jgi.p|Nanoce1779_2|571614, mRNA_1288 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|571614
Unique NamemRNA_1288
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length822
Alignment locationscaffold_1:187695..188516 -

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Properties
Property NameValue
TranscriptId571700
TrackFilteredModels2
ProteinId571614
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:187695..188516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571614gene_1288Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|571614mRNA_1288-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1288CDS_1288Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1288 ID=mRNA_1288|Name=jgi.p|Nanoce1779_2|571614|organism=Nannochloropsis oceanica|type=mRNA|length=822bp
GAGGGGATGAGGCGTCATTGTTTGCCGGCGAGGTCTTTGGCATGTACGAA
CGCTTTGCCGCCGCACAGAAGTGGCGTTTTGAAATTTTGAGTGCGTCCAA
GAATGAATTTGGGGGGTTGAAGGAAGCGGCTGCGGCTGTTCAAGGTCATT
TAGCGTACCCTGCGCTCAAGTTTGAGAGTGGCGTGCATCGTGTGCAACGT
GTGCCGGTGAACGACAGCCGGCTCCATACCTCGGCGGCAACAGTTGCCGT
GCTGCCCGAGCCTCAAGAGGTGGACTTTAAATTGGATACACGTGATCTCA
AATTTGATGTTTATCGCGCAAGTGGTGCAGGGGGCCAGCATGTCAACACC
ACTGAAAGCGCCGTCCGCGTCACGCACGTGCCCTCAGGCATCGTCGTCGC
TATCCAAGACGAGCGGTCACAACATAAAAACAAGGACAAAGCCATTAAAA
TTCTGCGTGCGCGGGTCTACGAGAGAGAGCAAGCCAAGGTTATGGCTGCA
CAAGCCTCGACACGTAAATCGCAGGTGGGGTCGGGGGATCGATCGGAGCG
CATTCGAACGTATAATTTTGCGCAGGACCGAGTGACGGACCACAGGATTA
GTTTGAGCAAACATGGCATAGATAGGATGATGGGAGGGGAATTACTCAAA
GAATTCAGTGAGGCGCTGCAGAGCGCGGAGGAGGCGGAGAAACTTAGGCA
ATTACTGAAAGGGGAGGTCTGAAGAAATGAAGGAGAGAATTACGGACATG
AAAAGAAAAGTACACACAACAATTTGTAGGATTAAAATAGAAGAATCAAA
TACTAAGCACCAAGATAAGAAA
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protein sequence of jgi.p|Nanoce1779_2|571614

>mRNA_1288-protein ID=mRNA_1288-protein|Name=jgi.p|Nanoce1779_2|571614|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MYERFAAAQKWRFEILSASKNEFGGLKEAAAAVQGHLAYPALKFESGVHR
VQRVPVNDSRLHTSAATVAVLPEPQEVDFKLDTRDLKFDVYRASGAGGQH
VNTTESAVRVTHVPSGIVVAIQDERSQHKNKDKAIKILRARVYEREQAKV
MAAQASTRKSQVGSGDRSERIRTYNFAQDRVTDHRISLSKHGIDRMMGGE
LLKEFSEALQSAEEAEKLRQLLKGEV*
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mRNA from alignment at scaffold_1:187695..188516-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1288 ID=mRNA_1288|Name=jgi.p|Nanoce1779_2|571614|organism=Nannochloropsis oceanica|type=mRNA|length=822bp|location=Sequence derived from alignment at scaffold_1:187695..188516- (Nannochloropsis oceanica)
GAGGGGATGAGGCGTCATTGTTTGCCGGCGAGGTCTTTGGCATGTACGAA
CGCTTTGCCGCCGCACAGAAGTGGCGTTTTGAAATTTTGAGTGCGTCCAA
GAATGAATTTGGGGGGTTGAAGGAAGCGGCTGCGGCTGTTCAAGGTCATT
TAGCGTACCCTGCGCTCAAGTTTGAGAGTGGCGTGCATCGTGTGCAACGT
GTGCCGGTGAACGACAGCCGGCTCCATACCTCGGCGGCAACAGTTGCCGT
GCTGCCCGAGCCTCAAGAGGTGGACTTTAAATTGGATACACGTGATCTCA
AATTTGATGTTTATCGCGCAAGTGGTGCAGGGGGCCAGCATGTCAACACC
ACTGAAAGCGCCGTCCGCGTCACGCACGTGCCCTCAGGCATCGTCGTCGC
TATCCAAGACGAGCGGTCACAACATAAAAACAAGGACAAAGCCATTAAAA
TTCTGCGTGCGCGGGTCTACGAGAGAGAGCAAGCCAAGGTTATGGCTGCA
CAAGCCTCGACACGTAAATCGCAGGTGGGGTCGGGGGATCGATCGGAGCG
CATTCGAACGTATAATTTTGCGCAGGACCGAGTGACGGACCACAGGATTA
GTTTGAGCAAACATGGCATAGATAGGATGATGGGAGGGGAATTACTCAAA
GAATTCAGTGAGGCGCTGCAGAGCGCGGAGGAGGCGGAGAAACTTAGGCA
ATTACTGAAAGGGGAGGTCTGAAGAAATGAAGGAGAGAATTACGGACATG
AAAAGAAAAGTACACACAACAATTTGTAGGATTAAAATAGAAGAATCAAA
TACTAAGCACCAAGATAAGAAA
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Coding sequence (CDS) from alignment at scaffold_1:187695..188516-

>mRNA_1288 ID=mRNA_1288|Name=jgi.p|Nanoce1779_2|571614|organism=Nannochloropsis oceanica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_1:187695..188516- (Nannochloropsis oceanica)
ATGTACGAACGCTTTGCCGCCGCACAGAAGTGGCGTTTTGAAATTTTGAG
TGCGTCCAAGAATGAATTTGGGGGGTTGAAGGAAGCGGCTGCGGCTGTTC
AAGGTCATTTAGCGTACCCTGCGCTCAAGTTTGAGAGTGGCGTGCATCGT
GTGCAACGTGTGCCGGTGAACGACAGCCGGCTCCATACCTCGGCGGCAAC
AGTTGCCGTGCTGCCCGAGCCTCAAGAGGTGGACTTTAAATTGGATACAC
GTGATCTCAAATTTGATGTTTATCGCGCAAGTGGTGCAGGGGGCCAGCAT
GTCAACACCACTGAAAGCGCCGTCCGCGTCACGCACGTGCCCTCAGGCAT
CGTCGTCGCTATCCAAGACGAGCGGTCACAACATAAAAACAAGGACAAAG
CCATTAAAATTCTGCGTGCGCGGGTCTACGAGAGAGAGCAAGCCAAGGTT
ATGGCTGCACAAGCCTCGACACGTAAATCGCAGGTGGGGTCGGGGGATCG
ATCGGAGCGCATTCGAACGTATAATTTTGCGCAGGACCGAGTGACGGACC
ACAGGATTAGTTTGAGCAAACATGGCATAGATAGGATGATGGGAGGGGAA
TTACTCAAAGAATTCAGTGAGGCGCTGCAGAGCGCGGAGGAGGCGGAGAA
ACTTAGGCAATTACTGAAAGGGGAGGTCTGA
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Synonyms
Publications