1779_2|571642|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_1:204608..206236+ (Nannochloropsis oceanica)
ATGACAAGCGTGGACACTTGGATGGCCTACTTCCGGGTGCAGAGCCGTTT
GGAAGAATTACGGGCCAAGAATGTGAGAAGTCGGAGACGGCGTCGCGCGC
TGTTTGCCCAGCTCCGGGTATCCACGGGATTGAAAATTTTGAGCCTTGTT
AATGTCCAGCATCCCTGCACCAGCGTCCTATTCCGGCAGGTCAGCGGTAT
GCATGGTCTTCAAGAACTCGACCTCTCTGCCAACGGGCTCAAGGGCCCCC
TCCCCCTCTCCATCGGTGACGACCTGCCCCTCCTCCGTGTCCTCTCCCTC
AGCAATAACGGGCTTACGGGCACCTTGCCACCGGGATGGGGCAAGCTCCA
CCGTCTCGAGGACCTCAAATTATCGTTCAATTCCTTACAAGGCAGCATCC
CCGACTCCTGGGCCGGCATGATCTCCCTCCGGCACATCTCCCTCTCCTAC
AACCAACTCTCCGGGCCCGTCCCCTCCTTCTTCTCCACCCTCCGCGACCT
TGAGACCCTGCTGTTGGGAGGGAACCGCTTTACTGGCGTTCTCCCTCCGT
CTCTGGGGGCATTAAGTCACATCAATTCCCTCTACCTCTTCCAAAACGAA
CTCGAAGGCCCCATCCCTGACTCTCTCGGCTCGTGCGTCGCCCTCCAAAA
GCTGCTGTTGTCTCACAACAAGCTCACGGGGAAGCTTCCTTCCTCCCTGG
GTCGCCTCGAGAGCCTGAAAGAATTGAGTGTGAGTGGGAACGAGCTCGAG
GGAGAGCTACCGCACGCGTTGGAAAAACTGGAGAAACTGCAGACGCTTGA
TTTGGCCGATAATCGATTTGCGGCCGATGCACCAAGGAGCCGGCAGGTGA
TCCGGGTCATGCGGACGAGGGATTGTCAGATTTATATGTAGATGACAAGC
GTGGACACTTGGATGGCCTACTTCCGGGTGCAGAGCCGTTTGGAAGAATT
ACGGGCCAAGAATGTGAGAAGTCGGAGACGGCGTCGCGCGCTGTTTGCCC
AGCTCCGGGTATCCACGGGATTGAAAATTTTGAGCCTTGTTAATGTCCAG
CATCCCTGCACCAGCGTCCTATTCCGGCAGGTCAGCGGTATGCATGGTCT
TCAAGAACTCGACCTCTCTGCCAACGGGCTCAAGGGCCCCCTCCCCCTCT
CCATCGGTGACGACCTGCCCCTCCTCCGTGTCCTCTCCCTCAGCAATAAC
GGGCTTACGGGCACCTTGCCACCGGGATGGGGCAAGCTCCACCGTCTCGA
GGACCTCAAATTATCGTTCAATTCCTTACAAGGCAGCATCCCCGACTCCT
GGGCCGGCATGATCTCCCTCCGGCACATCTCCCTCTCCTACAACCAACTC
TCCGGGCCCGTCCCCTCCTTCTTCTCCACCCTCCGCGACCTTGAGACCCT
GCTGTTGGGAGGGAACCGCTTTACTGGCGTTCTCCCTCCGTCTCTGGGGG
CATTAAGTCACATCAATTCCCTCTACCTCTTCCAAAACGAACTCGAAGGC
CCCATCCCTGACTCTCTCGGCTCGTGCGTCGCCCTCCAAAAGCTGCTGTT
GTCTCACAACAAGCTCACGGGGAAGCTTCCTTCCTCCCTGGGTCGCCTCG
AGAGCCTGAAAGAATTGAGTGTGAGTGGGAACGAGCTCGAGGGAGAGCTA
CCGCACGCGTTGGAAAAACTGGAGAAACTGCAGACGCTTGATTTGGCCGA
TAATCGATTTGCGGCCGATGCACCAAGGAGCCGGCAGGTGATCCGGGTCA
TGCGGACGAGGGATTGTCAGATTTATATGTAG
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Synonyms
Publications