jgi.p|Nanoce1779_2|230918, mRNA_129 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|230918
Unique NamemRNA_129
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1417
Alignment locationscaffold_3:337433..339200 -

Link to JBrowse

Properties
Property NameValue
TranscriptId231004
TrackFilteredModels2
ProteinId230918
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:337433..339200 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|230918gene_129Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|230918mRNA_129-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_129CDS_129Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_129 ID=mRNA_129|Name=jgi.p|Nanoce1779_2|230918|organism=Nannochloropsis oceanica|type=mRNA|length=1417bp
TACGTTTAGCCAAGGCTGAGGAGGAAGTACTGGTCGTAAGGGAGGAAGCG
AGGGGGTGGAAGGGAGAAGTGGAGGGGCAACGCCACCGCTTGACAGCAGC
TGTAGCTCGAGCAGAGGAAGCACAGAAGGCGAGCGAGAAATGGAGGCGGA
CGCCGCCCATGACTTGGAGCAGATCCTTGAGAAATACAAACTCCGACTCG
AACAGGCTGCTATGGCCAAGCAGCACTACCGCGATCTAGAGGAGCAAAAC
GCCAAATACCTGGATCAGGTGCTGGCGTTGGAGGCAGAGGCAAAAGCGAG
TGTCCCGAGCCTCAAGAGAGCGATCGAGCAGTACAAGGATCAAGTAGTCG
GGCTGGAGAGGGACCGTTACCAGGCCATGGAACGGAGGGAGGTCATGGAG
GGGGAGTTGGAGAGGGCGAAGGAGGAGGTGGAGGGCGCGAGGGAGGCACG
GCGGTTCCTGATGGAGGAATGTCAGGAATTGAAACGGGTCGTGCAGCAGC
TACATCTGCAGCAGGAGCAGCCGCAGGGATCGCAGGAGGGACAGCCGCAA
TTACCGGGCGGAGGAAGGTCAGGAGAGGAGGAAAGGGATGAAGGAGGTTT
GGCTTTGTTTGAGGATGCCTGGGACAATAAAGAGAAATTGCTGCGGCTGG
AGCGAGAGAATAGGATGTTACGAAAACAGGTGGAGGACGGGGGCTGGCCG
AGGGTAGGGGAGGGAGAGGACCTCTTGCTGCTGAAATCGCAAATGCAGGA
TCTACGGAGGGTGAAGGAGGAGAGGGAGGCTGAGGCAATAGCGGCTAAGA
AGAGAACAGCCGAATTGGAGGGGAACGTGGCTATGCTGAGAGGGCAGTGT
GAGGAGATGGAGGAAGAGGTGGGTAGGATGAAGGAGGAGGGGGTCGGAAG
AGCAGCGGCAGCAGCTGCAGCAGCTGTAGAAGGAAAAGAGAAGGCATTGG
CGCGCGTGCAGCTCTTGCTACAGCAAGAGAAGGAGTGGGAGGAGCAGGTG
CTGAGATTAAAGGGGGAAAAGGATCGGTTGGAGGAATACGCCAAAAAGAC
GTTAAGGACGGTACAGGAGAAATATGTGCAGACGTTGGGGGATTTGAAAG
GGAGCAACACTGAGTATAAAGCCAGAAATCAGGCGTTGGAAGCACGGTTA
TTGGAAGACAGGCAAGCGCAGAAGAGGGAGGAGAAGCTGCTGATGTCGTG
TGTGTATGGGATTGGCATGGAGATGCTGCAGTCTGAAAGGAGGGAGGGAG
GGAGGAAGGGTTGAGGAGGGAGAAAGGAGACAAATTTGCATGTGCTGTAC
GTATGTGTGTGTGAGGCTTACTGTGAGTATTTGAGTGGAGGAAGGGGATG
AGAGAAGGAGGGAGGAAGAAAAGAAAGATCAGAAGAAAAACGGACAAAGC
TAGACACTGCCTTGGAG
back to top

protein sequence of jgi.p|Nanoce1779_2|230918

>mRNA_129-protein ID=mRNA_129-protein|Name=jgi.p|Nanoce1779_2|230918|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MEADAAHDLEQILEKYKLRLEQAAMAKQHYRDLEEQNAKYLDQVLALEAE
AKASVPSLKRAIEQYKDQVVGLERDRYQAMERREVMEGELERAKEEVEGA
REARRFLMEECQELKRVVQQLHLQQEQPQGSQEGQPQLPGGGRSGEEERD
EGGLALFEDAWDNKEKLLRLERENRMLRKQVEDGGWPRVGEGEDLLLLKS
QMQDLRRVKEEREAEAIAAKKRTAELEGNVAMLRGQCEEMEEEVGRMKEE
GVGRAAAAAAAAVEGKEKALARVQLLLQQEKEWEEQVLRLKGEKDRLEEY
AKKTLRTVQEKYVQTLGDLKGSNTEYKARNQALEARLLEDRQAQKREEKL
LMSCVYGIGMEMLQSERREGGRKG*
back to top

