jgi.p|Nanoce1779_2|635553, mRNA_1286 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|635553
Unique NamemRNA_1286
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length402
Alignment locationscaffold_1:181712..182267 -

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Properties
Property NameValue
TranscriptId635639
TrackFilteredModels2
ProteinId635553
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:181712..182267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635553gene_1286Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|635553mRNA_1286-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1286CDS_1286Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1286 ID=mRNA_1286|Name=jgi.p|Nanoce1779_2|635553|organism=Nannochloropsis oceanica|type=mRNA|length=402bp
ATGGGCGTTGCTCCTCCTTCCCCCTTCCGTGCCGCTAAAACCGTTGCTGC
TGTCACCCATTCCCTCGACCGAACACTTGGCAAAGATACCTTGCAGCGGC
ACAACAGTGAAGAAGAAAGTACAATCAGTGACGCAGTGCACAGCAGTGTT
ATGCACATACATGCCGAGAAATACCTGCAGGCCTACCACCACCAGACCAA
GGCCGAGAACCCCCTCTATCGAACTAGCCAAAGCGTGATTGGCGCCCATC
CGCCTTCTGTAGCTACAGTCGTCACGGAGCGGTACGCCATCCCACAGGCC
TTTAGTAGCTCCGTTGGTAACATTTTGTACAGTGATCAGAGCCTCAACAC
CACGCTCACCCGCTCGAAGGTCCACCGGTCACTGGACCCGCACTTCTATT
AA
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protein sequence of jgi.p|Nanoce1779_2|635553

>mRNA_1286-protein ID=mRNA_1286-protein|Name=jgi.p|Nanoce1779_2|635553|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MGVAPPSPFRAAKTVAAVTHSLDRTLGKDTLQRHNSEEESTISDAVHSSV
MHIHAEKYLQAYHHQTKAENPLYRTSQSVIGAHPPSVATVVTERYAIPQA
FSSSVGNILYSDQSLNTTLTRSKVHRSLDPHFY*
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mRNA from alignment at scaffold_1:181712..182267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1286 ID=mRNA_1286|Name=jgi.p|Nanoce1779_2|635553|organism=Nannochloropsis oceanica|type=mRNA|length=556bp|location=Sequence derived from alignment at scaffold_1:181712..182267- (Nannochloropsis oceanica)
ATGGGCGTTGCTCCTCCTTCCCCCTTCCGTGCCGCTAAAACCGTTGCTGC
TGTCACCCATTCCCTCGACCGAACACTTGGCAAAGATACCTTGCAGCGGC
ACAACAGTGAAGAAGAAAGTACAATCAGTGACGCAGTGCACAGCAGTGTT
ATGCACATACATGCCGAGAAATACCTGCAGGCCTACCACCACCAGACCAA
GGCCGAGAACCCCCTCTATCGAACTAGCCAAAGCGTGATTGGCGCCCATC
CGCCTTCTGTAGCTACAGTCGTCACGGAGCGGTACGCCATCCCACAGGCC
TTTAGTAGCTCCGTTGGTAACATTTTGTACAGTGATCAGGTACGTTTTGG
GGACGCGCGGGTGCGCTGCGCTTGAAAAGGAGGATTTCGGCCGTGCCGAG
CTGCTCATATTGCGCGAGCAAAAAAAAGCGTCATTTTGATTTCTTCTTTC
TCCTCTCTCTTGCCACTTTGGCTTTCCTTATGCGCGTGCTCAGAGCCTCA
ACACCACGCTCACCCGCTCGAAGGTCCACCGGTCACTGGACCCGCACTTC
TATTAA
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Coding sequence (CDS) from alignment at scaffold_1:181712..182267-

>mRNA_1286 ID=mRNA_1286|Name=jgi.p|Nanoce1779_2|635553|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_1:181712..182267- (Nannochloropsis oceanica)
AGCCTCAACACCACGCTCACCCGCTCGAAGGTCCACCGGTCACTGGACCC
GCACTTCTATTAAATGGGCGTTGCTCCTCCTTCCCCCTTCCGTGCCGCTA
AAACCGTTGCTGCTGTCACCCATTCCCTCGACCGAACACTTGGCAAAGAT
ACCTTGCAGCGGCACAACAGTGAAGAAGAAAGTACAATCAGTGACGCAGT
GCACAGCAGTGTTATGCACATACATGCCGAGAAATACCTGCAGGCCTACC
ACCACCAGACCAAGGCCGAGAACCCCCTCTATCGAACTAGCCAAAGCGTG
ATTGGCGCCCATCCGCCTTCTGTAGCTACAGTCGTCACGGAGCGGTACGC
CATCCCACAGGCCTTTAGTAGCTCCGTTGGTAACATTTTGTACAGTGATC
AGAGCCTCAACACCACGCTCACCCGCTCGAAGGTCCACCGGTCACTGGAC
CCGCACTTCTATTAAATGGGCGTTGCTCCTCCTTCCCCCTTCCGTGCCGC
TAAAACCGTTGCTGCTGTCACCCATTCCCTCGACCGAACACTTGGCAAAG
ATACCTTGCAGCGGCACAACAGTGAAGAAGAAAGTACAATCAGTGACGCA
GTGCACAGCAGTGTTATGCACATACATGCCGAGAAATACCTGCAGGCCTA
CCACCACCAGACCAAGGCCGAGAACCCCCTCTATCGAACTAGCCAAAGCG
TGATTGGCGCCCATCCGCCTTCTGTAGCTACAGTCGTCACGGAGCGGTAC
GCCATCCCACAGGCCTTTAGTAGCTCCGTTGGTAACATTTTGTACAGTGA
TCAG
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Synonyms
Publications