jgi.p|Nanoce1779_2|562088, mRNA_1291 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|562088
Unique NamemRNA_1291
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length993
Alignment locationscaffold_1:196298..197290 -

Link to JBrowse

Properties
Property NameValue
TranscriptId562174
TrackFilteredModels2
ProteinId562088
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:196298..197290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562088gene_1291Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1291CDS_1291Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562088mRNA_1291-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1291 ID=mRNA_1291|Name=jgi.p|Nanoce1779_2|562088|organism=Nannochloropsis oceanica|type=mRNA|length=993bp
ATGATTAAGTCGAGCTCCACTACCACCAGCACCTGGTCGCAAGCCCTGCC
CCCGCAATACTCCCTGATGATTGGCAACTTGCTGGTGCTCGCCAACTTCA
TCACGGCCCTGCTCGTGCCCTGGGTGGAAGCTCAGTACAAACTCTTTGAT
GCCTGGTTCCCCGTCTATGTGCCTGTCAGAATTGGGCTCCTCAAGTGCTT
CAGTGACGTCTGCTCGGCATTAACGGGGGCCGGCCGCCACCAAAATTCCG
TGCAGGATAAAGACAAAGGAGGAGACAGCAACTCGCCGCCGCCCATCCCA
GGATGGGGTCCGATGGGGGGCGACGGGGTTGATGGAGGTACGCCAGATGT
CGGAGGGGGAGGGGGAGCCAAAACGTTGTTTGAGGTGGCCGCCATATTTG
GTGTCATTCTCCTTAGCATATCAGTGCTCTTGGCCTTGGGCGGAGCATTG
GTAGAGGCCGCACGCATTCAAGGCCGACAAGATATTAGTGGCTTGTTTCC
TTTGCAGCTTTCGGTGGCATCGGCGATGGTGTGCTTGGTAGCGTTGCTTC
AGTACTTGTTCATCACACTTGCCGGTCTGCATGGAGGGCATTATTTGGTG
GGTTTCTGGCTTACGCTGGCCACGGCGGTGACGACAGGTGTCTTGAGCTT
GGGGCAGTACTTGGTGAACAAAAGCTTCTTTGACCAGGAGTACGGAGATG
GAGGATTATTTTTGCCAGCACACTTCAAGGGAGGGCAACGACCGACAAGG
CAGGTGCAGCAGCAGGACGAGTCAAGGGAGGTTGGGTCCGCGTGCGCAAA
GGGTTGCTGCGGAGGGGGGGGGGGGTGGGGGCAACAGTCGGCCGACGTTG
ATCCAGCCACGGCCAAGCTACGGTGCTGTGTAACATATAATAGACTGGTT
CACGTGGAGGCGACGGGAGATTTATGCGTTAAGGAAGAAACGACCTCACG
GGGCAAACTAAAGAAAATGAGATGTGAACGTTTATTTGACTAG
back to top

protein sequence of jgi.p|Nanoce1779_2|562088

>mRNA_1291-protein ID=mRNA_1291-protein|Name=jgi.p|Nanoce1779_2|562088|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MIKSSSTTTSTWSQALPPQYSLMIGNLLVLANFITALLVPWVEAQYKLFD
AWFPVYVPVRIGLLKCFSDVCSALTGAGRHQNSVQDKDKGGDSNSPPPIP
GWGPMGGDGVDGGTPDVGGGGGAKTLFEVAAIFGVILLSISVLLALGGAL
VEAARIQGRQDISGLFPLQLSVASAMVCLVALLQYLFITLAGLHGGHYLV
GFWLTLATAVTTGVLSLGQYLVNKSFFDQEYGDGGLFLPAHFKGGQRPTR
QVQQQDESREVGSACAKGCCGGGGGWGQQSADVDPATAKLRCCVTYNRLV
HVEATGDLCVKEETTSRGKLKKMRCERLFD*
back to top