mRNA from alignment at scaffold_3:337433..339200-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_129 ID=mRNA_129|Name=jgi.p|Nanoce1779_2|230918|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp|location=Sequence derived from alignment at scaffold_3:337433..339200- (Nannochloropsis oceanica)
TACGTTTAGCCAAGGCTGAGGAGGAAGTACTGGTCGTAAGGGAGGAAGCG
AGGGGGTGGAAGGGAGAAGTGGAGGGGCAACGCCACCGCTTGACAGCAGC
TGTAGCTCGAGCAGAGGAAGCACAGAAGGCGAGCGAGAAATGGAGGGTGA
GACTGGAGGCGAAAGAGCTAGAAGGAGAGCATTGGAGACAGGAAGCAAGG
AGGTGGGAGGACCGGGTGAAGGGGGAGAGGGAGAGAGCGGATAGAGCGGA
GGAGGGGAGGAGGAGGCTGGCGGATGAGGTGGATGTGTTGCGGGAGAAAG
GTGAGGAGGGAGGAAGGGAAGGAGGAAGGGAGGTAGGCAGGGAGGAAAGA
AAGGAAGGAAAAAATGAGGGAATGATTTATCTTTTTATCCTATCAAGCCT
CATGCGATGGGGCTAAAGAGAGGCGTTGCAATATGTCTTACCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTACCACAGCGG
ACGCCGCCCATGACTTGGAGCAGATCCTTGAGAAATACAAACTCCGACTC
GAACAGGCTGCTATGGCCAAGCAGCACTACCGCGATCTAGAGGAGCAAAA
CGCCAAATACCTGGATCAGGTGCTGGCGTTGGAGGCAGAGGCAAAAGCGA
GTGTCCCGAGCCTCAAGAGAGCGATCGAGCAGTACAAGGATCAAGTAGTC
GGGCTGGAGAGGGACCGTTACCAGGCCATGGAACGGAGGGAGGTCATGGA
GGGGGAGTTGGAGAGGGCGAAGGAGGAGGTGGAGGGCGCGAGGGAGGCAC
GGCGGTTCCTGATGGAGGAATGTCAGGAATTGAAACGGGTCGTGCAGCAG
CTACATCTGCAGCAGGAGCAGCCGCAGGGATCGCAGGAGGGACAGCCGCA
ATTACCGGGCGGAGGAAGGTCAGGAGAGGAGGAAAGGGATGAAGGAGGTT
TGGCTTTGTTTGAGGATGCCTGGGACAATAAAGAGAAATTGCTGCGGCTG
GAGCGAGAGAATAGGATGTTACGAAAACAGGTGGAGGACGGGGGCTGGCC
GAGGGTAGGGGAGGGAGAGGACCTCTTGCTGCTGAAATCGCAAATGCAGG
ATCTACGGAGGGTGAAGGAGGAGAGGGAGGCTGAGGCAATAGCGGCTAAG
AAGAGAACAGCCGAATTGGAGGGGAACGTGGCTATGCTGAGAGGGCAGTG
TGAGGAGATGGAGGAAGAGGTGGGTAGGATGAAGGAGGAGGGGGTCGGAA
GAGCAGCGGCAGCAGCTGCAGCAGCTGTAGAAGGAAAAGAGAAGGCATTG
GCGCGCGTGCAGCTCTTGCTACAGCAAGAGAAGGAGTGGGAGGAGCAGGT
GCTGAGATTAAAGGGGGAAAAGGATCGGTTGGAGGAATACGCCAAAAAGA
CGTTAAGGACGGTACAGGAGAAATATGTGCAGACGTTGGGGGATTTGAAA
GGGAGCAACACTGAGTATAAAGCCAGAAATCAGGCGTTGGAAGCACGGTT
ATTGGAAGACAGGCAAGCGCAGAAGAGGGAGGAGAAGCTGCTGATGTCGT
GTGTGTATGGGATTGGCATGGAGATGCTGCAGTCTGAAAGGAGGGAGGGA
GGGAGGAAGGGTTGAGGAGGGAGAAAGGAGACAAATTTGCATGTGCTGTA
CGTATGTGTGTGTGAGGCTTACTGTGAGTATTTGAGTGGAGGAAGGGGAT
GAGAGAAGGAGGGAGGAAGAAAAGAAAGATCAGAAGAAAAACGGACAAAG
CTAGACACTGCCTTGGAG
back to top

