jgi.p|Nanoce1779_2|667264, mRNA_1294 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667264
Unique NamemRNA_1294
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2401
Alignment locationscaffold_1:201270..203670 -

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Properties
Property NameValue
TranscriptId667350
TrackFilteredModels2
ProteinId667264
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:201270..203670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667264gene_1294Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667264mRNA_1294-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1294CDS_1294Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1294 ID=mRNA_1294|Name=jgi.p|Nanoce1779_2|667264|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp
ACAGGGCCAACCATGTCCAGCCCTACCCCTACACTCGCGCCTGCCCCTGC
CTCCAAAGCGCAAGCGGACGACGGGCACGAGTGGCATGACGCCCGGGAAG
GGGACTTCCCGCCGCTTCCATCTTGGTCTTTATCCCTCCCCGACCCACAA
CAAGAGCTTCGTCAACGTAAAACTGCTTCGACCACTACCGTCGCTGAGCA
ACAGACCACTATTGAGTTGTCGTCCGTCTCGGCTTCCACCAGCTCTAGCA
CCGCTTCCACGCCTCCCCCTCCTCCAGCCGTGGAAAAGCGGTGGCCTATC
GAGTCCCGACGGCCCCTGGGTGGGTTTGAAACATTCTTCCATACCACGGT
GCCCTACGGACTCGGCTGCATCTACTATGTCATTGACTTTGAAGGACCTC
CCGACACGGACCTGCTGGCCGAAGCCATGAGTTTCCAAGTCAAGGAGCAT
CCCAACCTCCGTTCTCGCCTCCTCAATGGCTATTTGGAAGTCATTCCTTT
TAGTGCGTGTCCACAGATTGTTATCCCTTACATCGAATCAGAAGACGTGG
TGGGGCACACGGAACGATGGATGAAGGAAGCAACAGTCCTCAAGGCCGGC
CGTGAGCCCTACCTGTGGCAGCTGGCCCTGCACCATACACCCTCCTCCGA
GTCGCACCACCTCCTCTTTCTTATCCATCACGCCATTTCCGACGGTGATT
CCATCCTGCGCTGCCTTCAGTCCCTGATGACCGGCATGGCCTCCCTGTCC
CCCCTGTCCCCCCATGAGCGCGAGCGAAAATTGGAGCAAGTCAAGGCCTT
GCCGCAGCTCCCCAGCGCTGACGTCCAGTTGTACCCGCGCTACAATGGCT
ACTACCTCATTTACCACTTTCGGGGCTTGTTCAAAGAGCTCTGGAAAGTC
TTCCTCCGCCCTCGCATTCCTCGGCCATGCAAAATGACGCTTACGGAAAA
GGACCGGACTACTCGCATGTTCTCCTTCGTCCTGGACGCACCCGACTTCA
AGCGGCTGCTCAAAACGTGCAAGATGCAGCAAACTACCGTGACAGGCGCC
TTGGTCGCAGCCACCACGCAGGCGATGGAAGGGTTCATTGAACCGGAGCC
GAACCCGTTCAAGTTGAAGGTGGAGATTCTGGTCAATTTCCGCGGCAAGG
CGAGTGCTACCAAGGGGTCAGTTGAGTCCCATATGCTCTATGCGACTCCC
ATGGACGTGATGCTCGAGGCGGGTAACACCCCGGAGACGAGTCTGGATTT
CTGGAACACGGCTCGGATTGCCAAGCAAGAAATTGACGCATTTGCTACGG
AGCCGCACCGCATTGTGGATGCCTTAGAGTTCTTCTACGTGATGGGACAT
CACCCTATCGCCTTCCCCCTGATTCGACTGTTTGGCATTTCTCCCAAGCA
GGGACGACAGAAGGCTATTTCTATCTCCAATTTAGGAATGACGGATAAGC
TCTTTCAGCCCGCGGGGCCCTGGAGGCTAGGGCGTATGCAGATGGGGATC
GATGAGCTCTTGTTTGGACACAGTGTCTTCCTAGCCATGGCGTCCCATGA
