jgi.p|Nanoce1779_2|2397, mRNA_1285 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|2397
Unique NamemRNA_1285
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length997
Alignment locationscaffold_1:180161..181157 -

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Properties
Property NameValue
TranscriptId2483
TrackFilteredModels2
ProteinId2397
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:180161..181157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|2397gene_1285Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|2397mRNA_1285-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1285CDS_1285Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1285 ID=mRNA_1285|Name=jgi.p|Nanoce1779_2|2397|organism=Nannochloropsis oceanica|type=mRNA|length=997bp
AGCGTATATCTGCACATATGAACTCCACAAAATACAGCAATCAGGAGGCA
AGCCTGGGATCATGGGCGGCGCGCGCACAAGCCTTCGCAACCGCAAAGAA
GACGGCGGGGGTAACAACAGTAATCACGACAACAACAACGGCGGCAGCAC
CAATAATAGTGGCACCAGCGCTGGAGGCGGACGCAGTGGCAACAAGGATG
GGGAAGGACGCAGCAGTGGACGGATCAGAAGCTCGGGGGACAACGACAGC
ACGAGAATCGGCCCCAGCGGGAGCCTCAGCACTACCGCCAACACCACCAA
GAAAAGCAAAGCCGAAGGTGGGGGCGGGCCCGGCCGCGGCAGAGCCCCCG
ATCGATGGCGTTCTCAAAAAATGGCAGAGGACTACATAAATTTGGTCGGG
GACTTGATGTACCCAAAAGTGGGCTTCGGGCCATATGGTTATGATGCGGT
CAAGGGGGAGATTCCGTTAGAGAGGCCGAACACCCTGGGAGCGATCATGT
GCCCGGTGCGGAGGCGGACAGTGATCGAGCATTGGAGTCCGTTTGAAGTG
GCGTGTTTCGAGGGGGCGATAATGCTGGTTGGGAAAAACTTTTATGAGAT
TGCCAAGTTGTTGCGGAGTAAGAGCACCAAGGATTGCATTGAGTTTTATT
ATGTGTGGAAGATGACAAGTCATTACCAACAATGGAAGCGGGGGTTTGAG
CCGTTGGATCCTCATCCATTTTCGATTCTCCCGCAAGATGATGACTAAGT
GTAGATGTTGAAAAGCTGAGAAGGAGGTGTGGTTGGCAGCAGGATAAGGG
GGAAGATGAGGAAGGAGAAAAGAAAGGGTGGCAAGCAGGGATGGGGTGAC
AATAGATATACGTTCAACCAATAGTTACGATAGGACAAAATTGTATAATT
GACTACGAGGTGGCGTGCGTGTATGCGGAGGGACGGGGGAAAAGTGGCGA
CACGAAATAAAGAAGAAACAAAGACGTCGCACCCAGACAGGATGGAG
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protein sequence of jgi.p|Nanoce1779_2|2397