Coding sequence (CDS) from alignment at scaffold_3:337433..339200-

>mRNA_129 ID=mRNA_129|Name=jgi.p|Nanoce1779_2|230918|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_3:337433..339200- (Nannochloropsis oceanica)
CGGACGCCGCCCATGACTTGGAGCAGATCCTTGAGAAATACAAACTCCGA
CTCGAACAGGCTGCTATGGCCAAGCAGCACTACCGCGATCTAGAGGAGCA
AAACGCCAAATACCTGGATCAGGTGCTGGCGTTGGAGGCAGAGGCAAAAG
CGAGTGTCCCGAGCCTCAAGAGAGCGATCGAGCAGTACAAGGATCAAGTA
GTCGGGCTGGAGAGGGACCGTTACCAGGCCATGGAACGGAGGGAGGTCAT
GGAGGGGGAGTTGGAGAGGGCGAAGGAGGAGGTGGAGGGCGCGAGGGAGG
CACGGCGGTTCCTGATGGAGGAATGTCAGGAATTGAAACGGGTCGTGCAG
CAGCTACATCTGCAGCAGGAGCAGCCGCAGGGATCGCAGGAGGGACAGCC
GCAATTACCGGGCGGAGGAAGGTCAGGAGAGGAGGAAAGGGATGAAGGAG
GTTTGGCTTTGTTTGAGGATGCCTGGGACAATAAAGAGAAATTGCTGCGG
CTGGAGCGAGAGAATAGGATGTTACGAAAACAGGTGGAGGACGGGGGCTG
GCCGAGGGTAGGGGAGGGAGAGGACCTCTTGCTGCTGAAATCGCAAATGC
AGGATCTACGGAGGGTGAAGGAGGAGAGGGAGGCTGAGGCAATAGCGGCT
AAGAAGAGAACAGCCGAATTGGAGGGGAACGTGGCTATGCTGAGAGGGCA
GTGTGAGGAGATGGAGGAAGAGGTGGGTAGGATGAAGGAGGAGGGGGTCG
GAAGAGCAGCGGCAGCAGCTGCAGCAGCTGTAGAAGGAAAAGAGAAGGCA
TTGGCGCGCGTGCAGCTCTTGCTACAGCAAGAGAAGGAGTGGGAGGAGCA
GGTGCTGAGATTAAAGGGGGAAAAGGATCGGTTGGAGGAATACGCCAAAA
AGACGTTAAGGACGGTACAGGAGAAATATGTGCAGACGTTGGGGGATTTG
AAAGGGAGCAACACTGAGTATAAAGCCAGAAATCAGGCGTTGGAAGCACG
GTTATTGGAAGACAGGCAAGCGCAGAAGAGGGAGGAGAAGCTGCTGATGT
CGTGTGTGTATGGGATTGGCATGGAGATGCTGCAGTCTGAAAGGAGGGAG
GGAGGGAGGAAGGGTTGAATGGAGGCGGACGCCGCCCATGACTTGGAGCA
GATCCTTGAGAAATACAAACTCCGACTCGAACAGGCTGCTATGGCCAAGC
AGCACTACCGCGATCTAGAGGAGCAAAACGCCAAATACCTGGATCAGGTG
CTGGCGTTGGAGGCAGAGGCAAAAGCGAGTGTCCCGAGCCTCAAGAGAGC
GATCGAGCAGTACAAGGATCAAGTAGTCGGGCTGGAGAGGGACCGTTACC
AGGCCATGGAACGGAGGGAGGTCATGGAGGGGGAGTTGGAGAGGGCGAAG
GAGGAGGTGGAGGGCGCGAGGGAGGCACGGCGGTTCCTGATGGAGGAATG
TCAGGAATTGAAACGGGTCGTGCAGCAGCTACATCTGCAGCAGGAGCAGC
CGCAGGGATCGCAGGAGGGACAGCCGCAATTACCGGGCGGAGGAAGGTCA
GGAGAGGAGGAAAGGGATGAAGGAGGTTTGGCTTTGTTTGAGGATGCCTG
GGACAATAAAGAGAAATTGCTGCGGCTGGAGCGAGAGAATAGGATGTTAC
GAAAACAGGTGGAGGACGGGGGCTGGCCGAGGGTAGGGGAGGGAGAGGAC
CTCTTGCTGCTGAAATCGCAAATGCAGGATCTACGGAGGGTGAAGGAGGA
GAGGGAGGCTGAGGCAATAGCGGCTAAGAAGAGAACAGCCGAATTGGAGG
GGAACGTGGCTATGCTGAGAGGGCAGTGTGAGGAGATGGAGGAAGAGGTG
GGTAGGATGAAGGAGGAGGGGGTCGGAAGAGCAGCGGCAGCAGCTGCAGC
AGCTGTAGAAGGAAAAGAGAAGGCATTGGCGCGCGTGCAGCTCTTGCTAC
AGCAAGAGAAGGAGTGGGAGGAGCAGGTGCTGAGATTAAAGGGGGAAAAG
GATCGGTTGGAGGAATACGCCAAAAAGACGTTAAGGACGGTACAGGAGAA
ATATGTGCAGACGTTGGGGGATTTGAAAGGGAGCAACACTGAGTATAAAG
CCAGAAATCAGGCGTTGGAAGCACGGTTATTGGAAGACAGGCAAGCGCAG
AAGAGGGAGGAGAAGCTGCTGATGTCGTGTGTGTATGGGATTGGCATGGA
GATGCTGCAGTCTGAAAGGAGGGAGGGAGGGAGGAAGGGTTGAATGGAGG
back to top
Synonyms
Publications