mRNA from alignment at scaffold_1:196298..197290-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1291 ID=mRNA_1291|Name=jgi.p|Nanoce1779_2|562088|organism=Nannochloropsis oceanica|type=mRNA|length=993bp|location=Sequence derived from alignment at scaffold_1:196298..197290- (Nannochloropsis oceanica)
ATGATTAAGTCGAGCTCCACTACCACCAGCACCTGGTCGCAAGCCCTGCC
CCCGCAATACTCCCTGATGATTGGCAACTTGCTGGTGCTCGCCAACTTCA
TCACGGCCCTGCTCGTGCCCTGGGTGGAAGCTCAGTACAAACTCTTTGAT
GCCTGGTTCCCCGTCTATGTGCCTGTCAGAATTGGGCTCCTCAAGTGCTT
CAGTGACGTCTGCTCGGCATTAACGGGGGCCGGCCGCCACCAAAATTCCG
TGCAGGATAAAGACAAAGGAGGAGACAGCAACTCGCCGCCGCCCATCCCA
GGATGGGGTCCGATGGGGGGCGACGGGGTTGATGGAGGTACGCCAGATGT
CGGAGGGGGAGGGGGAGCCAAAACGTTGTTTGAGGTGGCCGCCATATTTG
GTGTCATTCTCCTTAGCATATCAGTGCTCTTGGCCTTGGGCGGAGCATTG
GTAGAGGCCGCACGCATTCAAGGCCGACAAGATATTAGTGGCTTGTTTCC
TTTGCAGCTTTCGGTGGCATCGGCGATGGTGTGCTTGGTAGCGTTGCTTC
AGTACTTGTTCATCACACTTGCCGGTCTGCATGGAGGGCATTATTTGGTG
GGTTTCTGGCTTACGCTGGCCACGGCGGTGACGACAGGTGTCTTGAGCTT
GGGGCAGTACTTGGTGAACAAAAGCTTCTTTGACCAGGAGTACGGAGATG
GAGGATTATTTTTGCCAGCACACTTCAAGGGAGGGCAACGACCGACAAGG
CAGGTGCAGCAGCAGGACGAGTCAAGGGAGGTTGGGTCCGCGTGCGCAAA
GGGTTGCTGCGGAGGGGGGGGGGGGTGGGGGCAACAGTCGGCCGACGTTG
ATCCAGCCACGGCCAAGCTACGGTGCTGTGTAACATATAATAGACTGGTT
CACGTGGAGGCGACGGGAGATTTATGCGTTAAGGAAGAAACGACCTCACG
GGGCAAACTAAAGAAAATGAGATGTGAACGTTTATTTGACTAG
back to top

Coding sequence (CDS) from alignment at scaffold_1:196298..197290-

>mRNA_1291 ID=mRNA_1291|Name=jgi.p|Nanoce1779_2|562088|organism=Nannochloropsis oceanica|type=CDS|length=993bp|location=Sequence derived from alignment at scaffold_1:196298..197290- (Nannochloropsis oceanica)
ATGATTAAGTCGAGCTCCACTACCACCAGCACCTGGTCGCAAGCCCTGCC
CCCGCAATACTCCCTGATGATTGGCAACTTGCTGGTGCTCGCCAACTTCA
TCACGGCCCTGCTCGTGCCCTGGGTGGAAGCTCAGTACAAACTCTTTGAT
GCCTGGTTCCCCGTCTATGTGCCTGTCAGAATTGGGCTCCTCAAGTGCTT
CAGTGACGTCTGCTCGGCATTAACGGGGGCCGGCCGCCACCAAAATTCCG
TGCAGGATAAAGACAAAGGAGGAGACAGCAACTCGCCGCCGCCCATCCCA
GGATGGGGTCCGATGGGGGGCGACGGGGTTGATGGAGGTACGCCAGATGT
CGGAGGGGGAGGGGGAGCCAAAACGTTGTTTGAGGTGGCCGCCATATTTG
GTGTCATTCTCCTTAGCATATCAGTGCTCTTGGCCTTGGGCGGAGCATTG
GTAGAGGCCGCACGCATTCAAGGCCGACAAGATATTAGTGGCTTGTTTCC
TTTGCAGCTTTCGGTGGCATCGGCGATGGTGTGCTTGGTAGCGTTGCTTC
AGTACTTGTTCATCACACTTGCCGGTCTGCATGGAGGGCATTATTTGGTG
GGTTTCTGGCTTACGCTGGCCACGGCGGTGACGACAGGTGTCTTGAGCTT
GGGGCAGTACTTGGTGAACAAAAGCTTCTTTGACCAGGAGTACGGAGATG
GAGGATTATTTTTGCCAGCACACTTCAAGGGAGGGCAACGACCGACAAGG
CAGGTGCAGCAGCAGGACGAGTCAAGGGAGGTTGGGTCCGCGTGCGCAAA
GGGTTGCTGCGGAGGGGGGGGGGGGTGGGGGCAACAGTCGGCCGACGTTG
ATCCAGCCACGGCCAAGCTACGGTGCTGTGTAACATATAATAGACTGGTT
CACGTGGAGGCGACGGGAGATTTATGCGTTAAGGAAGAAACGACCTCACG
GGGCAAACTAAAGAAAATGAGATGTGAACGTTTATTTGACTAG
back to top
Synonyms
Publications