>mRNA_1285-protein ID=mRNA_1285-protein|Name=jgi.p|Nanoce1779_2|2397|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MGGARTSLRNRKEDGGGNNSNHDNNNGGSTNNSGTSAGGGRSGNKDGEGR
SSGRIRSSGDNDSTRIGPSGSLSTTANTTKKSKAEGGGGPGRGRAPDRWR
SQKMAEDYINLVGDLMYPKVGFGPYGYDAVKGEIPLERPNTLGAIMCPVR
RRTVIEHWSPFEVACFEGAIMLVGKNFYEIAKLLRSKSTKDCIEFYYVWK
MTSHYQQWKRGFEPLDPHPFSILPQDDD*
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mRNA from alignment at scaffold_1:180161..181157-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1285 ID=mRNA_1285|Name=jgi.p|Nanoce1779_2|2397|organism=Nannochloropsis oceanica|type=mRNA|length=997bp|location=Sequence derived from alignment at scaffold_1:180161..181157- (Nannochloropsis oceanica)
AGCGTATATCTGCACATATGAACTCCACAAAATACAGCAATCAGGAGGCA
AGCCTGGGATCATGGGCGGCGCGCGCACAAGCCTTCGCAACCGCAAAGAA
GACGGCGGGGGTAACAACAGTAATCACGACAACAACAACGGCGGCAGCAC
CAATAATAGTGGCACCAGCGCTGGAGGCGGACGCAGTGGCAACAAGGATG
GGGAAGGACGCAGCAGTGGACGGATCAGAAGCTCGGGGGACAACGACAGC
ACGAGAATCGGCCCCAGCGGGAGCCTCAGCACTACCGCCAACACCACCAA
GAAAAGCAAAGCCGAAGGTGGGGGCGGGCCCGGCCGCGGCAGAGCCCCCG
ATCGATGGCGTTCTCAAAAAATGGCAGAGGACTACATAAATTTGGTCGGG
GACTTGATGTACCCAAAAGTGGGCTTCGGGCCATATGGTTATGATGCGGT
CAAGGGGGAGATTCCGTTAGAGAGGCCGAACACCCTGGGAGCGATCATGT
GCCCGGTGCGGAGGCGGACAGTGATCGAGCATTGGAGTCCGTTTGAAGTG
GCGTGTTTCGAGGGGGCGATAATGCTGGTTGGGAAAAACTTTTATGAGAT
TGCCAAGTTGTTGCGGAGTAAGAGCACCAAGGATTGCATTGAGTTTTATT
ATGTGTGGAAGATGACAAGTCATTACCAACAATGGAAGCGGGGGTTTGAG
CCGTTGGATCCTCATCCATTTTCGATTCTCCCGCAAGATGATGACTAAGT
GTAGATGTTGAAAAGCTGAGAAGGAGGTGTGGTTGGCAGCAGGATAAGGG
GGAAGATGAGGAAGGAGAAAAGAAAGGGTGGCAAGCAGGGATGGGGTGAC
AATAGATATACGTTCAACCAATAGTTACGATAGGACAAAATTGTATAATT
GACTACGAGGTGGCGTGCGTGTATGCGGAGGGACGGGGGAAAAGTGGCGA
CACGAAATAAAGAAGAAACAAAGACGTCGCACCCAGACAGGATGGAG
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Coding sequence (CDS) from alignment at scaffold_1:180161..181157-

>mRNA_1285 ID=mRNA_1285|Name=jgi.p|Nanoce1779_2|2397|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_1:180161..181157- (Nannochloropsis oceanica)
ATGGGCGGCGCGCGCACAAGCCTTCGCAACCGCAAAGAAGACGGCGGGGG
TAACAACAGTAATCACGACAACAACAACGGCGGCAGCACCAATAATAGTG
GCACCAGCGCTGGAGGCGGACGCAGTGGCAACAAGGATGGGGAAGGACGC
AGCAGTGGACGGATCAGAAGCTCGGGGGACAACGACAGCACGAGAATCGG
CCCCAGCGGGAGCCTCAGCACTACCGCCAACACCACCAAGAAAAGCAAAG
CCGAAGGTGGGGGCGGGCCCGGCCGCGGCAGAGCCCCCGATCGATGGCGT
TCTCAAAAAATGGCAGAGGACTACATAAATTTGGTCGGGGACTTGATGTA
CCCAAAAGTGGGCTTCGGGCCATATGGTTATGATGCGGTCAAGGGGGAGA
TTCCGTTAGAGAGGCCGAACACCCTGGGAGCGATCATGTGCCCGGTGCGG
AGGCGGACAGTGATCGAGCATTGGAGTCCGTTTGAAGTGGCGTGTTTCGA
GGGGGCGATAATGCTGGTTGGGAAAAACTTTTATGAGATTGCCAAGTTGT
TGCGGAGTAAGAGCACCAAGGATTGCATTGAGTTTTATTATGTGTGGAAG
ATGACAAGTCATTACCAACAATGGAAGCGGGGGTTTGAGCCGTTGGATCC
TCATCCATTTTCGATTCTCCCGCAAGATGATGACTAA
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Synonyms
Publications