AGGACGTTTGAATTTCACTCTATCGTATATTGATCCGATTGTTTCGCGGT
CCATGGCGGAGGACTATGCGCAGGCTGTCATCCGCTCATTGATTGAAGCT
TGCCCCCCGTTGGTGGGGGACGTGCCACCTACGCCGCAGACGCCTGTGTC
GATTACAGCCAAGCCTGCTTCTTCCTCTCACTCTACGGCAATCAATTTGC
TGAGCCAAGAGCCGCGGGGAGGGGGATTGGTCAGTGGTGCGGGCGGGGCG
GGTAGACTTGGAGCTGTTGGGGCTTCGGGCCCTGGGTCTACGAGCGCAGG
TGGCTCGCCTCGGGCAGCAACAGGAGCAGGAGGAGCAGGAGCAGGAGCAG
GAGGGTCAGTAGTGACCAGTGGAAGGGCAGGCGAGATGGGAGTCGTGAGC
CCGGCGGCGGGAGGAGGGTCTAGCGCGTTGTCCTCCTCATCGGGTGCCAG
GCCCAAGGTGCCGCGGATGGTGGCAGGCTCTTAAAGCCAAAAAAGACTTA
TAGATTATGGTTGGAGGGAGAGGGGGAAAGAGAGAAGAGGATAATCGAAT
GCGTAGGTCTTAACATTCGAGCATTACTTAATATACTTTAGTACCACCTT
TATATGCGATACATGTACGTGGTATGGGGCTGCACTTTCCTGTCAGCTGT
CGGAGAAACGGCGGATGCACACACCTTCCCATCTCCACCCGGAAAAGGGC
GGGGGAGAGTGTCCTTTATTATAGCTATCACGATTTGTAAAGTGAGGATA
ATTACGTGACAGCCGCATACTAGAAATCAATATTAAAACAAGCTAGGCAG
GGAGATACAGAGCTCTAGATGGTAAGAGAACAAATATACAACAAATTATA
C
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protein sequence of jgi.p|Nanoce1779_2|667264

>mRNA_1294-protein ID=mRNA_1294-protein|Name=jgi.p|Nanoce1779_2|667264|organism=Nannochloropsis oceanica|type=polypeptide|length=674bp
MSSPTPTLAPAPASKAQADDGHEWHDAREGDFPPLPSWSLSLPDPQQELR
QRKTASTTTVAEQQTTIELSSVSASTSSSTASTPPPPPAVEKRWPIESRR
PLGGFETFFHTTVPYGLGCIYYVIDFEGPPDTDLLAEAMSFQVKEHPNLR
SRLLNGYLEVIPFSACPQIVIPYIESEDVVGHTERWMKEATVLKAGREPY
LWQLALHHTPSSESHHLLFLIHHAISDGDSILRCLQSLMTGMASLSPLSP
HERERKLEQVKALPQLPSADVQLYPRYNGYYLIYHFRGLFKELWKVFLRP
RIPRPCKMTLTEKDRTTRMFSFVLDAPDFKRLLKTCKMQQTTVTGALVAA
TTQAMEGFIEPEPNPFKLKVEILVNFRGKASATKGSVESHMLYATPMDVM
LEAGNTPETSLDFWNTARIAKQEIDAFATEPHRIVDALEFFYVMGHHPIA
FPLIRLFGISPKQGRQKAISISNLGMTDKLFQPAGPWRLGRMQMGIDELL
FGHSVFLAMASHEGRLNFTLSYIDPIVSRSMAEDYAQAVIRSLIEACPPL
VGDVPPTPQTPVSITAKPASSSHSTAINLLSQEPRGGGLVSGAGGAGRLG
AVGASGPGSTSAGGSPRAATGAGGAGAGAGGSVVTSGRAGEMGVVSPAAG
GGSSALSSSSGARPKVPRMVAGS*
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mRNA from alignment at scaffold_1:201270..203670-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1294 ID=mRNA_1294|Name=jgi.p|Nanoce1779_2|667264|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp|location=Sequence derived from alignment at scaffold_1:201270..203670- (Nannochloropsis oceanica)
ACAGGGCCAACCATGTCCAGCCCTACCCCTACACTCGCGCCTGCCCCTGC
CTCCAAAGCGCAAGCGGACGACGGGCACGAGTGGCATGACGCCCGGGAAG
GGGACTTCCCGCCGCTTCCATCTTGGTCTTTATCCCTCCCCGACCCACAA
CAAGAGCTTCGTCAACGTAAAACTGCTTCGACCACTACCGTCGCTGAGCA
