jgi.p|Nanoce1779_2|571619, mRNA_1289 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571619
Unique NamemRNA_1289
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length582
Alignment locationscaffold_1:189357..189938 -

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Properties
Property NameValue
TranscriptId571705
TrackFilteredModels2
ProteinId571619
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:189357..189938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571619gene_1289Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571619mRNA_1289-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1289CDS_1289Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1289 ID=mRNA_1289|Name=jgi.p|Nanoce1779_2|571619|organism=Nannochloropsis oceanica|type=mRNA|length=582bp
CACCGAGAATACCTGCGCGGAGTGAGAGAGTATTCTAGAATTGTCCATAA
CACGTTTTTCCATCCCTCGAATGCCACCTTTTTCTCTTTGGCCTCTCTGT
TTAACTTACTTGAAGACTGTGGAGGCCTTGACTCGCTTGGTGCAGCTTTA
CAAGGTGGCTGGCTTCGGTCTCGGAGCGACTTCTGGGGCATCCTACTGCA
TATTCTCGATCAACGCACTCAAGCTCGTGCTAGTCTTCCAAAAAAACGCA
GTGGCCTGCGCTGCGTACCGCGCCCTGCAAGGACGAAGAGGATGGCCGGA
ATTTTTCCCCGCGCGCGTGTGTAGCGCTTTTAGAGCACGACCTCGCACCG
GAATACCTCCTGTGATCACAATTTGCACGTAAGTATAATTTTTATGGTTC
ACATTTAAACCCAATGTAGAGGGAGTAACACCGATTAAATACCTTTGAGA
AGTCTTCTCGAAAAAAGGGAAGAAAATTAAGGGCATAGAACAACAAATAA
ACGGCCACCTTTCGCGCCCTCTGGATGGAGCTGTAGACCGCACAACTTAA
GACCCTAACGACACGAAAGCAACAGACTTATT
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protein sequence of jgi.p|Nanoce1779_2|571619

>mRNA_1289-protein ID=mRNA_1289-protein|Name=jgi.p|Nanoce1779_2|571619|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MPPFSLWPLCLTYLKTVEALTRLVQLYKVAGFGLGATSGASYCIFSINAL
KLVLVFQKNAVACAAYRALQGRRGWPEFFPARVCSAFRARPRTGIPPVIT
ICT*
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mRNA from alignment at scaffold_1:189357..189938-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1289 ID=mRNA_1289|Name=jgi.p|Nanoce1779_2|571619|organism=Nannochloropsis oceanica|type=mRNA|length=582bp|location=Sequence derived from alignment at scaffold_1:189357..189938- (Nannochloropsis oceanica)
CACCGAGAATACCTGCGCGGAGTGAGAGAGTATTCTAGAATTGTCCATAA
CACGTTTTTCCATCCCTCGAATGCCACCTTTTTCTCTTTGGCCTCTCTGT
TTAACTTACTTGAAGACTGTGGAGGCCTTGACTCGCTTGGTGCAGCTTTA
CAAGGTGGCTGGCTTCGGTCTCGGAGCGACTTCTGGGGCATCCTACTGCA
TATTCTCGATCAACGCACTCAAGCTCGTGCTAGTCTTCCAAAAAAACGCA
GTGGCCTGCGCTGCGTACCGCGCCCTGCAAGGACGAAGAGGATGGCCGGA
ATTTTTCCCCGCGCGCGTGTGTAGCGCTTTTAGAGCACGACCTCGCACCG
GAATACCTCCTGTGATCACAATTTGCACGTAAGTATAATTTTTATGGTTC
ACATTTAAACCCAATGTAGAGGGAGTAACACCGATTAAATACCTTTGAGA
AGTCTTCTCGAAAAAAGGGAAGAAAATTAAGGGCATAGAACAACAAATAA
ACGGCCACCTTTCGCGCCCTCTGGATGGAGCTGTAGACCGCACAACTTAA
GACCCTAACGACACGAAAGCAACAGACTTATT
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Coding sequence (CDS) from alignment at scaffold_1:189357..189938-

>mRNA_1289 ID=mRNA_1289|Name=jgi.p|Nanoce1779_2|571619|organism=Nannochloropsis oceanica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_1:189357..189938- (Nannochloropsis oceanica)
ATGCCACCTTTTTCTCTTTGGCCTCTCTGTTTAACTTACTTGAAGACTGT
GGAGGCCTTGACTCGCTTGGTGCAGCTTTACAAGGTGGCTGGCTTCGGTC
TCGGAGCGACTTCTGGGGCATCCTACTGCATATTCTCGATCAACGCACTC
AAGCTCGTGCTAGTCTTCCAAAAAAACGCAGTGGCCTGCGCTGCGTACCG
CGCCCTGCAAGGACGAAGAGGATGGCCGGAATTTTTCCCCGCGCGCGTGT
GTAGCGCTTTTAGAGCACGACCTCGCACCGGAATACCTCCTGTGATCACA
ATTTGCACGTAA
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Synonyms
Publications