ACAGACCACTATTGAGTTGTCGTCCGTCTCGGCTTCCACCAGCTCTAGCA
CCGCTTCCACGCCTCCCCCTCCTCCAGCCGTGGAAAAGCGGTGGCCTATC
GAGTCCCGACGGCCCCTGGGTGGGTTTGAAACATTCTTCCATACCACGGT
GCCCTACGGACTCGGCTGCATCTACTATGTCATTGACTTTGAAGGACCTC
CCGACACGGACCTGCTGGCCGAAGCCATGAGTTTCCAAGTCAAGGAGCAT
CCCAACCTCCGTTCTCGCCTCCTCAATGGCTATTTGGAAGTCATTCCTTT
TAGTGCGTGTCCACAGATTGTTATCCCTTACATCGAATCAGAAGACGTGG
TGGGGCACACGGAACGATGGATGAAGGAAGCAACAGTCCTCAAGGCCGGC
CGTGAGCCCTACCTGTGGCAGCTGGCCCTGCACCATACACCCTCCTCCGA
GTCGCACCACCTCCTCTTTCTTATCCATCACGCCATTTCCGACGGTGATT
CCATCCTGCGCTGCCTTCAGTCCCTGATGACCGGCATGGCCTCCCTGTCC
CCCCTGTCCCCCCATGAGCGCGAGCGAAAATTGGAGCAAGTCAAGGCCTT
GCCGCAGCTCCCCAGCGCTGACGTCCAGTTGTACCCGCGCTACAATGGCT
ACTACCTCATTTACCACTTTCGGGGCTTGTTCAAAGAGCTCTGGAAAGTC
TTCCTCCGCCCTCGCATTCCTCGGCCATGCAAAATGACGCTTACGGAAAA
GGACCGGACTACTCGCATGTTCTCCTTCGTCCTGGACGCACCCGACTTCA
AGCGGCTGCTCAAAACGTGCAAGATGCAGCAAACTACCGTGACAGGCGCC
TTGGTCGCAGCCACCACGCAGGCGATGGAAGGGTTCATTGAACCGGAGCC
GAACCCGTTCAAGTTGAAGGTGGAGATTCTGGTCAATTTCCGCGGCAAGG
CGAGTGCTACCAAGGGGTCAGTTGAGTCCCATATGCTCTATGCGACTCCC
ATGGACGTGATGCTCGAGGCGGGTAACACCCCGGAGACGAGTCTGGATTT
CTGGAACACGGCTCGGATTGCCAAGCAAGAAATTGACGCATTTGCTACGG
AGCCGCACCGCATTGTGGATGCCTTAGAGTTCTTCTACGTGATGGGACAT
CACCCTATCGCCTTCCCCCTGATTCGACTGTTTGGCATTTCTCCCAAGCA
GGGACGACAGAAGGCTATTTCTATCTCCAATTTAGGAATGACGGATAAGC
TCTTTCAGCCCGCGGGGCCCTGGAGGCTAGGGCGTATGCAGATGGGGATC
GATGAGCTCTTGTTTGGACACAGTGTCTTCCTAGCCATGGCGTCCCATGA
AGGACGTTTGAATTTCACTCTATCGTATATTGATCCGATTGTTTCGCGGT
CCATGGCGGAGGACTATGCGCAGGCTGTCATCCGCTCATTGATTGAAGCT
TGCCCCCCGTTGGTGGGGGACGTGCCACCTACGCCGCAGACGCCTGTGTC
GATTACAGCCAAGCCTGCTTCTTCCTCTCACTCTACGGCAATCAATTTGC
TGAGCCAAGAGCCGCGGGGAGGGGGATTGGTCAGTGGTGCGGGCGGGGCG
GGTAGACTTGGAGCTGTTGGGGCTTCGGGCCCTGGGTCTACGAGCGCAGG
TGGCTCGCCTCGGGCAGCAACAGGAGCAGGAGGAGCAGGAGCAGGAGCAG
GAGGGTCAGTAGTGACCAGTGGAAGGGCAGGCGAGATGGGAGTCGTGAGC
CCGGCGGCGGGAGGAGGGTCTAGCGCGTTGTCCTCCTCATCGGGTGCCAG
GCCCAAGGTGCCGCGGATGGTGGCAGGCTCTTAAAGCCAAAAAAGACTTA
TAGATTATGGTTGGAGGGAGAGGGGGAAAGAGAGAAGAGGATAATCGAAT
GCGTAGGTCTTAACATTCGAGCATTACTTAATATACTTTAGTACCACCTT
TATATGCGATACATGTACGTGGTATGGGGCTGCACTTTCCTGTCAGCTGT
CGGAGAAACGGCGGATGCACACACCTTCCCATCTCCACCCGGAAAAGGGC
GGGGGAGAGTGTCCTTTATTATAGCTATCACGATTTGTAAAGTGAGGATA
ATTACGTGACAGCCGCATACTAGAAATCAATATTAAAACAAGCTAGGCAG
GGAGATACAGAGCTCTAGATGGTAAGAGAACAAATATACAACAAATTATA
C
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Coding sequence (CDS) from alignment at scaffold_1:201270..203670-

>mRNA_1294 ID=mRNA_1294|Name=jgi.p|Nanoce1779_2|667264|organism=Nannochloropsis oceanica|type=CDS|length=2022bp|location=Sequence derived from alignment at scaffold_1:201270..203670- (Nannochloropsis oceanica)
ATGTCCAGCCCTACCCCTACACTCGCGCCTGCCCCTGCCTCCAAAGCGCA
AGCGGACGACGGGCACGAGTGGCATGACGCCCGGGAAGGGGACTTCCCGC
CGCTTCCATCTTGGTCTTTATCCCTCCCCGACCCACAACAAGAGCTTCGT
CAACGTAAAACTGCTTCGACCACTACCGTCGCTGAGCAACAGACCACTAT
TGAGTTGTCGTCCGTCTCGGCTTCCACCAGCTCTAGCACCGCTTCCACGC
CTCCCCCTCCTCCAGCCGTGGAAAAGCGGTGGCCTATCGAGTCCCGACGG
CCCCTGGGTGGGTTTGAAACATTCTTCCATACCACGGTGCCCTACGGACT
CGGCTGCATCTACTATGTCATTGACTTTGAAGGACCTCCCGACACGGACC
TGCTGGCCGAAGCCATGAGTTTCCAAGTCAAGGAGCATCCCAACCTCCGT
TCTCGCCTCCTCAATGGCTATTTGGAAGTCATTCCTTTTAGTGCGTGTCC
ACAGATTGTTATCCCTTACATCGAATCAGAAGACGTGGTGGGGCACACGG
AACGATGGATGAAGGAAGCAACAGTCCTCAAGGCCGGCCGTGAGCCCTAC
CTGTGGCAGCTGGCCCTGCACCATACACCCTCCTCCGAGTCGCACCACCT
CCTCTTTCTTATCCATCACGCCATTTCCGACGGTGATTCCATCCTGCGCT
GCCTTCAGTCCCTGATGACCGGCATGGCCTCCCTGTCCCCCCTGTCCCCC
CATGAGCGCGAGCGAAAATTGGAGCAAGTCAAGGCCTTGCCGCAGCTCCC
CAGCGCTGACGTCCAGTTGTACCCGCGCTACAATGGCTACTACCTCATTT
ACCACTTTCGGGGCTTGTTCAAAGAGCTCTGGAAAGTCTTCCTCCGCCCT
CGCATTCCTCGGCCATGCAAAATGACGCTTACGGAAAAGGACCGGACTAC
TCGCATGTTCTCCTTCGTCCTGGACGCACCCGACTTCAAGCGGCTGCTCA
AAACGTGCAAGATGCAGCAAACTACCGTGACAGGCGCCTTGGTCGCAGCC
ACCACGCAGGCGATGGAAGGGTTCATTGAACCGGAGCCGAACCCGTTCAA
GTTGAAGGTGGAGATTCTGGTCAATTTCCGCGGCAAGGCGAGTGCTACCA
AGGGGTCAGTTGAGTCCCATATGCTCTATGCGACTCCCATGGACGTGATG
CTCGAGGCGGGTAACACCCCGGAGACGAGTCTGGATTTCTGGAACACGGC
TCGGATTGCCAAGCAAGAAATTGACGCATTTGCTACGGAGCCGCACCGCA
TTGTGGATGCCTTAGAGTTCTTCTACGTGATGGGACATCACCCTATCGCC
TTCCCCCTGATTCGACTGTTTGGCATTTCTCCCAAGCAGGGACGACAGAA
GGCTATTTCTATCTCCAATTTAGGAATGACGGATAAGCTCTTTCAGCCCG
CGGGGCCCTGGAGGCTAGGGCGTATGCAGATGGGGATCGATGAGCTCTTG
TTTGGACACAGTGTCTTCCTAGCCATGGCGTCCCATGAAGGACGTTTGAA
TTTCACTCTATCGTATATTGATCCGATTGTTTCGCGGTCCATGGCGGAGG
ACTATGCGCAGGCTGTCATCCGCTCATTGATTGAAGCTTGCCCCCCGTTG
GTGGGGGACGTGCCACCTACGCCGCAGACGCCTGTGTCGATTACAGCCAA
GCCTGCTTCTTCCTCTCACTCTACGGCAATCAATTTGCTGAGCCAAGAGC
CGCGGGGAGGGGGATTGGTCAGTGGTGCGGGCGGGGCGGGTAGACTTGGA
GCTGTTGGGGCTTCGGGCCCTGGGTCTACGAGCGCAGGTGGCTCGCCTCG
GGCAGCAACAGGAGCAGGAGGAGCAGGAGCAGGAGCAGGAGGGTCAGTAG
TGACCAGTGGAAGGGCAGGCGAGATGGGAGTCGTGAGCCCGGCGGCGGGA
GGAGGGTCTAGCGCGTTGTCCTCCTCATCGGGTGCCAGGCCCAAGGTGCC
GCGGATGGTGGCAGGCTCTTAA
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Synonyms
Publications